>SUS_DROME (P22293) Protein suppressor of sable|
          Length = 1325

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
 Frame = +2

Query: 152  VLVPASSSPES--RCAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAPLAPRLPCAR 325
            ++ P+S S ++  RCA  + + DL T+             +R S+ S   P    LP   
Sbjct: 957  IMGPSSFSVDNIARCATTIASPDLETA-------------VRDSTPSSPPPSVVNLPSMS 1003

Query: 326  V-----RLPPPSAAAERPSLRFKPRG-------AAPTKG 406
            V     R+PPP+   E+P++R  PR         APTKG
Sbjct: 1004 VPPPSMRVPPPNIQVEKPTVRTDPRRDPRRAVLQAPTKG 1042

>LRIG2_HUMAN (O94898) Leucine-rich repeats and immunoglobulin-like domains|
           protein 2 precursor (LIG-2)
          Length = 1065

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +2

Query: 188 CAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAPLAPRLPCARVRLPPPS 346
           C  R+L+R L  + + L  + +AG GL  +  SC  PL   L C+R +LP PS
Sbjct: 16  CRSRVLSRLLFIAQTALLLLPAAGAGLCPAPCSCRIPL---LDCSRRKLPAPS 65

>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog|
           (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes)
          Length = 196

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 293 APLAPRLPCARVRLPPPSAAAERPSLRFKPRGAAPTKGWR 412
           A LAP +P A    P  +AAA    +R+ P   A  +GW+
Sbjct: 152 AELAPAIPHAAFTYPAAAAAALHAQMRWYPPSEATQQGWK 191

>NCAP_NIPAV (Q9IK92) Nucleoprotein (Protein N) (Nucleocapsid protein)|
          Length = 532

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 134 LSARARVLVPASSSPESRCAVRLLARDLVTSSS 232
           L+ + R+ VPA++SPE R  + L A D++ S S
Sbjct: 31  LTTKIRIFVPATNSPELRWELTLFALDVIRSPS 63

>NCAP_HENDV (O89339) Nucleoprotein (Protein N) (Nucleocapsid protein)|
          Length = 532

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 134 LSARARVLVPASSSPESRCAVRLLARDLVTSSS 232
           L+ + R+ VPA++SPE R  + L A D++ S S
Sbjct: 31  LTTKIRIFVPATNSPELRWELTLFALDVIRSPS 63

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 28/82 (34%), Positives = 33/82 (40%)
 Frame = +2

Query: 152 VLVPASSSPESRCAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAPLAPRLPCARVR 331
           +++  S  P  R          V+SSS     G  G GL  SS     P A   P  RVR
Sbjct: 363 IVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPGGGGLPQSSGRAARPRAAVAP--RVR 420

Query: 332 LPPPSAAAERPSLRFKPRGAAP 397
            PP +AAA   S      G AP
Sbjct: 421 SPPRAAAAPVVSASADAAGPAP 442

>FXL17_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat|
           protein 17) (F-box only protein 13) (Fragment)
          Length = 462

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = +2

Query: 122 CCGLLSARARVLVPASSSPESRCA-VRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAP 298
           CC         L PA +SP S CA +   A D V +    P   SA          C  P
Sbjct: 7   CCQAPEQPPPPLCPAPASPASECAPIVAAAGDTVRAGGTAP--SSAQQQPESGDADCQEP 64

Query: 299 LAPRLPCARVRLPPP 343
             P  PC   R PPP
Sbjct: 65  --PENPCDCHREPPP 77

>GDF1_HUMAN (P27539) Embryonic growth/differentiation factor 1 precursor|
           (GDF-1)
          Length = 372

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +2

Query: 290 LAPLAPRLPCARVRLPPPSAAA--ERPSLRFKPRGA-----APTKGWRL 415
           LA L P LP  R  +PP  AAA  +   LR +P+GA      P   WRL
Sbjct: 17  LALLLPSLPLTRAPVPPGPAAALLQALGLRDEPQGAPRLRPVPPVMWRL 65

>EPSA2_RALSO (Q45407) EPS I polysaccharide export outer membrane protein epsA|
           precursor
          Length = 377

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 136 VRTRPRPGPRLVVTGVALRRSPPCPRPRDLLLSPALNRFCGL 261
           VR  PR   ++ VTG  +R S   PR   L LS AL    G+
Sbjct: 256 VRVEPREDSKVFVTGEVVRPSTVLPRNGKLTLSEALGEAGGV 297

>ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)|
           (Unc-51-like kinase 2)
          Length = 1036

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +2

Query: 128 GLLSARARVLVPASSSPESRCAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCL-APLA 304
           G  ++   VL    S P S  A       L T ++ +    S G    MS   C+ +P  
Sbjct: 715 GTAASSKAVLFTVGSPPHSAAAPTCTHMFLRTRTTSVGPSNSGGSLCAMSGRVCVGSPPG 774

Query: 305 PRLPCARVRLPPPSAAAERPSLRFKPRGAAP 397
           P    +     PP A A  PSLR+ P GA+P
Sbjct: 775 PGFGSS-----PPGAEAA-PSLRYVPYGASP 799

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A|
           subunit (Voltage-gated calcium channel alpha subunit
           Cav2.1) (Calcium channel, L type, alpha-1 polypeptide
           isoform 4) (Brain calcium channel I) (BI)
          Length = 2164

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
 Frame = -3

Query: 106 AHPRRHARDSGVERAAP----REPGR-------SEFADGEQAPPR 5
           A PR  ARD    RA P    R PGR       SE    E APPR
Sbjct: 801 ARPRESARDPDARRAWPGSPERAPGREGPYGRESELQQREHAPPR 845

>NRG1_XENLA (O93383) Pro-neuregulin-1, membrane-bound isoform precursor|
           (Pro-NRG1) [Contains: Neuregulin-1]
          Length = 677

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 269 RMSSTSCLAPLAPRLPCARVRLPPPSAAAERPSLRFKP 382
           RMS      P++P+ PC     P  S A   PS+   P
Sbjct: 453 RMSPVEFKTPISPKSPCLETSPPESSLAVSVPSVAVSP 490


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,790,142
Number of Sequences: 219361
Number of extensions: 1043433
Number of successful extensions: 3578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3574
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)