ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast60e06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C21, full insert sequence Length = 1751 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 388 ggctgctcccactaagggatggaggctggttcacctctcgtgcttcaggcaggag 442 ||||||||| | ||||||||||||||||| | | |||| ||||||||||||||| Sbjct: 177 ggctgctccggccaagggatggaggctggtgcgcgtctcctgcttcaggcaggag 231
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 402 agggatggaggctggttcacctctcgtgcttcaggcaggag 442 |||||||||||||||| | | |||| ||||||||||||||| Sbjct: 17756021 agggatggaggctggtgcgcgtctcctgcttcaggcaggag 17756061 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 acctcctcctctctcctgccc 241 ||||||||||||||||||||| Sbjct: 13345537 acctcctcctctctcctgccc 13345517 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 14311753 acctccctccgccgccgccg 14311772 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 8453616 acctccctccgccgccgccg 8453635 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 8448065 acctccctccgccgccgccg 8448084
>dbj|AP004743.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026G06 Length = 123129 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 402 agggatggaggctggttcacctctcgtgcttcaggcaggag 442 |||||||||||||||| | | |||| ||||||||||||||| Sbjct: 26443 agggatggaggctggtgcgcgtctcctgcttcaggcaggag 26483
>gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosome 3, complete sequence Length = 168853 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 cgggtgcgcccgcgcccccacc 119 |||||||||||||||||||||| Sbjct: 133553 cgggtgcgcccgcgcccccacc 133574
>ref|NM_028188.1| Mus musculus RUN and SH3 domain containing 1 (Rusc1), mRNA Length = 3707 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 cgggtgcgcccgcgcccccacc 119 |||||||||||||||||||||| Sbjct: 1539 cgggtgcgcccgcgcccccacc 1518
>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence Length = 218929 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 cgggtgcgcccgcgcccccacc 119 |||||||||||||||||||||| Sbjct: 84609 cgggtgcgcccgcgcccccacc 84630
>emb|AL590072.7| Human DNA sequence from clone RP11-154J12 on chromosome 10, complete sequence Length = 112445 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 cctcctcctctctcctgcccta 243 |||||||||||||||||||||| Sbjct: 93479 cctcctcctctctcctgcccta 93458
>dbj|AK039664.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330080H03 product:NESCA PROTEIN homolog [Homo sapiens], full insert sequence Length = 3707 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 cgggtgcgcccgcgcccccacc 119 |||||||||||||||||||||| Sbjct: 1539 cgggtgcgcccgcgcccccacc 1518
>emb|BX470216.11| Mouse DNA sequence from clone RP23-390M8 on chromosome 4, complete sequence Length = 162454 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 331 gctcccacctccctccgccgcc 352 |||||||||||||||||||||| Sbjct: 33036 gctcccacctccctccgccgcc 33057
>ref|XM_471509.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1464 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 85 tcgcgtggcgccgcgggtgcgcccgcgcc 113 ||||| |||||||||||||||||| |||| Sbjct: 404 tcgcgcggcgccgcgggtgcgcccacgcc 432
>emb|AL139014.6| Human DNA sequence from clone RP4-586O15 on chromosome 1p21.2-22.2 Contains the 3' end of the RWDD3 gene for RWD domain containing 3 and two novel genes, complete sequence Length = 101384 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 aggccatcactcagatttaag 379 ||||||||||||||||||||| Sbjct: 44628 aggccatcactcagatttaag 44608
>gb|AC092802.2| Homo sapiens chromosome 1 clone RP11-57H12, complete sequence Length = 163331 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 aggccatcactcagatttaag 379 ||||||||||||||||||||| Sbjct: 157609 aggccatcactcagatttaag 157589
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 85 tcgcgtggcgccgcgggtgcgcccgcgcc 113 ||||| |||||||||||||||||| |||| Sbjct: 11507047 tcgcgcggcgccgcgggtgcgcccacgcc 11507075 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 30953131 cctccctccgccgccgccga 30953150
>gb|AC079031.39| Homo sapiens 12 BAC RP11-503G7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89059 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 ctcccacctccctccgccgcc 352 ||||||||||||||||||||| Sbjct: 16677 ctcccacctccctccgccgcc 16697
>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427E01 Length = 146395 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 acctcctcctctctcctgccc 241 ||||||||||||||||||||| Sbjct: 107347 acctcctcctctctcctgccc 107327
>dbj|AP003952.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1294_G12 Length = 121979 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 acctcctcctctctcctgccc 241 ||||||||||||||||||||| Sbjct: 6969 acctcctcctctctcctgccc 6949
>dbj|AK100189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034P03, full insert sequence Length = 1621 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 85 tcgcgtggcgccgcgggtgcgcccgcgcc 113 ||||| |||||||||||||||||| |||| Sbjct: 418 tcgcgcggcgccgcgggtgcgcccacgcc 446
>dbj|AK068604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157G05, full insert sequence Length = 4296 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 85 tcgcgtggcgccgcgggtgcgcccgcgcc 113 ||||| |||||||||||||||||| |||| Sbjct: 3098 tcgcgcggcgccgcgggtgcgcccacgcc 3126
>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09, complete sequence Length = 148191 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 85 tcgcgtggcgccgcgggtgcgcccgcgcc 113 ||||| |||||||||||||||||| |||| Sbjct: 132660 tcgcgcggcgccgcgggtgcgcccacgcc 132688
>ref|XM_473844.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2910 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 44 cctccctccgccgccgccga 25
>gb|AY530156.1| Dunaliella tertiolecta ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (rbcS2) gene, complete cds Length = 3321 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cctcctcctctctcctgccc 241 |||||||||||||||||||| Sbjct: 1789 cctcctcctctctcctgccc 1808
>gb|AY162201.1| Cymodocea nodosa Cn4-27 microsatellite sequence Length = 433 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tccctccgccgccgccgaga 359 |||||||||||||||||||| Sbjct: 135 tccctccgccgccgccgaga 154
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 95049 acctccctccgccgccgccg 95030
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 tcgtcaccggagtcgcgctgcgcc 193 ||||||||| |||||||||||||| Sbjct: 188223 tcgtcaccgaagtcgcgctgcgcc 188246
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16, complete sequence Length = 175425 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 cccacctccctccgccgccgccga 357 ||||||||||||||||| |||||| Sbjct: 40068 cccacctccctccgccgacgccga 40091
>ref|XM_423907.1| PREDICTED: Gallus gallus similar to coiled-coil domain containing 3 (LOC426244), mRNA Length = 1815 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ctcctcctctctcctgccct 242 |||||||||||||||||||| Sbjct: 1429 ctcctcctctctcctgccct 1448
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 tcgtcaccggagtcgcgctgcgcc 193 ||||||||| |||||||||||||| Sbjct: 870459 tcgtcaccgaagtcgcgctgcgcc 870482
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 26655520 acctccctccgccgccgccg 26655501
>ref|XM_381341.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01165.1) partial mRNA Length = 2814 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 agaggccatcactcagattt 376 |||||||||||||||||||| Sbjct: 642 agaggccatcactcagattt 661
>emb|Z93021.2|HS516C23 Human DNA sequence from clone RP3-516C23 on chromosome 6q12 Contains the 5' end of the KHDRBS2 gene for KH domain containing RNA binding signal transduction associated protein 2, complete sequence Length = 116685 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctcccacctccctccgccgc 351 |||||||||||||||||||| Sbjct: 42375 ctcccacctccctccgccgc 42394
>emb|AL031447.4|HS126A5 Human DNA sequence from clone RP1-126A5 on chromosome 1p36.21-36.33 Contains the 3' end of the gene for a novel DnaJ domain-containing protein, the gene for a novel THAP domain-containing protein, the PHF13 gene for PHD finger protein 13, the gene for a novel protein (KIAA0469), the 3' end of the HKR3 gene for GLI-Kruppel family member HKR3 and two CpG islands, complete sequence Length = 112158 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 cctcctcctctctcctgccc 241 |||||||||||||||||||| Sbjct: 74515 cctcctcctctctcctgccc 74496
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 tcgtcaccggagtcgcgctgcgcc 193 ||||||||| |||||||||||||| Sbjct: 712854 tcgtcaccgaagtcgcgctgcgcc 712877
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 50503 cctccctccgccgccgccga 50522
>emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 in linkage group 10, complete sequence Length = 195419 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 acctcctcctctctcctgcc 240 |||||||||||||||||||| Sbjct: 116271 acctcctcctctctcctgcc 116252
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 80655 acctccctccgccgccgccg 80674 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 74283 acctccctccgccgccgccg 74302
>gb|AE005861.1| Caulobacter crescentus CB15 section 187 of 359 of the complete genome Length = 13017 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctcgtcgtcaccggagtcg 184 |||||||||||||||||||| Sbjct: 8201 cctcgtcgtcaccggagtcg 8182
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 120574 acctccctccgccgccgccg 120593
>ref|XM_685634.1| PREDICTED: Danio rerio similar to Ribosomal protein S6 kinase, polypeptide 1 (LOC562242), mRNA Length = 2370 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 acctcctcctctctcctgcc 240 |||||||||||||||||||| Sbjct: 2173 acctcctcctctctcctgcc 2192
>ref|XM_685571.1| PREDICTED: Danio rerio similar to ribosomal protein S6 kinase, polypeptide 1 (LOC562174), mRNA Length = 1242 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 acctcctcctctctcctgcc 240 |||||||||||||||||||| Sbjct: 1045 acctcctcctctctcctgcc 1064
>gb|AC090493.4| Genomic sequence for Mus musculus, clone RP23-201D19,, complete sequence Length = 208651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ctaagggatggaggctggtt 418 |||||||||||||||||||| Sbjct: 118709 ctaagggatggaggctggtt 118690
>gb|AC026436.4| Homo sapiens chromosome 5 clone CTD-2248H3, complete sequence Length = 100899 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tgcttcaggcaggagccaga 447 |||||||||||||||||||| Sbjct: 76582 tgcttcaggcaggagccaga 76563
>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete sequence Length = 140044 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 102320 acctccctccgccgccgccg 102339
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 25449470 acctccctccgccgccgccg 25449451
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 cccacctccctccgccgccgccga 357 ||||||||||||||||| |||||| Sbjct: 19171280 cccacctccctccgccgacgccga 19171303 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 6423655 acctccctccgccgccgccg 6423636
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 5075354 acctccctccgccgccgccg 5075373 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 5068982 acctccctccgccgccgccg 5069001
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 26746843 acctccctccgccgccgccg 26746824
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 32273972 acctccctccgccgccgccg 32273991 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 23343821 cctccctccgccgccgccga 23343840
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 144725 acctccctccgccgccgccg 144744
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 69519 cctccctccgccgccgccga 69538
>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0092H22 Length = 165194 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 68317 acctccctccgccgccgccg 68336 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 62766 acctccctccgccgccgccg 62785
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 130563 cctccctccgccgccgccga 130582
>dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0053G03 Length = 101901 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 6257 acctccctccgccgccgccg 6276
>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0022O02 Length = 176625 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 155217 acctccctccgccgccgccg 155236
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 39628 acctccctccgccgccgccg 39647
>ref|XM_313427.2| Anopheles gambiae str. PEST ENSANGP00000020164 (ENSANGG00000017675), partial mRNA Length = 888 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gcggcgcttgctccccgtcg 29 |||||||||||||||||||| Sbjct: 765 gcggcgcttgctccccgtcg 746
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 130135 cctccctccgccgccgccga 130154
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 tcgtcaccggagtcgcgctgcgcc 193 ||||||||| |||||||||||||| Sbjct: 620903 tcgtcaccgaagtcgcgctgcgcc 620926
>dbj|AB073639.1| Oryza sativa (japonica cultivar-group) OsRALyase1 gene for RNA apurinic site specific lyase, complete cds Length = 2175 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctccctccgccgccgccga 357 |||||||||||||||||||| Sbjct: 136 cctccctccgccgccgccga 155
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 5076141 acctccctccgccgccgccg 5076160 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 5069769 acctccctccgccgccgccg 5069788
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 cccacctccctccgccgccgccga 357 ||||||||||||||||| |||||| Sbjct: 19330829 cccacctccctccgccgacgccga 19330852 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 6490123 acctccctccgccgccgccg 6490104
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 25377646 acctccctccgccgccgccg 25377627
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 18852 acctccctccgccgccgccg 18833
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acctccctccgccgccgccg 356 |||||||||||||||||||| Sbjct: 116278 acctccctccgccgccgccg 116259
>emb|AL589650.20| Mouse DNA sequence from clone RP23-81H23 on chromosome 15, complete sequence Length = 197660 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ctaagggatggaggctggtt 418 |||||||||||||||||||| Sbjct: 27623 ctaagggatggaggctggtt 27604 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,853,122 Number of Sequences: 3902068 Number of extensions: 3853122 Number of successful extensions: 93453 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91545 Number of HSP's gapped (non-prelim): 1908 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
