ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60e04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK112051.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E03, full insert sequence Length = 636 Score = 355 bits (179), Expect = 8e-95 Identities = 245/267 (91%) Strand = Plus / Plus Query: 64 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 123 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 52 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 111 Query: 124 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaacg 183 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 112 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 171 Query: 184 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 172 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 231 Query: 244 agctcgagcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaaga 303 |||||||||||||||| || ||||| |||||||| |||||||| || ||||||||||| | Sbjct: 232 agctcgagcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaa 291 Query: 304 actttggcaagaaggaatactgaagga 330 ||||||||||||| || || ||||||| Sbjct: 292 actttggcaagaaagagtattgaagga 318
>dbj|AK099388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076P14, full insert sequence Length = 473 Score = 355 bits (179), Expect = 8e-95 Identities = 245/267 (91%) Strand = Plus / Plus Query: 64 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 123 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 41 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 100 Query: 124 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaacg 183 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 101 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 160 Query: 184 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 161 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 220 Query: 244 agctcgagcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaaga 303 |||||||||||||||| || ||||| |||||||| |||||||| || ||||||||||| | Sbjct: 221 agctcgagcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaa 280 Query: 304 actttggcaagaaggaatactgaagga 330 ||||||||||||| || || ||||||| Sbjct: 281 actttggcaagaaagagtattgaagga 307
>gb|AY104951.1| Zea mays PCO082478 mRNA sequence Length = 673 Score = 295 bits (149), Expect = 6e-77 Identities = 206/225 (91%) Strand = Plus / Plus Query: 107 cggcggcgacttccggcagaaggtgtggagcatgacgggcgggccctactgccggcccgt 166 ||||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 156 cggcggcgacttccgccagaaggtatggagcatgacgggcggcccgtactgccgccccgt 215 Query: 167 ccactggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccat 226 |||||||||||| ||| |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 216 ccactggcgccgtaacaccgccatcgccatgttcggcgtcttcctcatctgcatccccat 275 Query: 227 cgccatgaaatccgccgagctcgagcaacgcccgcaccacccagtccggccaatcccatc 286 ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 276 cgctatgaagtccgcagagctcgagcaacgcccgcatcacccagtccggccaatcccatc 335 Query: 287 ccagctttggtgcaagaactttggcaagaaggaatactgaaggac 331 || || |||||||| |||||||| |||||||||||||||||||| Sbjct: 336 tcaactgtggtgcaaaaactttggtaagaaggaatactgaaggac 380
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 278 bits (140), Expect = 1e-71 Identities = 176/188 (93%) Strand = Plus / Minus Query: 64 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 123 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 21962929 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 21962870 Query: 124 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaacg 183 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 21962869 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 21962810 Query: 184 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 21962809 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 21962750 Query: 244 agctcgag 251 |||||||| Sbjct: 21962749 agctcgag 21962742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 250 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 309 |||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||||| Sbjct: 21961212 agcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaaactttg 21961153 Query: 310 gcaagaaggaatactgaagga 330 ||||||| || || ||||||| Sbjct: 21961152 gcaagaaagagtattgaagga 21961132 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 acggcccgagcggcggcgac 116 |||||||||||||||||||| Sbjct: 11786254 acggcccgagcggcggcgac 11786273
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 278 bits (140), Expect = 1e-71 Identities = 176/188 (93%) Strand = Plus / Minus Query: 64 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 123 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 4993 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 4934 Query: 124 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaacg 183 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 4933 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 4874 Query: 184 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 4873 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 4814 Query: 244 agctcgag 251 |||||||| Sbjct: 4813 agctcgag 4806 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 250 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 309 |||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||||| Sbjct: 3276 agcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaaactttg 3217 Query: 310 gcaagaaggaatactgaagga 330 ||||||| || || ||||||| Sbjct: 3216 gcaagaaagagtattgaagga 3196
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 278 bits (140), Expect = 1e-71 Identities = 176/188 (93%) Strand = Plus / Minus Query: 64 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 123 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 93646 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 93587 Query: 124 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaacg 183 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 93586 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 93527 Query: 184 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 93526 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 93467 Query: 244 agctcgag 251 |||||||| Sbjct: 93466 agctcgag 93459 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 250 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 309 |||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||||| Sbjct: 91929 agcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaaactttg 91870 Query: 310 gcaagaaggaatactgaagga 330 ||||||| || || ||||||| Sbjct: 91869 gcaagaaagagtattgaagga 91849
>gb|AY104915.1| Zea mays PCO082477 mRNA sequence Length = 1855 Score = 117 bits (59), Expect = 3e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 249 gagcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaacttt 308 |||||||||||||| ||||||||||||||||||||||| || || |||||||| |||||| Sbjct: 1616 gagcaacgcccgcatcacccagtccggccaatcccatctcaactgtggtgcaaaaacttt 1675 Query: 309 ggcaagaaggaatactgaaggac 331 || |||||||||||||||||||| Sbjct: 1676 ggtaagaaggaatactgaaggac 1698
>ref|NM_116283.2| Arabidopsis thaliana unknown protein AT4G00585 mRNA, complete cds Length = 558 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 186 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 245 Query: 231 a 231 | Sbjct: 246 a 246
>gb|AY091239.1| Arabidopsis thaliana unknown protein (At4g00585) mRNA, complete cds Length = 298 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 97 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 156 Query: 231 a 231 | Sbjct: 157 a 157
>gb|AY063842.1| Arabidopsis thaliana unknown protein (At4g00585) mRNA, complete cds Length = 565 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 184 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 243 Query: 231 a 231 | Sbjct: 244 a 244
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 gccatcgccatggtcggcatc 206 ||||||||||||||||||||| Sbjct: 1169646 gccatcgccatggtcggcatc 1169626
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 cgcaacgccgccatcgccatggtcg 201 |||| |||||||||||||||||||| Sbjct: 106652 cgcagcgccgccatcgccatggtcg 106628
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 cgcaacgccgccatcgccatggtcg 201 |||| |||||||||||||||||||| Sbjct: 3860 cgcagcgccgccatcgccatggtcg 3836
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 58875 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 58816 Query: 231 a 231 | Sbjct: 58815 a 58815
>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete sequence Length = 123020 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 250 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 309 ||||||| || || ||||| || || |||||||| ||||| | |||||||||||||||| Sbjct: 46621 agcaacgaccacatcacccggttcgtccaatcccttcccaaatgtggtgcaagaactttg 46562 Query: 310 g 310 | Sbjct: 46561 g 46561
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 cgcaacgccgccatcgccatggtcg 201 |||| |||||||||||||||||||| Sbjct: 20493232 cgcagcgccgccatcgccatggtcg 20493208 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 62 accggcggcggagatgggcggcgac 86 ||||||||||||||| ||||||||| Sbjct: 1951624 accggcggcggagatcggcggcgac 1951648
>emb|BX828090.1|CNS0A3SJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZB10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1370 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 189 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 248 Query: 231 a 231 | Sbjct: 249 a 249
>emb|BX827289.1|CNS0A3P8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS34ZC07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1365 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 173 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 232 Query: 231 a 231 | Sbjct: 233 a 233
>gb|AY085811.1| Arabidopsis thaliana clone 18459 mRNA, complete sequence Length = 550 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 184 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 243 Query: 231 a 231 | Sbjct: 244 a 244
>dbj|AK118700.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-96-J18 Length = 552 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 186 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 245 Query: 231 a 231 | Sbjct: 246 a 246
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 171 tggcgccgcaacgccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 230 ||||| || ||| ||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 40001 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 39942 Query: 231 a 231 | Sbjct: 39941 a 39941
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 tcgagcaacgcccgcaccacc 267 ||||||||||||||||||||| Sbjct: 1505347 tcgagcaacgcccgcaccacc 1505327
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 gcggcgaccatggcggccacggccc 103 ||||||||||||||||| ||||||| Sbjct: 4010629 gcggcgaccatggcggcgacggccc 4010605
>emb|AL663011.2|OSJN00215 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0080H08, complete sequence Length = 138127 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 62 accggcggcggagatgggcggcgac 86 ||||||||||||||| ||||||||| Sbjct: 94861 accggcggcggagatcggcggcgac 94885
>ref|NM_193237.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gggcggcgaccatggcggcc 96 |||||||||||||||||||| Sbjct: 316 gggcggcgaccatggcggcc 297
>ref|NM_186286.1| Oryza sativa (japonica cultivar-group), mRNA Length = 645 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccgccatcgccatggtcg 201 |||||||||||||||||||| Sbjct: 597 cgccgccatcgccatggtcg 616
>gb|BT019290.1| Zea mays clone Contig963.F mRNA sequence Length = 760 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 atcccatcccagctttggtgcaag 302 ||||||||||| |||||||||||| Sbjct: 187 atcccatcccatctttggtgcaag 164
>gb|AC149783.2| Bos taurus BAC CH240-3K17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 205084 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tgccttcttttgtcataacc 392 |||||||||||||||||||| Sbjct: 24505 tgccttcttttgtcataacc 24486
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gcaacgccgccatcgccatg 197 |||||||||||||||||||| Sbjct: 572267 gcaacgccgccatcgccatg 572248
>emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment 6/24 Length = 321950 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cagtccggccaatcccatcc 287 |||||||||||||||||||| Sbjct: 33863 cagtccggccaatcccatcc 33882
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cggccacggcccgagcggcg 111 |||||||||||||||||||| Sbjct: 1553144 cggccacggcccgagcggcg 1553163
>gb|DQ086111.1| Leishmania donovani promastigote surface antigen (PSAb) mRNA, complete cds Length = 1161 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gccgcaacgccgccatcgcc 194 |||||||||||||||||||| Sbjct: 1088 gccgcaacgccgccatcgcc 1069
>gb|DQ086110.1| Leishmania donovani promastigote surface antigen (PSAc) pseudogene mRNA, partial sequence Length = 1289 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gccgcaacgccgccatcgcc 194 |||||||||||||||||||| Sbjct: 1201 gccgcaacgccgccatcgcc 1182
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcgccatggtcggcatcttc 209 |||||||||||||||||||| Sbjct: 2428516 tcgccatggtcggcatcttc 2428497
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 gatgggcggcgaccatggcggcca 97 ||||||||||||||| |||||||| Sbjct: 3664609 gatgggcggcgaccagggcggcca 3664632
>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence Length = 201260 Score = 40.1 bits (20), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 343 ttcacaaagaanatcctgttttt 365 ||||||||||| ||||||||||| Sbjct: 89603 ttcacaaagaaaatcctgttttt 89625
>gb|AY437087.3| Leishmania donovani promastigote surface antigen (PSA) gene, partial cds Length = 1475 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gccgcaacgccgccatcgcc 194 |||||||||||||||||||| Sbjct: 494 gccgcaacgccgccatcgcc 475
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgccatcgccatggtcg 201 |||||||||||||||||||| Sbjct: 2321157 cgccgccatcgccatggtcg 2321138
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gggcggcgaccatggcggcc 96 |||||||||||||||||||| Sbjct: 19434487 gggcggcgaccatggcggcc 19434506
>dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086A10 Length = 151071 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gggcggcgaccatggcggcc 96 |||||||||||||||||||| Sbjct: 43303 gggcggcgaccatggcggcc 43322
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gcggcggcgacttccggcag 125 |||||||||||||||||||| Sbjct: 350878 gcggcggcgacttccggcag 350897
>gb|AC128714.15| Homo sapiens 3 BAC RP11-433C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109972 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 tttttacctttgtgccttcttttg 384 |||||||||||||||||| ||||| Sbjct: 47521 tttttacctttgtgcctttttttg 47544
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgccatcgccatggtcg 201 |||||||||||||||||||| Sbjct: 24165 cgccgccatcgccatggtcg 24146
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 acggcccgagcggcggcgac 116 |||||||||||||||||||| Sbjct: 29072 acggcccgagcggcggcgac 29091
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgccatcgccatggtcg 201 |||||||||||||||||||| Sbjct: 94856 cgccgccatcgccatggtcg 94837
>gb|AY110731.1| Zea mays CL6588_1 mRNA sequence Length = 874 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 atcccatcccagctttggtgcaag 302 ||||||||||| |||||||||||| Sbjct: 252 atcccatcccatctttggtgcaag 229
>emb|AL136298.5|CNS01DW2 Human chromosome 14 DNA sequence BAC R-134E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181532 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 363 tttacctttgtgccttcttttgtcataa 390 |||||||| ||||||||||||| ||||| Sbjct: 115196 tttaccttggtgccttcttttgccataa 115169
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 aactttggcaagaaggaata 322 |||||||||||||||||||| Sbjct: 1517226 aactttggcaagaaggaata 1517245
>dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-861E23, complete sequence Length = 181946 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gtctgcatccccatcgccat 232 |||||||||||||||||||| Sbjct: 62029 gtctgcatccccatcgccat 62048 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,898,155 Number of Sequences: 3902068 Number of extensions: 2898155 Number of successful extensions: 62431 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61349 Number of HSP's gapped (non-prelim): 1082 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
