>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 229 WCSTPAPAPGQWCA-PAAIGILGGSCAITYG-RERTSW 122
           WC TP+  P  WC+ P  +   G  C+ T   R R++W
Sbjct: 662 WCRTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTW 699

>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)|
          Length = 815

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 248 HGGPVAMVLHAGSGAGPVVRPGSHRDLGRELRH 150
           HGGP  M  H G G  P +  G H + G  + H
Sbjct: 607 HGGPAGMPPHMGGGPNPHMMGGPHGNAGPHMGH 639

>MTP7_PSEAE (P05103) Modification methylase PaeR7I (EC 2.1.1.72)|
           (Adenine-specific methyltransferase PaeR7I) (M.PaeR7I)
          Length = 549

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 20  AHRSHYAARWLVTLSG*LALPELARSY*LLRIAGPARPLSTVRNGA 157
           AHR       L TL+G L+ P L +       AGP R L+ V NGA
Sbjct: 249 AHRPSIDRATLTTLAGLLSAPTLPKD------AGPVRELARVTNGA 288

>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 553

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -1

Query: 244 AGPWPWCSTPAPAPGQWCAPAAIGILGGSCAI 149
           A P P  + PAPAP    APAA    GG   I
Sbjct: 92  AAPAPAAAAPAPAPAPAAAPAAAPAAGGGGTI 123

>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
            factor-like domains 1)
          Length = 4351

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 226  CSTPAPAPGQWCAPAAIGILGGSCAITYGRERTSW 122
            C+ P P  G  C   A G  GG C IT   +R  W
Sbjct: 4012 CNCPHPYTGDRCEMEARGCSGGHCLITPEIKRGDW 4046

>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois|
           homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 221 HAGSGAGPVVRPGSHRDLGRELRHYVRSRADELAR 117
           H G G GP   PGSH +    L   V +RAD LA+
Sbjct: 423 HPGPGPGPTTGPGSHFN---GLNQTVLNRADALAK 454

>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor (BLV-R)|
           (BLVPCP1)
          Length = 843

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = -1

Query: 241 GPWPWCSTPAPAPGQWCAPAAIGILGG-----SCAITYGR 137
           GP PW   PA   G+W    A+ +L        C  T GR
Sbjct: 744 GPGPWPPCPAACCGEWWRATALALLSSLDALQVCVCTCGR 783

>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein|
           18) (Small proline-rich-like epidermal differentiation
           complex protein 5A)
          Length = 118

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 232 PWCSTPAPAPGQWCAPAAIG----ILGGSCAITYGRERTS 125
           P CS P P P   C  ++ G      GG C +++ R R S
Sbjct: 38  PQCSAPCPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPRQS 77

>MAML1_HUMAN (Q92585) Mastermind-like protein 1 (Mam-1)|
          Length = 1016

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 232 PWCSTPAPAPGQWCAPAAIGILGGSCAITYGRERTSWPGNAQQ 104
           P  +TPAPAPGQ       G    S  + Y  E+ + P + +Q
Sbjct: 415 PQQATPAPAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQ 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.127    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,423,908
Number of Sequences: 219361
Number of extensions: 670985
Number of successful extensions: 2696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2690
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)