ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60f07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018131.1| Zea mays clone EL01N0554D08.c mRNA sequence Length = 1060 Score = 125 bits (63), Expect = 1e-25 Identities = 117/135 (86%) Strand = Plus / Plus Query: 275 tactcggcgcgcgagcaggtgctcgccgaggtgcggaagctggtggagcgttacgctggg 334 ||||||||||| ||||||||||| ||||||||||| ||||||||||| | ||| ||| Sbjct: 23 tactcggcgcgggagcaggtgctggccgaggtgcgcaagctggtggatctgtaccacggg 82 Query: 335 aggggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcgatg 394 ||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 83 cagggcgagcaggtgagcgtgacggtcacgggccacagcctgggcagcgcgctggcgatg 142 Query: 395 atcagcgccttcgac 409 | ||||||||||| Sbjct: 143 ctgtgcgccttcgac 157
>ref|XM_475184.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 338 ggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcgatgatc 397 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 985 ggcgaggacgtgagcgtgacggtgacggggcacagcctcggcagcgcgctggcgatgatc 1044 Query: 398 agcgccttcgacat 411 ||||| | |||||| Sbjct: 1045 agcgcgtacgacat 1058 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 44 atcggcttcgtcgccgtgtccacggacgaggagacggcgcgaatcggacgccgggacatc 103 ||||||| ||||||||| ||||| ||||||||||| ||||| | || || || |||||| Sbjct: 691 atcggctacgtcgccgtctccaccgacgaggagaccgcgcgcctgggccggcgcgacatc 750 Query: 104 gccgtcgcctggcgcggcacggtgacccggctggagtgggt 144 ||| |||| |||||||||||||| || || || |||||||| Sbjct: 751 gccatcgcgtggcgcggcacggtcacgcgcctcgagtgggt 791 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Plus Query: 209 gtgaaggtggagacggggttcgtggacctatacgtcggcaaggactcggcgtgccggttc 268 |||||||||||| | || ||||||||||| ||| || ||||||| | | ||||| ||| Sbjct: 856 gtgaaggtggagtccggcttcgtggacctctacaccgacaaggaccccacctgccgcttc 915 Query: 269 agcagctactcggcgcgcgagcaggtgctc 298 ||| ||||| |||||||||||||||||| Sbjct: 916 tgcaagtactccgcgcgcgagcaggtgctc 945
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 338 ggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcgatgatc 397 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 48011 ggcgaggacgtgagcgtgacggtgacggggcacagcctcggcagcgcgctggcgatgatc 47952 Query: 398 agcgccttcgacat 411 ||||| | |||||| Sbjct: 47951 agcgcgtacgacat 47938 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 44 atcggcttcgtcgccgtgtccacggacgaggagacggcgcgaatcggacgccgggacatc 103 ||||||| ||||||||| ||||| ||||||||||| ||||| | || || || |||||| Sbjct: 48305 atcggctacgtcgccgtctccaccgacgaggagaccgcgcgcctgggccggcgcgacatc 48246 Query: 104 gccgtcgcctggcgcggcacggtgacccggctggagtgggt 144 ||| |||| |||||||||||||| || || || |||||||| Sbjct: 48245 gccatcgcgtggcgcggcacggtcacgcgcctcgagtgggt 48205 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 209 gtgaaggtggagacggggttcgtggacctatacgtcggcaaggactcggcgtgccggttc 268 |||||||||||| | || ||||||||||| ||| || ||||||| | | ||||| ||| Sbjct: 48140 gtgaaggtggagtccggcttcgtggacctctacaccgacaaggaccccacctgccgcttc 48081 Query: 269 agcagctactcggcgcgcgagcaggtgctc 298 ||| ||||| |||||||||||||||||| Sbjct: 48080 tgcaagtactccgcgcgcgagcaggtgctc 48051
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 338 ggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcgatgatc 397 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 18742608 ggcgaggacgtgagcgtgacggtgacggggcacagcctcggcagcgcgctggcgatgatc 18742549 Query: 398 agcgccttcgacat 411 ||||| | |||||| Sbjct: 18742548 agcgcgtacgacat 18742535 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 44 atcggcttcgtcgccgtgtccacggacgaggagacggcgcgaatcggacgccgggacatc 103 ||||||| ||||||||| ||||| ||||||||||| ||||| | || || || |||||| Sbjct: 18742902 atcggctacgtcgccgtctccaccgacgaggagaccgcgcgcctgggccggcgcgacatc 18742843 Query: 104 gccgtcgcctggcgcggcacggtgacccggctggagtgggt 144 ||| |||| |||||||||||||| || || || |||||||| Sbjct: 18742842 gccatcgcgtggcgcggcacggtcacgcgcctcgagtgggt 18742802 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 209 gtgaaggtggagacggggttcgtggacctatacgtcggcaaggactcggcgtgccggttc 268 |||||||||||| | || ||||||||||| ||| || ||||||| | | ||||| ||| Sbjct: 18742737 gtgaaggtggagtccggcttcgtggacctctacaccgacaaggaccccacctgccgcttc 18742678 Query: 269 agcagctactcggcgcgcgagcaggtgctc 298 ||| ||||| |||||||||||||||||| Sbjct: 18742677 tgcaagtactccgcgcgcgagcaggtgctc 18742648 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 87 tcggacgccgggacatcgccgtcgcctggcgcggcacggtg 127 |||| ||||| ||||||| |||||| ||||||||||||||| Sbjct: 28377650 tcgggcgccgcgacatcgtcgtcgcgtggcgcggcacggtg 28377690
>ref|XM_475909.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1236 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 87 tcggacgccgggacatcgccgtcgcctggcgcggcacggtg 127 |||| ||||| ||||||| |||||| ||||||||||||||| Sbjct: 401 tcgggcgccgcgacatcgtcgtcgcgtggcgcggcacggtg 441
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 87 tcggacgccgggacatcgccgtcgcctggcgcggcacggtg 127 |||| ||||| ||||||| |||||| ||||||||||||||| Sbjct: 161892 tcgggcgccgcgacatcgtcgtcgcgtggcgcggcacggtg 161932
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 87 tcggacgccgggacatcgccgtcgcctggcgcggcacggtg 127 |||| ||||| ||||||| |||||| ||||||||||||||| Sbjct: 12574 tcgggcgccgcgacatcgtcgtcgcgtggcgcggcacggtg 12614
>ref|XM_480053.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1617 Score = 46.1 bits (23), Expect = 0.089 Identities = 32/35 (91%) Strand = Plus / Plus Query: 341 gaggaggtgagcgtgacggtgaccggccacagcct 375 |||||||||||| | ||||||||||| |||||||| Sbjct: 1093 gaggaggtgagcatcacggtgaccgggcacagcct 1127
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 383 gcgctggcgatgatcagcgcctt 405 ||||||||||||||||||||||| Sbjct: 262341 gcgctggcgatgatcagcgcctt 262363
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.089 Identities = 32/35 (91%) Strand = Plus / Plus Query: 341 gaggaggtgagcgtgacggtgaccggccacagcct 375 |||||||||||| | ||||||||||| |||||||| Sbjct: 2400652 gaggaggtgagcatcacggtgaccgggcacagcct 2400686 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 ||||||||||| ||||||||||| |||| Sbjct: 6262159 cggccacagccacggcagcgcgccggcg 6262186
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0025F03 Length = 138042 Score = 46.1 bits (23), Expect = 0.089 Identities = 32/35 (91%) Strand = Plus / Plus Query: 341 gaggaggtgagcgtgacggtgaccggccacagcct 375 |||||||||||| | ||||||||||| |||||||| Sbjct: 76622 gaggaggtgagcatcacggtgaccgggcacagcct 76656
>gb|AY104432.1| Zea mays PCO120449 mRNA sequence Length = 2218 Score = 46.1 bits (23), Expect = 0.089 Identities = 29/31 (93%) Strand = Plus / Plus Query: 362 accggccacagcctcggcagcgcgctggcga 392 |||||||||||||||||| ||||||||||| Sbjct: 1393 accggccacagcctcggcgccgcgctggcga 1423
>ref|NM_190303.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1308 Score = 44.1 bits (22), Expect = 0.35 Identities = 46/54 (85%) Strand = Plus / Plus Query: 338 ggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcg 391 |||||||| || ||||| ||| | ||||||||||| | ||||||||||||||| Sbjct: 763 ggcgaggacgtcagcgtcacgctcgccggccacagcatgggcagcgcgctggcg 816
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 362 accggccacagcctcggcagcgcgct 387 |||||||||||||||||| ||||||| Sbjct: 26068127 accggccacagcctcggcggcgcgct 26068102
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.35 Identities = 46/54 (85%) Strand = Plus / Plus Query: 338 ggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcg 391 |||||||| || ||||| ||| | ||||||||||| | ||||||||||||||| Sbjct: 39171190 ggcgaggacgtcagcgtcacgctcgccggccacagcatgggcagcgcgctggcg 39171243
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 282 cgcgcgagcaggtgctcgccgaggtg 307 ||||||||||| |||||||||||||| Sbjct: 3722469 cgcgcgagcagctgctcgccgaggtg 3722494
>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0035F12 Length = 153439 Score = 44.1 bits (22), Expect = 0.35 Identities = 46/54 (85%) Strand = Plus / Plus Query: 338 ggcgaggaggtgagcgtgacggtgaccggccacagcctcggcagcgcgctggcg 391 |||||||| || ||||| ||| | ||||||||||| | ||||||||||||||| Sbjct: 46950 ggcgaggacgtcagcgtcacgctcgccggccacagcatgggcagcgcgctggcg 47003
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 362 accggccacagcctcggcagcgcgct 387 |||||||||||||||||| ||||||| Sbjct: 25996303 accggccacagcctcggcggcgcgct 25996278
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 362 accggccacagcctcggcagcgcgct 387 |||||||||||||||||| ||||||| Sbjct: 43544 accggccacagcctcggcggcgcgct 43569
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 366 gccacagcctcggcagcgcgctggcgatgatcagcgc 402 |||||||| || ||||||| |||||||||||||||| Sbjct: 4821261 gccacagcatccacagcgcgatggcgatgatcagcgc 4821225 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 gagcaggtgctcgccgaggtgcgg 310 ||||||||||||| |||||||||| Sbjct: 4254038 gagcaggtgctcggcgaggtgcgg 4254015
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gctggcgatgatcagcgcctt 405 ||||||||||||||||||||| Sbjct: 358444 gctggcgatgatcagcgcctt 358424
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gaggaggtgagcgtgacggtg 361 ||||||||||||||||||||| Sbjct: 2527580 gaggaggtgagcgtgacggtg 2527560
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gaggaggtgagcgtgacggtg 361 ||||||||||||||||||||| Sbjct: 92560 gaggaggtgagcgtgacggtg 92540
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 cgcgagcaggtgctcgccgaggtgc 308 ||||||||| ||||||||||||||| Sbjct: 591836 cgcgagcagttgctcgccgaggtgc 591860 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 catcgccgtcgcctggcgcg 119 |||||||||||||||||||| Sbjct: 3166164 catcgccgtcgcctggcgcg 3166183
>ref|NM_209256.1| Eremothecium gossypii ADL193Cp (ADL193C), mRNA Length = 1398 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gctggcgatgatcagcgcctt 405 ||||||||||||||||||||| Sbjct: 861 gctggcgatgatcagcgcctt 881
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 cgccgaggtgcggaagctggtgga 321 ||||||||||||| |||||||||| Sbjct: 3740309 cgccgaggtgcgggagctggtgga 3740286
>ref|XM_480623.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1722 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 ||||||||||| ||||||||||| |||| Sbjct: 679 cggccacagccacggcagcgcgccggcg 706
>ref|XM_507516.1| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.40 mRNA Length = 1910 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1199 cggccacagcctcggcggcgccctggcg 1226
>ref|XM_467098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1910 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1199 cggccacagcctcggcggcgccctggcg 1226
>ref|XM_507515.1| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.40 mRNA Length = 1933 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1200 cggccacagcctcggcggcgccctggcg 1227
>ref|XM_506889.2| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.40 mRNA Length = 1964 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1200 cggccacagcctcggcggcgccctggcg 1227
>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence Length = 183993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ggaggggcgaggaggtgagc 352 |||||||||||||||||||| Sbjct: 83669 ggaggggcgaggaggtgagc 83688
>ref|XM_865796.1| PREDICTED: Bos taurus similar to phospholipase C delta 3, transcript variant 2 (LOC513057), mRNA Length = 2887 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 gctgggaggggcgaggaggtgagc 352 |||||||||||| ||||||||||| Sbjct: 1142 gctgggaggggccaggaggtgagc 1165
>ref|XM_590680.2| PREDICTED: Bos taurus similar to phospholipase C delta 3, transcript variant 1 (LOC513057), mRNA Length = 2904 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 gctgggaggggcgaggaggtgagc 352 |||||||||||| ||||||||||| Sbjct: 962 gctgggaggggccaggaggtgagc 985
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tggcgatgatcagcgccttc 406 |||||||||||||||||||| Sbjct: 5022926 tggcgatgatcagcgccttc 5022907
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence Length = 185449 Score = 40.1 bits (20), Expect = 5.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 356 acggtgaccggccacagcctcggcagcgcgctggcgatgatcagcgccttcgacat 411 ||||| ||||| |||||||||||| |||||| ||| || ||| ||||| |||||| Sbjct: 165753 acggtcaccggacacagcctcggcgccgcgctcgcggtgctcaccgcctacgacat 165808
>gb|AF471203.1| Homo sapiens clone 46-58a Ig heavy chain variable region, VH3 family mRNA, partial cds Length = 357 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 131 ggctggagtgggtggccgac 150
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gtgcggggtgccgtgccccg 200 |||||||||||||||||||| Sbjct: 699225 gtgcggggtgccgtgccccg 699206
>gb|DQ437795.1| Macaca mulatta clone 4 immunoglobulin heavy chain variable region precursor (IGHV3) gene, partial cds Length = 490 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 286 ggctggagtgggtggccgac 305
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 agcgcgctggcgatgatcagcgccttcg 407 |||||| |||||| |||||||||||||| Sbjct: 2692194 agcgcggtggcgaggatcagcgccttcg 2692221
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 cgcgagcaggtgctcgccgaggtg 307 ||||||||| |||||||||||||| Sbjct: 74278 cgcgagcagctgctcgccgaggtg 74255
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tcggcagcgcgctggcgatg 394 |||||||||||||||||||| Sbjct: 22070 tcggcagcgcgctggcgatg 22089
>gb|AE012338.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 246 of 460 of the complete genome Length = 10729 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gcctcggcagcgcgctggcg 391 |||||||||||||||||||| Sbjct: 4451 gcctcggcagcgcgctggcg 4470
>gb|BC103414.1| Bos taurus cDNA clone IMAGE:7956024 Length = 3000 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 gctgggaggggcgaggaggtgagc 352 |||||||||||| ||||||||||| Sbjct: 1228 gctgggaggggccaggaggtgagc 1251
>gb|AC026469.8| Homo sapiens chromosome 16 clone RP11-442O1, complete sequence Length = 199669 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tgggaggggcgaggaggtga 350 |||||||||||||||||||| Sbjct: 161832 tgggaggggcgaggaggtga 161813
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 cgcgcgagcaggtgctcgcc 301 |||||||||||||||||||| Sbjct: 1046639 cgcgcgagcaggtgctcgcc 1046658
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gcctcggcagcgcgctggcg 391 |||||||||||||||||||| Sbjct: 2200014 gcctcggcagcgcgctggcg 2199995
>gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ABC transporter gene cluster, partial sequence Length = 32800 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 cgctggcgatgatcagcgccttcg 407 ||||||||| |||||||||||||| Sbjct: 29600 cgctggcgaagatcagcgccttcg 29577
>dbj|AB126089.1| Oryza sativa (japonica cultivar-group) OsZIP4 mRNA for zinc transporter, complete cds Length = 1191 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 ||||||||||| ||||||||||| |||| Sbjct: 645 cggccacagccacggcagcgcgccggcg 672
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 356 acggtgaccggccacagcctcggcagcgcgctggcgatgatcagcgccttcgacat 411 ||||| ||||| |||||||||||| |||||| ||| || ||| ||||| |||||| Sbjct: 2094198 acggtcaccggacacagcctcggcgccgcgctcgcggtgctcaccgcctacgacat 2094253
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 26399337 cggccacagcctcggcggcgccctggcg 26399364
>gb|AC092341.5| Homo sapiens chromosome 16 clone RP11-260K13, complete sequence Length = 180623 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tgggaggggcgaggaggtga 350 |||||||||||||||||||| Sbjct: 35510 tgggaggggcgaggaggtga 35491
>gb|AF173917.1|AF173917 Macaca mulatta immunoglobulin heavy chain variable segment precursor (IGHV) pseudogene, partial sequence Length = 458 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 286 ggctggagtgggtggccgac 305
>gb|AF408728.1| Homo sapiens clone CbB2 anti-pneumococcal capsular polysaccharide immunoglobulin heavy chain variable region (IgG2) mRNA, partial cds Length = 294 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 131 ggctggagtgggtggccgac 150
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 131689 cggccacagcctcggcggcgccctggcg 131716
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ggcgatgatcagcgccttcg 407 |||||||||||||||||||| Sbjct: 4550607 ggcgatgatcagcgccttcg 4550626
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 ||||||||||| ||||||||||| |||| Sbjct: 48296 cggccacagccacggcagcgcgccggcg 48323
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 ||||||||||| ||||||||||| |||| Sbjct: 125552 cggccacagccacggcagcgcgccggcg 125579
>dbj|AK106154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A03, full insert sequence Length = 1910 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1199 cggccacagcctcggcggcgccctggcg 1226
>dbj|AK105258.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G07, full insert sequence Length = 1722 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 ||||||||||| ||||||||||| |||| Sbjct: 679 cggccacagccacggcagcgcgccggcg 706
>dbj|AK104793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F10, full insert sequence Length = 1910 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1199 cggccacagcctcggcggcgccctggcg 1226
>dbj|AK098925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P22, full insert sequence Length = 1934 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1200 cggccacagcctcggcggcgccctggcg 1227
>emb|AJ239359.1|HSA239359 Homo sapiens mRNA for immunoglobulin heavy chain variable region, ID 60 Length = 387 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgacttga 155 ||||||||||||||||| |||||| Sbjct: 131 ggctggagtgggtggccaacttga 154
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 caggtgctcgccgaggtgcg 309 |||||||||||||||||||| Sbjct: 4725762 caggtgctcgccgaggtgcg 4725781
>dbj|AK064950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P22, full insert sequence Length = 1964 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 1199 cggccacagcctcggcggcgccctggcg 1226
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 247016 ggctggagtgggtggccgac 247035
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcgcgcgagcaggtgctcgc 300 |||||||||||||||||||| Sbjct: 2005650 gcgcgcgagcaggtgctcgc 2005669
>gb|AF077474.1|AF077474 Homo sapiens clone BF3N3g3E09 nonfunctional immunoglobulin heavy chain, partial sequence Length = 297 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 95 ggctggagtgggtggccgac 114
>gb|DQ306260.1| Rhodococcus sp. T104 p-cumate-degrading gene cluster, complete sequence Length = 42397 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcaggtgctcgccgaggtgc 308 |||||||||||||||||||| Sbjct: 29427 gcaggtgctcgccgaggtgc 29446
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 356 acggtgaccggccacagcctcggcagcgcgctggcgatgatcagcgccttcgacat 411 ||||| ||||| |||||||||||| |||||| ||| || ||| ||||| |||||| Sbjct: 2101979 acggtcaccggacacagcctcggcgccgcgctcgcggtgctcaccgcctacgacat 2102034
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cggccacagcctcggcagcgcgctggcg 391 |||||||||||||||| |||| |||||| Sbjct: 121354 cggccacagcctcggcggcgccctggcg 121381
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 cgaggtgcggaagctggtggagcg 324 ||||||||||||||||| |||||| Sbjct: 1063399 cgaggtgcggaagctggcggagcg 1063376 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 cgaggtgcggaagctggtggagcg 324 ||||||||||||||||| |||||| Sbjct: 763677 cgaggtgcggaagctggcggagcg 763700
>gb|J03618.1|CRAIGHVC Goldfish Ig germline H chain pseudogene V-region (V5B) Length = 1346 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 791 ggctggagtgggtggccgac 810
>gb|AY429802.1| Homo sapiens isolate NSB-11-3-H3-F2 nonfunctional immunoglobulin heavy chain variable region gene, partial sequence Length = 286 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 77 ggctggagtgggtggccgac 96
>gb|J00237.1|HUMIGHVF2 Human Ig germline H-chain pseudogene H16BR, subgroup VH-III Length = 546 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 307 ggctggagtgggtggccgac 326
>gb|M99678.1|HUMIGH352P Human immunoglobulin heavy chain variable region V3-52P (IGHV@) gene, exons 1-2 Length = 767 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 497 ggctggagtgggtggccgac 516
>emb|Z80470.1|HSZ80470 H.sapiens BF2P1-g3A02np gene for immunoglobulin heavy chain variable region Length = 327 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 98 ggctggagtgggtggccgac 117
>emb|X92280.1|HSIGVH105 H.sapiens germline immunoglobulin heavy chain, variable region, (VH105) Length = 640 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 400 ggctggagtgggtggccgac 419
>emb|Z12343.1|HSIGDP43 H.sapiens germline Ig H-chain V-region (DP-43) Length = 294 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 131 ggctggagtgggtggccgac 150
>dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 2 of 5 Length = 200000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggctggagtgggtggccgac 151 |||||||||||||||||||| Sbjct: 47016 ggctggagtgggtggccgac 47035 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,699,592 Number of Sequences: 3902068 Number of extensions: 2699592 Number of successful extensions: 66857 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65005 Number of HSP's gapped (non-prelim): 1852 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
