Clone Information

BLAST Search Result

Clone Name	bast60e08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2	166	3e-41
2	RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3	166	4e-41
3	RL36A_ARATH (O80929) 60S ribosomal protein L36-1	164	8e-41
4	RL36_DAUCA (P52866) 60S ribosomal protein L36	138	6e-33
5	RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36	129	5e-30
6	RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A	118	7e-27
7	RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36	115	4e-26
8	RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36	115	4e-26
9	RL36B_SCHPO (O94658) 60S ribosomal protein L36-B	115	4e-26
10	RL36_BOVIN (Q3T171) 60S ribosomal protein L36	115	7e-26
11	RL36_RAT (P39032) 60S ribosomal protein L36	113	2e-25
12	RL36_MOUSE (P47964) 60S ribosomal protein L36	107	2e-23
13	RL36_CAEEL (P49181) 60S ribosomal protein L36	105	4e-23
14	RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)	103	3e-22
15	RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)	101	8e-22
16	RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)	100	1e-21
17	RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)	92	9e-19
18	RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)	91	1e-18
19	ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)	32	0.62
20	RS6_ICTPU (Q90YR8) 40S ribosomal protein S6	31	1.4
21	LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa...	31	1.4
22	ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)	31	1.8
23	VE4_HPV65 (Q07873) Probable protein E4	30	2.3
24	SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-...	30	2.3
25	ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)	30	2.3
26	5HT6R_PANTR (Q5IS65) 5-hydroxytryptamine 6 receptor (5-HT-6) (Se...	29	5.2
27	Y4QK_RHISN (P55632) Putative integrase/recombinase y4qK	29	5.2
28	IF2_GEOSL (Q74CT3) Translation initiation factor IF-2	29	5.2
29	ZO3_CANFA (O62683) Tight junction protein ZO-3 (Zonula occludens...	29	5.2
30	5HT6R_HUMAN (P50406) 5-hydroxytryptamine 6 receptor (5-HT-6) (Se...	29	6.8
31	SN1L2_HUMAN (Q9H0K1) Serine/threonine-protein kinase SNF1-like k...	29	6.8
32	Y1220_SULTO (Q972A7) Hypothetical protein ST1220	29	6.8
33	ASSY_LACPL (P59603) Argininosuccinate synthase (EC 6.3.4.5) (Cit...	29	6.8
34	TBX22_HUMAN (Q9Y458) T-box transcription factor TBX22 (T-box pro...	29	6.8
35	YRY5_CAEEL (Q09355) Hypothetical protein T15H9.5	28	8.9
36	ORN_HAEDU (Q7VNN8) Oligoribonuclease (EC 3.1.-.-)	28	8.9
37	CN102_MOUSE (Q80XC6) Protein C14orf102 homolog	28	8.9
38	YMH2_YEAST (Q03640) Hypothetical 171.1 kDa protein in RPL6A-DAK1...	28	8.9
39	H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC ...	28	8.9
40	RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific ...	28	8.9
41	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	28	8.9
42	IF2_BRUAB (Q57AA0) Translation initiation factor IF-2	28	8.9
43	IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2	28	8.9

>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  166 bits (420), Expect = 3e-41
 Identities = 85/106 (80%), Positives = 92/106 (86%)
 Frame = +2

Query: 41  MAPSQPKSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRI 220
           M   Q K+GLFVG NKGHVVT+REL PRP  RKGK +KR  F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 221 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 358
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G G
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGG 106

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>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  166 bits (419), Expect = 4e-41
 Identities = 83/99 (83%), Positives = 91/99 (91%)
 Frame = +2

Query: 62  SGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVG 241
           +GLFVG NKGHVVTKRE PPRP++RKGK +KR  F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 242 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 358
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G G
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAG 102

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>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  164 bits (416), Expect = 8e-41
 Identities = 83/98 (84%), Positives = 89/98 (90%)
 Frame = +2

Query: 59  KSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKV 238
           K+GLFVG NKGHVVT+REL PRP+ RKGK +KR  F+R LIREVAG APYEKRITELLKV
Sbjct: 7   KTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKV 66

Query: 239 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 352
           GKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G
Sbjct: 67  GKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLG 104

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>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score =  138 bits (348), Expect = 6e-33
 Identities = 68/91 (74%), Positives = 77/91 (84%)
 Frame = +2

Query: 41  MAPSQPKSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRI 220
           MAP QP +GLFVG NKGH+VTK+EL PRPSDRKGK +KR HFVR+LIREVAGF PYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 221 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 313
           TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61  TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +1

Query: 268 EAKVGHPQEGQEEERGDVQCPQEDEICWYW 357
           + KVGH QE +EEERGDVQC   DE  W+W
Sbjct: 77  QEKVGHSQESKEEERGDVQCSPPDE-GWWW 105

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>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  129 bits (323), Expect = 5e-30
 Identities = 65/95 (68%), Positives = 78/95 (82%)
 Frame = +2

Query: 74  VGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 253
           VG NKGH VTK+   PRPS RKG  ++RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 254 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 358
           ALK+ KRKLGTH R KKKREEM+ VLRKM++A  G
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKG 100

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>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score =  118 bits (296), Expect = 7e-27
 Identities = 59/95 (62%), Positives = 77/95 (81%)
 Frame = +2

Query: 65  GLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGK 244
           GL VG NKG V+TKR+LP RPS RKG+ +KR  FVRS++REVAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 245 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           DKRA K+AK++LGT KRAK K EE++SV++  R A
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

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>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score =  115 bits (289), Expect = 4e-26
 Identities = 59/92 (64%), Positives = 69/92 (75%)
 Frame = +2

Query: 74  VGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 253
           VG NKGH VTK    PR S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 254 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

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>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score =  115 bits (289), Expect = 4e-26
 Identities = 59/92 (64%), Positives = 69/92 (75%)
 Frame = +2

Query: 74  VGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 253
           VG NKGH VTK    PR S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 254 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

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>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score =  115 bits (289), Expect = 4e-26
 Identities = 58/95 (61%), Positives = 75/95 (78%)
 Frame = +2

Query: 65  GLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGK 244
           GL VG NKG  +TKR+LP RPS RKG  +KR  FVRS++REVAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 245 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           DKRA K+AK++LGT KRAK K EE++SV++  R A
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

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>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score =  115 bits (287), Expect = 7e-26
 Identities = 59/92 (64%), Positives = 69/92 (75%)
 Frame = +2

Query: 74  VGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 253
           VG NKGH VTK    PR S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 254 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

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>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score =  113 bits (283), Expect = 2e-25
 Identities = 58/92 (63%), Positives = 68/92 (73%)
 Frame = +2

Query: 74  VGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 253
           VG NKGH VTK    PR S R+G+ TK   FVR +IREV  FAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67

Query: 254 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

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>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score =  107 bits (267), Expect = 2e-23
 Identities = 55/92 (59%), Positives = 65/92 (70%)
 Frame = +2

Query: 74  VGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 253
           VG NKGH VTK    PR S R+ + T    FVR +IREV GFAPYE+R  ELLKV K KR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67

Query: 254 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           ALK  K+++GTH RAK+KREE+S+VL  M  A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMEEA 99

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>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score =  105 bits (263), Expect = 4e-23
 Identities = 49/95 (51%), Positives = 67/95 (70%)
 Frame = +2

Query: 65  GLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGK 244
           GL VG NKGH  T+  +  R +  KG  +K+   VR L+RE+ GFAPYE+R+ E+L++ K
Sbjct: 7   GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 66

Query: 245 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           DKRALK  KR++GTH+RAK KREE+ +V+   R A
Sbjct: 67  DKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 101

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>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score =  103 bits (256), Expect = 3e-22
 Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
 Frame = +2

Query: 41  MAPSQP-KSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKR 217
           MA   P K+GL VG NKGH  T R + PR S  KG  +KR  FVR +++EVAG APYE+R
Sbjct: 1   MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERR 60

Query: 218 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 349
           + ELL+  KDKRA K+AK++LGT  RAK+K +E+  V+ + R A
Sbjct: 61  VIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESRRA 104

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>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score =  101 bits (252), Expect = 8e-22
 Identities = 49/95 (51%), Positives = 70/95 (73%)
 Frame = +2

Query: 59  KSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKV 238
           KSG+  G NKG   T +E+ P+ S RKG  ++R  FVRS+++EVAG APYE+R+ EL++ 
Sbjct: 3   KSGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRN 62

Query: 239 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 343
             +KRA K+AK++LGTHKRA +K EEM+ V+ + R
Sbjct: 63  AGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97

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>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score =  100 bits (250), Expect = 1e-21
 Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 10/106 (9%)
 Frame = +2

Query: 68  LFVGNNKGHVVTKRELPPRPSDRKGKG----------TKRVHFVRSLIREVAGFAPYEKR 217
           L +G NKGH  +K        D+K KG          T+   F+R L+REV G APYEKR
Sbjct: 7   LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66

Query: 218 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGT 355
             ELLKV KDKRALK  KR+LGTH RAK+KREE+S++L ++R A T
Sbjct: 67  TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQT 112

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>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 44/95 (46%), Positives = 67/95 (70%)
 Frame = +2

Query: 59  KSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKV 238
           K+G+ +G NKG  VT+    P+ S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++ 
Sbjct: 3   KTGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62

Query: 239 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 343
             +KRA KVAK++LG+  RAK K EEM++++   R
Sbjct: 63  SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

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>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 44/95 (46%), Positives = 66/95 (69%)
 Frame = +2

Query: 59  KSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKV 238
           K+G+ +G NKG  VT     P+ S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++ 
Sbjct: 3   KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62

Query: 239 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 343
             +KRA KVAK++LG+  RAK K EEM++++   R
Sbjct: 63  SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

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>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)|
          Length = 178

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 375 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNFRFATFRARLSLPTLRSSVIRFSY 205
           + +  +P   +    R LD+S+L  LA  W P  +F      L+L  +R S+    +
Sbjct: 114 FLYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRF 170

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>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 200 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 322
           A Y K + + LK  K+KR  K+AKR+  +  RA + + E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247

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>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen|
           D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3)
           (Thyroid-associated ophthalmopathy autoantigen) (Smooth
           muscle leiomodin) (SM-Lmod)
          Length = 572

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
 Frame = +2

Query: 77  GNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIRE------VAGFAPYEKRI------ 220
           G  +G   +K+ L PR +   GK  KR    +S  R+       +G  P E++I      
Sbjct: 73  GQERGRDASKKALGPRRNSDLGKEPKRGGLKKSFSRDRDEAGGKSGEKPKEEKIIRGIDK 132

Query: 221 ------TELLKVGKD----KRALKVAK--------RKLGTHKRAKKKREEMSSVLRK 337
                  +  + GKD    +RA+   K        R  G  +   KKREEM  V +K
Sbjct: 133 GRVRAAVDKKEAGKDGRGEERAVATKKEEEKKGGDRNTGLSRDKDKKREEMKEVAKK 189

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>ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)|
          Length = 184

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 375 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 205
           + F  +P  AD    R LD+S+L  LA  W P+    F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNTHLALDDIRESIAELAY 173

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>VE4_HPV65 (Q07873) Probable protein E4|
          Length = 213

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 38  PMAPSQPKSGLFVGNNKGHVVTKRELPPRP 127
           P  PS P+  L VG N+G++    + PP+P
Sbjct: 111 PPTPSLPRRALVVGGNRGNLNRPPQRPPKP 140

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>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)|
          Length = 454

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 188 VAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 352
           +    P E+R  +++ + + KR  + +   +    +  K+ EEM  ++RK++ AG
Sbjct: 371 INSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKLQKAG 425

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>ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)|
          Length = 186

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 375 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 205
           + F  +P  AD    R LD+S+L  LA  W P     F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELARRWKPELLNGFEKKNTHLALDDIRESIAELAY 173

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>5HT6R_PANTR (Q5IS65) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
 Frame = -2

Query: 258 RARLSLPTLRSSVIRFSYGANPATSLIKLLTKCTLLVPFPLRSD-----GRGGSSRLVTT 94
           +A L+ P+LR+S      G  P  SL ++L      +P P  SD     G GGSS L  T
Sbjct: 345 QASLASPSLRTS----HSGPRPGLSLQQVLP-----LPLPPDSDSDSDAGSGGSSGLRLT 395

Query: 93  WPLLLP---TKRPDL 58
             LLLP   T+ P L
Sbjct: 396 AQLLLPGEATRDPPL 410

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>Y4QK_RHISN (P55632) Putative integrase/recombinase y4qK|
          Length = 308

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +2

Query: 53  QPKSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELL 232
           +PK  LF G+  GH +T+        D  G+   + H +  L + V   +        LL
Sbjct: 200 RPKEWLFPGDRAGHPITR--------DAVGQACAKAHDLSRLSKPVTPHSLRHAFAVHLL 251

Query: 233 KVGKDKRALKV 265
           + G D R +++
Sbjct: 252 EAGADVRTIQL 262

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>IF2_GEOSL (Q74CT3) Translation initiation factor IF-2|
          Length = 883

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
 Frame = +2

Query: 17  PR*RKGSP-MAPSQPKSGLFVGNNKG-----------HVVTKRELPPRPSDRKGKGTKRV 160
           P  RKG   +AP++P+ G       G            ++ KRE    P  + GKG KR 
Sbjct: 224 PPPRKGKEFVAPAEPERGAKKPGGGGAGKKKEAFKKTELLEKRERIFEPGPKTGKGKKRE 283

Query: 161 HFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKR 274
             + SL R+     P  K I  ++K+ +     ++AKR
Sbjct: 284 RDMVSLGRKTEITVP--KAIKRIIKISESITVGELAKR 319

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>ZO3_CANFA (O62683) Tight junction protein ZO-3 (Zonula occludens 3 protein)|
           (Zona occludens 3 protein) (Tight junction protein 3)
          Length = 898

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
 Frame = +2

Query: 50  SQPKSGL-FVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITE 226
           + P SGL F   +  HV+      P PS  +G     V   R L  +  G  P + R  +
Sbjct: 477 ASPPSGLGFTRGDVFHVLDTLCPGPGPSGARGTHWLAVRMGRDLREQERGIIPNQSRAEQ 536

Query: 227 LLKVGKDKRAL-----------------KVAKRKLGTHKRAKKKREEMSSVLRK 337
           L  +   +RA+                 ++   + G  K  ++ RE++S++ R+
Sbjct: 537 LASLESAQRAVGAGPGASVGSSARAEFWRLRGLRRGAKKSTQRSREDLSALTRQ 590

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>5HT6R_HUMAN (P50406) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -2

Query: 258 RARLSLPTLRSSVIRFSYGANPATSLIKLLTKCTLLVPFPLRSD-----GRGGSSRLVTT 94
           +A L+ P+LR+S      G  P  SL ++L      +P P  SD     G GGSS L  T
Sbjct: 345 QASLASPSLRTS----HSGPRPGLSLQQVLP-----LPLPPDSDSDSDAGSGGSSGLRLT 395

Query: 93  WPLLLP 76
             LLLP
Sbjct: 396 AQLLLP 401

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>SN1L2_HUMAN (Q9H0K1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
           2.7.11.1) (Qin-induced kinase)
          Length = 926

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 317 SPLSSSWPSCGCPTFASPPSEHAYPCQ 237
           +PL  S+ +C  P+ ASP  ++  PCQ
Sbjct: 840 APLQFSYQTCELPSAASPAPDYPTPCQ 866

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>Y1220_SULTO (Q972A7) Hypothetical protein ST1220|
          Length = 163

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 224 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 343
           E  +V   K  +K AKRK    KRA KK++  S   RK R
Sbjct: 122 EFSEVKPKKEKIKKAKRKKKGAKRASKKQKAKSKSARKSR 161

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>ASSY_LACPL (P59603) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 411

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 319 VQCPQEDEICWYWNREEEVEYPK 387
           ++ P  D   W+W+REEE++Y K
Sbjct: 142 IEAPVRD---WHWSREEEIDYAK 161

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>TBX22_HUMAN (Q9Y458) T-box transcription factor TBX22 (T-box protein 22)|
          Length = 520

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -3

Query: 431 KNWPPEQKIAINFTSLGYSTSSSRFQYQQISSS*GHWTSPLSSSW-PSCGCPTFASPPSE 255
           + +P      ++F + G  T S       ++SS G   SPL+S   P C  P F  P S 
Sbjct: 296 ETYPWRPSFTLDFKTFGADTQSGSSGSSPVTSS-GGAPSPLNSLLSPLCFSPMFHLPTSS 354

Query: 254 HAYPC 240
              PC
Sbjct: 355 LGMPC 359

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>YRY5_CAEEL (Q09355) Hypothetical protein T15H9.5|
          Length = 173

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 25/103 (24%), Positives = 48/103 (46%)
 Frame = +2

Query: 38  PMAPSQPKSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKR 217
           P++P + KS + V + K     K+E    P ++  K  K+         EV   A   + 
Sbjct: 64  PVSPEKKKSPIKVLSEKKLKSKKKEEDKEPDEKVEKDVKK---------EVK--ADNNEP 112

Query: 218 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 346
           + + LK+ K ++  +  K  L +HK   + +++ S   +KMR+
Sbjct: 113 LVKNLKIAKKEQEEENPKTDLESHKDEAEAKKKESRRQKKMRN 155

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>ORN_HAEDU (Q7VNN8) Oligoribonuclease (EC 3.1.-.-)|
          Length = 183

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 375 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSV 220
           + +  +P  AD    R LD+S+L  LA  W P    +F+   + L+L  +R S+
Sbjct: 116 FLYQYMPDLADYFHYRHLDVSTLKELARRWKPEILQQFSKKNSHLALDDIRESI 169

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>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 137 KGKGTKRVHFVRSLIR-EVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 313
           +G    R  F+RS ++ E++G +   +++ +     + K+  K  +RK   H++ K++ E
Sbjct: 52  EGSPPPRYSFIRSPLKSELSGESNTSEKLAQ---TSRKKKKEKKKRRKHQHHRKTKRRHE 108

Query: 314 EMSS 325
           ++SS
Sbjct: 109 QLSS 112

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>YMH2_YEAST (Q03640) Hypothetical 171.1 kDa protein in RPL6A-DAK1 intergenic|
            region
          Length = 1545

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +2

Query: 56   PKSGLFVGNNKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRIT--EL 229
            PKSG +VGNN    ++K +L     D + K T+      S++     F P     +  EL
Sbjct: 892  PKSGKYVGNNGKEEISKLKL----KDHEHKVTE------SIVNVSTTFIPINLVYSPEEL 941

Query: 230  LKVGKDKRALKVAKRKLGTHKRAKKKREE 316
            + V K ++ LK  K+K    +   ++  E
Sbjct: 942  VNVEKLEKELKEKKKKFEATQEENEQEME 970

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>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3)
          Length = 471

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 232 QGWQG*ACSEGGEAKVGHPQEGQEEERGDVQCPQEDE 342
           +G +G A  E  + + G P+EG+EEE  D   P+  E
Sbjct: 80  EGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPE 116

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>RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 416

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 259 EGGEAKVGHPQEGQEEERGDVQCPQEDE 342
           +G E KV   QE +EEER ++  P+E E
Sbjct: 380 KGQERKVPENQEEEEEERAELNQPEEPE 407

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
 Frame = +2

Query: 35  SPMAPSQPKSGLFVGNNKGHVVTKRELP----------PRPSDRKGKGTKRVHFVRSLIR 184
           +P APS P +       K HV  +R +           PRP+DR G        + +L R
Sbjct: 107 APAAPSAPVT-------KPHVAQQRPVHQRPGGQQAQRPRPADRSGM------VLNTLSR 153

Query: 185 EVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 316
                        ++ +V +  RA++ AKR+     R  K+REE
Sbjct: 154 SEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREE 197

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>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
 Frame = +2

Query: 35  SPMAPSQPKSGLFVGNNKGHVVTKRELP----------PRPSDRKGKGTKRVHFVRSLIR 184
           +P APS P +       K HV  +R +           PRP+DR G        + +L R
Sbjct: 107 APAAPSAPVT-------KPHVAQQRPVHQRPGGQQAQRPRPADRSGM------VLNTLSR 153

Query: 185 EVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 316
                        ++ +V +  RA++ AKR+     R  K+REE
Sbjct: 154 SEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREE 197

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>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
 Frame = +2

Query: 35  SPMAPSQPKSGLFVGNNKGHVVTKRELP----------PRPSDRKGKGTKRVHFVRSLIR 184
           +P APS P +       K HV  +R +           PRP+DR G        + +L R
Sbjct: 107 APAAPSAPVT-------KPHVAQQRPVHQRPGGQQAQRPRPADRSGM------VLNTLSR 153

Query: 185 EVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 316
                        ++ +V +  RA++ AKR+     R  K+REE
Sbjct: 154 SEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREE 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,611,986
Number of Sequences: 219361
Number of extensions: 1419835
Number of successful extensions: 5361
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 5127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5344
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result