ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467603.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1363 Score = 323 bits (163), Expect = 3e-85 Identities = 250/279 (89%) Strand = Plus / Plus Query: 174 catgttccatcgaggggtgaggccggtcctcggcggcatggaagaagggcgcggcgtgaa 233 ||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||| || Sbjct: 147 catgttccatcgaggggcgagaccggtgctcggcatggaggaaggagggcgcggcgtcaa 206 Query: 234 gcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagcagct 293 |||||||||||||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct: 207 gcggcccttcttcaccacccccgacgagctcctcgaagaggagtactacgacgagcagct 266 Query: 294 cccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcga 353 ||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 267 cccggagaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcga 326 Query: 354 ggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgca 413 |||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||| Sbjct: 327 ggaggagaacaagctggagccggagcggaagacggagctggcgcggaagctagggctgca 386 Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||||| ||||| ||||| |||||||||||||||||||| Sbjct: 387 gccgcggcaggtcgccgtgtggttccagaaccgccgcgc 425 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 43 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 102 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 103 ttcttggactgcggcgctggcg 124
>ref|XM_506952.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0072H09.24 mRNA Length = 1710 Score = 323 bits (163), Expect = 3e-85 Identities = 250/279 (89%) Strand = Plus / Plus Query: 174 catgttccatcgaggggtgaggccggtcctcggcggcatggaagaagggcgcggcgtgaa 233 ||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||| || Sbjct: 644 catgttccatcgaggggcgagaccggtgctcggcatggaggaaggagggcgcggcgtcaa 703 Query: 234 gcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagcagct 293 |||||||||||||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct: 704 gcggcccttcttcaccacccccgacgagctcctcgaagaggagtactacgacgagcagct 763 Query: 294 cccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcga 353 ||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 764 cccggagaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcga 823 Query: 354 ggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgca 413 |||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||| Sbjct: 824 ggaggagaacaagctggagccggagcggaagacggagctggcgcggaagctagggctgca 883 Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||||| ||||| ||||| |||||||||||||||||||| Sbjct: 884 gccgcggcaggtcgccgtgtggttccagaaccgccgcgc 922 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 540 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 599 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 600 ttcttggactgcggcgctggcg 621
>gb|AY559045.1| Oryza sativa homeodomain leucine zipper protein 16 (hox16) mRNA, complete cds Length = 1472 Score = 323 bits (163), Expect = 3e-85 Identities = 250/279 (89%) Strand = Plus / Plus Query: 174 catgttccatcgaggggtgaggccggtcctcggcggcatggaagaagggcgcggcgtgaa 233 ||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||| || Sbjct: 233 catgttccatcgaggggcgagaccggtgctcggcatggaggaaggagggcgcggcgtcaa 292 Query: 234 gcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagcagct 293 |||||||||||||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct: 293 gcggcccttcttcaccacccccgacgagctcctcgaagaggagtactacgacgagcagct 352 Query: 294 cccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcga 353 ||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 353 cccggagaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcga 412 Query: 354 ggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgca 413 |||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||| Sbjct: 413 ggaggagaacaagctggagccggagcggaagacggagctggcgcggaagctagggctgca 472 Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||||| ||||| ||||| |||||||||||||||||||| Sbjct: 473 gccgcggcaggtcgccgtgtggttccagaaccgccgcgc 511 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 129 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 188 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 189 ttcttggactgcggcgctggcg 210
>dbj|AK119592.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D05, full insert sequence Length = 1710 Score = 323 bits (163), Expect = 3e-85 Identities = 250/279 (89%) Strand = Plus / Plus Query: 174 catgttccatcgaggggtgaggccggtcctcggcggcatggaagaagggcgcggcgtgaa 233 ||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||| || Sbjct: 644 catgttccatcgaggggcgagaccggtgctcggcatggaggaaggagggcgcggcgtcaa 703 Query: 234 gcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagcagct 293 |||||||||||||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct: 704 gcggcccttcttcaccacccccgacgagctcctcgaagaggagtactacgacgagcagct 763 Query: 294 cccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcga 353 ||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 764 cccggagaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcga 823 Query: 354 ggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgca 413 |||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||| Sbjct: 824 ggaggagaacaagctggagccggagcggaagacggagctggcgcggaagctagggctgca 883 Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||||| ||||| ||||| |||||||||||||||||||| Sbjct: 884 gccgcggcaggtcgccgtgtggttccagaaccgccgcgc 922 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 540 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 599 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 600 ttcttggactgcggcgctggcg 621
>gb|AY105265.1| Zea mays PCO062717 mRNA sequence Length = 2229 Score = 317 bits (160), Expect = 2e-83 Identities = 220/240 (91%) Strand = Plus / Plus Query: 214 gaagaagggcgcggcgtgaagcggcccttcttcacctcgccggacgacctgctggaggag 273 ||||||||||||||||| || |||||||||||||||||||| ||||| || || ||||| Sbjct: 851 gaagaagggcgcggcgtaaaacggcccttcttcacctcgcccgacgagctcctcgaggaa 910 Query: 274 gagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggtccac 333 |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| | Sbjct: 911 gagtactacgacgagcagctgccggagaagaagcgccgcctcaccccagagcaggtgctt 970 Query: 334 ctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctg 393 |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct: 971 ctgctggagaggagcttcgaggaggagaacaagctggagccggagcgcaagacggagctg 1030 Query: 394 gcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 || |||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1031 gcgcgcaagctgggcctgcagcctcgccaggtggccgtctggttccagaaccgccgcgcc 1090 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 100 cggctcatcttcaacacgtcgggctccggcaacggacagatgctcttcatggactgcggc 159 ||||||||||||||| || ||||||| ||| ||| |||||||||||| | ||||||||| Sbjct: 731 cggctcatcttcaacgcgccgggctctggcgccgggcagatgctcttcctcgactgcggc 790 Query: 160 gccggcg 166 || |||| Sbjct: 791 gcaggcg 797
>gb|AY554029.1| Oryza sativa (japonica cultivar-group) clone R4057 Hox16 (hox16) mRNA, complete cds Length = 1199 Score = 309 bits (156), Expect = 4e-81 Identities = 219/240 (91%) Strand = Plus / Plus Query: 213 ggaagaagggcgcggcgtgaagcggcccttcttcacctcgccggacgacctgctggagga 272 ||||| |||||||||||| |||||||||||||||||| | || ||||| || || || || Sbjct: 37 ggaaggagggcgcggcgtcaagcggcccttcttcaccacccccgacgagctcctcgaaga 96 Query: 273 ggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggtcca 332 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct: 97 ggagtactacgacgagcagctcccggagaagaagcggcgcctcacgccggagcaggtgca 156 Query: 333 cctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagct 392 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 157 tctgctggagaggagcttcgaggaggagaacaagctggagccggagcggaagacggagct 216 Query: 393 ggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| || ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 217 ggcgcggaagctagggctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgc 276
>dbj|AK058364.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F09, full insert sequence Length = 1363 Score = 309 bits (156), Expect = 4e-81 Identities = 246/276 (89%) Strand = Plus / Plus Query: 177 gttccatcgaggggtgaggccggtcctcggcggcatggaagaagggcgcggcgtgaagcg 236 |||||||||||||| || ||||| |||||| ||||| |||||||||||| ||||| Sbjct: 150 gttccatcgaggggcaagaccggtgctcggcatggaggaaggagggcgcggcgtcaagcg 209 Query: 237 gcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagcagctccc 296 ||||||||||||| | || ||||| || || || |||||||||||||||||||||||||| Sbjct: 210 gcccttcttcaccacccccgacgagctcctcgaagaggagtactacgacgagcagctccc 269 Query: 297 ggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcgagga 356 |||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 270 ggagaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgagga 329 Query: 357 ggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagcc 416 ||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| Sbjct: 330 ggagaacaagctggagccggagcggaagacggagctggcgcggaagctagggctgcagcc 389 Query: 417 gcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| ||||| ||||| |||||||||||||||||||| Sbjct: 390 gcggcaggtcgccgtgtggttccagaaccgccgcgc 425 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 43 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 102 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 103 ttcttggactgcggcgctggcg 124
>ref|XM_482406.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1837 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 680 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 739 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 740 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 799 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 800 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 859 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 860 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 902
>ref|XM_507232.1| PREDICTED Oryza sativa (japonica cultivar-group), P0433E10.14 mRNA Length = 1855 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 679 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 738 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 739 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 798 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 799 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 858 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 859 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 901
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 19880369 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 19880310 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 19880309 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 19880250 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 19880249 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 19880190 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 19880189 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 19880147 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Minus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||| Sbjct: 23797474 gctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggc 23797415 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 23797414 gcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 23797358 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 22822900 gtctggttccagaaccgccg 22822881 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcggcgccggcgccgccggc 174 |||||||||||||||||||| Sbjct: 9093050 gcggcgccggcgccgccggc 9093031
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 172 bits (87), Expect = 6e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 334 ctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctg 393 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 30400811 ctgctggagaggagcttcgaggaggagaacaagctggagccggagcggaagacggagctg 30400870 Query: 394 gcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 || || ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 30400871 gcgcggaagctagggctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgc 30400929 Score = 145 bits (73), Expect = 1e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 213 ggaagaagggcgcggcgtgaagcggcccttcttcacctcgccggacgacctgctggagga 272 ||||| |||||||||||| |||||||||||||||||| | || ||||| || || || || Sbjct: 30400578 ggaaggagggcgcggcgtcaagcggcccttcttcaccacccccgacgagctcctcgaaga 30400637 Query: 273 ggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggt 329 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 30400638 ggagtactacgacgagcagctcccggagaagaagcggcgcctcacgccggagcaggt 30400694 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 30400335 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 30400394 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 30400395 ttcttggactgcggcgctggcg 30400416 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct: 26162176 gaaggcggagctggcgcgggagctcgggctgcagccgcgccaggtggccatctggttcca 26162235 Query: 441 gaac 444 |||| Sbjct: 26162236 gaac 26162239 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 8538489 cggcgccggcgccgccggca 8538508
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 48547 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 48488 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 48487 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 48428 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 48427 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 48368 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 48367 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 48325
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 172 bits (87), Expect = 6e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 334 ctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctg 393 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 81671 ctgctggagaggagcttcgaggaggagaacaagctggagccggagcggaagacggagctg 81730 Query: 394 gcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 || || ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 81731 gcgcggaagctagggctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgc 81789 Score = 145 bits (73), Expect = 1e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 213 ggaagaagggcgcggcgtgaagcggcccttcttcacctcgccggacgacctgctggagga 272 ||||| |||||||||||| |||||||||||||||||| | || ||||| || || || || Sbjct: 81438 ggaaggagggcgcggcgtcaagcggcccttcttcaccacccccgacgagctcctcgaaga 81497 Query: 273 ggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggt 329 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 81498 ggagtactacgacgagcagctcccggagaagaagcggcgcctcacgccggagcaggt 81554 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 81195 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 81254 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 81255 ttcttggactgcggcgctggcg 81276
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 172 bits (87), Expect = 6e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 334 ctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctg 393 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 6859 ctgctggagaggagcttcgaggaggagaacaagctggagccggagcggaagacggagctg 6918 Query: 394 gcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 || || ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 6919 gcgcggaagctagggctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgc 6977 Score = 145 bits (73), Expect = 1e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 213 ggaagaagggcgcggcgtgaagcggcccttcttcacctcgccggacgacctgctggagga 272 ||||| |||||||||||| |||||||||||||||||| | || ||||| || || || || Sbjct: 6626 ggaaggagggcgcggcgtcaagcggcccttcttcaccacccccgacgagctcctcgaaga 6685 Query: 273 ggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggt 329 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 6686 ggagtactacgacgagcagctcccggagaagaagcggcgcctcacgccggagcaggt 6742 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 85 gcgatggagcccggccggctcatcttcaacacgtcgggctccggcaacggacagatgctc 144 ||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||| Sbjct: 6383 gcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctc 6442 Query: 145 ttcatggactgcggcgccggcg 166 ||| ||||||||||||| |||| Sbjct: 6443 ttcttggactgcggcgctggcg 6464
>gb|AF145729.1|AF145729 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA, complete cds Length = 1538 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 396 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 455 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 456 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 515 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 516 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 575 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 576 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 618
>dbj|AK110561.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C12, full insert sequence Length = 1269 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 289 gaagcggccgttcttcacgacgcacgaggaactcctggaggaggagtactacgacgagca 348 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 349 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 408 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 409 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 468 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 469 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 511
>dbj|AK101569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050G15, full insert sequence Length = 1836 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 679 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 738 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 739 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 798 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 799 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 858 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 859 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 901
>dbj|AK100634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110A12, full insert sequence Length = 1854 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 231 gaagcggcccttcttcacctcgccggacgacctgctggaggaggagtactacgacgagca 290 ||||||||| |||||||| ||| || || || |||||||||||||||||||||||||| Sbjct: 678 gaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagca 737 Query: 291 gctcccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagctt 350 | |||||||||||||| || || || |||||||||| || |||||||| ||||||| Sbjct: 738 ggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagctt 797 Query: 351 cgaggaggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggct 410 ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | Sbjct: 798 cgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcat 857 Query: 411 gcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 | || || ||||| ||||||||||||||||||||||||||| Sbjct: 858 ggccccccggcaggtcgccgtctggttccagaaccgccgcgcc 900
>gb|AF264731.1|AF264731 Oryza sativa microsatellite 25CAC sequence Length = 1201 Score = 151 bits (76), Expect = 2e-33 Identities = 110/120 (91%), Gaps = 1/120 (0%) Strand = Plus / Plus Query: 334 ctgctggagaggagcttcgaggaggagaa-caagctggagccggaaaggaagacggagct 392 ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 192 ctgctggagaggagcttcgaggaggagaaacaagctggagccggagcggaagacggagct 251 Query: 393 ggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| || ||||| ||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 252 ggcgcggaagctatggctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgc 311 Score = 79.8 bits (40), Expect = 7e-12 Identities = 55/59 (93%), Gaps = 2/59 (3%) Strand = Plus / Plus Query: 271 gaggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggt 329 |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 19 gaggagtactac--cgagcagctcccggagaagaagcggcgcctcacgccggagcaggt 75
>ref|XM_482997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1412 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||| Sbjct: 659 gctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggc 718 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 719 gcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 775
>ref|XM_507271.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0092C08.26 mRNA Length = 1916 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||| Sbjct: 656 gctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggc 715 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 716 gcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 772
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Minus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||| Sbjct: 86674 gctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggc 86615 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 86614 gcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 86558
>dbj|AK106818.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D05, full insert sequence Length = 1927 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||| Sbjct: 656 gctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggc 715 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 716 gcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 772
>dbj|AK068244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140I04, full insert sequence Length = 1412 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||| Sbjct: 659 gctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggc 718 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 719 gcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 775
>gb|AY104388.1| Zea mays PCO136074 mRNA sequence Length = 1227 Score = 137 bits (69), Expect = 4e-29 Identities = 156/185 (84%) Strand = Plus / Plus Query: 268 gaggaggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcag 327 |||||||||||||||||||||||| |||||||||||||| || || || |||||||| Sbjct: 959 gaggaggagtactacgacgagcaggcgccggagaagaagcgccgactgacggcggagcag 1018 Query: 328 gtccacctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacg 387 || || ||||||||| |||||||||| || |||||||||||||||||||| | ||||| Sbjct: 1019 gtgcagctgctggagcggagcttcgaagaagagaacaagctggagccggagcgcaagacc 1078 Query: 388 gagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgc 447 |||||||| ||| || ||| || ||| |||||||| || || ||||||||||||||| Sbjct: 1079 gagctggctcgccgcctggggatggcgccccgccaggtagctgtttggttccagaaccgc 1138 Query: 448 cgcgc 452 ||||| Sbjct: 1139 cgcgc 1143
>gb|BT018458.1| Zea mays clone EL01N0412H10.d mRNA sequence Length = 1209 Score = 131 bits (66), Expect = 2e-27 Identities = 134/157 (85%) Strand = Plus / Plus Query: 297 ggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcgagga 356 |||||||||||| ||||| | | | |||||||| | | ||||||| |||||||||||| Sbjct: 429 ggagaagaagcggcgcctgagctccgagcaggtgcgcgcgctggagcggagcttcgaggt 488 Query: 357 ggagaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagcc 416 ||||||||||||||||||||| | ||| || |||||| ||| | ||| | |||||||| Sbjct: 489 ggagaacaagctggagccggagcgcaaggcgcggctggcgcgcgacctcngcctgcagcc 548 Query: 417 gcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||||||| ||||||||||||||||||||||||||| Sbjct: 549 gcgccaggtcgccgtctggttccagaaccgccgcgcc 585
>ref|XM_506668.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1595_D08.21 mRNA Length = 1473 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 514 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 573 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 574 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 630
>ref|XM_450967.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1463 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 518 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 577 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 578 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 634
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 17849147 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 17849206 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 17849207 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 17849263 Score = 75.8 bits (38), Expect = 1e-10 Identities = 100/120 (83%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 336 gctggagaggagcttcgaggaggagaac---aagctggagccggaaaggaagacggagct 392 ||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||| Sbjct: 12729051 gctggagcggagcttcgaggaggagaagcggaagctggagccggagcggaagagcgagct 12728992 Query: 393 ggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| || |||||| | |||||| ||||||||||| |||||||||||||||||||| Sbjct: 12728991 ggcgcggcgtctcgggatcgcgccgcggcaggtggccgtgtggttccagaaccgccgcgc 12728932 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 401 agctcgggctgcagccgcgccaggtggccgtctggttccagaac 444 ||||||| |||||||| |||||||| ||| |||||||||||||| Sbjct: 20370859 agctcggcctgcagcctcgccaggtcgccatctggttccagaac 20370902 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 |||||||||||||| || ||||||||||||||||||||| Sbjct: 16620727 gccgcgccaggtggaggtgtggttccagaaccgccgcgcc 16620688
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1595_D08 Length = 116351 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 89791 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 89850 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 89851 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 89907
>gb|AF145728.1|AF145728 Oryza sativa homeodomain leucine zipper protein (Oshox4) mRNA, complete cds Length = 1423 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 484 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 543 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 544 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 600
>dbj|AK099710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077J22, full insert sequence Length = 1463 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 518 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 577 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 578 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 634
>dbj|AK105484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B05, full insert sequence Length = 1473 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| |||||||||||| ||||| || ||||| || |||||| Sbjct: 514 gctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggc 573 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 574 gcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgc 630
>gb|DQ353856.1| Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds Length = 1126 Score = 115 bits (58), Expect = 1e-22 Identities = 103/118 (87%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 |||||||| || |||||||| || ||||||||||||||||| | |||| | ||||||| Sbjct: 398 gctggagaagaacttcgaggtggccaacaagctggagccggagcgcaagatgcagctggc 457 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 |||| ||| |||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 458 ccgcgcgctggggctgcagccgcggcaggtggccatctggttccagaaccgccgcgcc 515
>ref|NM_196409.1| Oryza sativa (japonica cultivar-group) putative homeotic protein (OSJNBb0044I14.6), mRNA Length = 1056 Score = 113 bits (57), Expect = 5e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| | |||||||||||||||||| ||||| || ||||||| Sbjct: 345 gctggagcggagcttcgagtccgggaacaagctggagccggagcggaaggcgcagctggc 404 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 405 gcgcgcgctggggctgcagccgcggcaggtggccatctggttccagaaccgccgcgc 461
>ref|XM_470308.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1571 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 360 gaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagccgcg 419 |||||||||||||||||| |||||| | |||| |||||| |||||||||||||||||| Sbjct: 447 gaacaagctggagccggagcggaagatgcagctcgcccgcgcgctcgggctgcagccgcg 506 Query: 420 ccaggtggccgtctggttccagaaccgccgcgc 452 ||||||||| |||||||||||||||||||||| Sbjct: 507 tcaggtggccatctggttccagaaccgccgcgc 539
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 360 gaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagccgcg 419 |||||||||||||||||| |||||| | |||| |||||| |||||||||||||||||| Sbjct: 3768100 gaacaagctggagccggagcggaagatgcagctcgcccgcgcgctcgggctgcagccgcg 3768041 Query: 420 ccaggtggccgtctggttccagaaccgccgcgc 452 ||||||||| |||||||||||||||||||||| Sbjct: 3768040 tcaggtggccatctggttccagaaccgccgcgc 3768008 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 4635407 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 4635457 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||||||||||||| Sbjct: 5149836 caggtcgccgtctggttccagaaccgccgcgcc 5149804
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 113 bits (57), Expect = 5e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| | |||||||||||||||||| ||||| || ||||||| Sbjct: 136234 gctggagcggagcttcgagtccgggaacaagctggagccggagcggaaggcgcagctggc 136293 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 136294 gcgcgcgctggggctgcagccgcggcaggtggccatctggttccagaaccgccgcgc 136350
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 113 bits (57), Expect = 5e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| | |||||||||||||||||| ||||| || ||||||| Sbjct: 40308 gctggagcggagcttcgagtccgggaacaagctggagccggagcggaaggcgcagctggc 40249 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 40248 gcgcgcgctggggctgcagccgcggcaggtggccatctggttccagaaccgccgcgc 40192
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence Length = 160738 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 360 gaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagccgcg 419 |||||||||||||||||| |||||| | |||| |||||| |||||||||||||||||| Sbjct: 13277 gaacaagctggagccggagcggaagatgcagctcgcccgcgcgctcgggctgcagccgcg 13336 Query: 420 ccaggtggccgtctggttccagaaccgccgcgc 452 ||||||||| |||||||||||||||||||||| Sbjct: 13337 tcaggtggccatctggttccagaaccgccgcgc 13369
>gb|DQ353855.1| Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-1 mRNA, complete cds Length = 963 Score = 113 bits (57), Expect = 5e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 337 ctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggcc 396 |||||| |||||||||||| ||||||||||||||||||||| | ||| || |||||| Sbjct: 196 ctggagcggagcttcgaggtggagaacaagctggagccggagcgcaaggcgcggctggcg 255 Query: 397 cgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccg 449 ||| | || || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 256 cgcgaccttggcctgcagccgcgccaggtcgccgtctggttccagaaccgccg 308
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 360 gaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagccgcg 419 |||||||||||||||||| |||||| | |||| |||||| |||||||||||||||||| Sbjct: 46724 gaacaagctggagccggagcggaagatgcagctcgcccgcgcgctcgggctgcagccgcg 46665 Query: 420 ccaggtggccgtctggttccagaaccgccgcgc 452 ||||||||| |||||||||||||||||||||| Sbjct: 46664 tcaggtggccatctggttccagaaccgccgcgc 46632
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 113 bits (57), Expect = 5e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| | |||||||||||||||||| ||||| || ||||||| Sbjct: 13289985 gctggagcggagcttcgagtccgggaacaagctggagccggagcggaaggcgcagctggc 13290044 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 13290045 gcgcgcgctggggctgcagccgcggcaggtggccatctggttccagaaccgccgcgc 13290101 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| ||| ||||||||||| ||||| ||||| | | | || Sbjct: 11526528 gctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgc 11526587 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| | || | || || || |||||||| |||||||||||||||||||||||||| Sbjct: 11526588 ccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgc 11526644 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 13005877 cggcgccggcgccgccggca 13005896
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 360 gaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagccgcg 419 |||||||||||||||||| |||||| | |||| |||||| |||||||||||||||||| Sbjct: 3768211 gaacaagctggagccggagcggaagatgcagctcgcccgcgcgctcgggctgcagccgcg 3768152 Query: 420 ccaggtggccgtctggttccagaaccgccgcgc 452 ||||||||| |||||||||||||||||||||| Sbjct: 3768151 tcaggtggccatctggttccagaaccgccgcgc 3768119 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 4635522 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 4635572 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||||||||||||| Sbjct: 5149053 caggtcgccgtctggttccagaaccgccgcgcc 5149021
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 113 bits (57), Expect = 5e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||||||||||| | |||||||||||||||||| ||||| || ||||||| Sbjct: 13297325 gctggagcggagcttcgagtccgggaacaagctggagccggagcggaaggcgcagctggc 13297384 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 13297385 gcgcgcgctggggctgcagccgcggcaggtggccatctggttccagaaccgccgcgc 13297441 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| ||| ||||||||||| ||||| ||||| | | | || Sbjct: 11532968 gctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgc 11533027 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| | || | || || || |||||||| |||||||||||||||||||||||||| Sbjct: 11533028 ccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgc 11533084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 13013217 cggcgccggcgccgccggca 13013236
>gb|L22850.1|HNNH7P Helianthus annuus homeodomain containing protein (HAHB-7) mRNA, partial cds Length = 240 Score = 93.7 bits (47), Expect = 5e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 277 tactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggtccacctg 336 |||||||||||||| | | |||||||| || || |||| ||| |||||||| ||| || Sbjct: 82 tactacgacgagcaattgacagagaagaaacggcgtctcagccctgagcaggtacacatg 141 Query: 337 ctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| ||| || ||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 142 ctggagatgagttttgaggaggagaacaagctggagccagagaggaagaccgagctggc 200
>ref|XM_467056.1| Oryza sativa (japonica cultivar-group), mRNA Length = 918 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct: 365 gaaggcggagctggcgcgggagctcgggctgcagccgcgccaggtggccatctggttcca 424 Query: 441 gaac 444 |||| Sbjct: 425 gaac 428
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0048B08 Length = 146874 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct: 59003 gaaggcggagctggcgcgggagctcgggctgcagccgcgccaggtggccatctggttcca 59062 Query: 441 gaac 444 |||| Sbjct: 59063 gaac 59066
>dbj|AK063685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F01, full insert sequence Length = 918 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct: 365 gaaggcggagctggcgcgggagctcgggctgcagccgcgccaggtggccatctggttcca 424 Query: 441 gaac 444 |||| Sbjct: 425 gaac 428
>ref|NM_187673.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 226 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 276
>gb|BT014213.1| Lycopersicon esculentum clone 133390F, mRNA sequence Length = 1472 Score = 85.7 bits (43), Expect = 1e-13 Identities = 145/179 (81%) Strand = Plus / Plus Query: 271 gaggagtactacgacgagcagctcccggagaagaagcgacgcctcaccccggagcaggtc 330 ||||| ||||||||||||||| |||||||||||||| || ||||| || |||||||| Sbjct: 625 gaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtg 684 Query: 331 cacctgctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggag 390 ||| || |||||| |||||| ||| || |||||||||||||| || | || || || Sbjct: 685 cacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccag 744 Query: 391 ctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccg 449 |||||| ||||| ||||||||||| | |||||||| || |||||||| |||||||| Sbjct: 745 ctggcctaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccg 803
>gb|AY554032.1| Oryza sativa (japonica cultivar-group) clone R10191 Hox13 (hox13) mRNA, partial cds Length = 419 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 154 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 204
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_B06 Length = 106678 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 390 gctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccg 449 |||||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 20 gctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccg 79 Query: 450 cgc 452 ||| Sbjct: 80 cgc 82
>dbj|AK105644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F05, full insert sequence Length = 1573 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 605 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 655
>dbj|AK101601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051J21, full insert sequence Length = 1534 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 606 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 656
>dbj|AK101522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046N04, full insert sequence Length = 1577 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 602 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 652
>dbj|AK060119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F01, full insert sequence Length = 1214 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 284 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 334
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 403 ctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 76362 ctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcc 76412
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 75.8 bits (38), Expect = 1e-10 Identities = 100/120 (83%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 336 gctggagaggagcttcgaggaggagaac---aagctggagccggaaaggaagacggagct 392 ||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||| Sbjct: 36828 gctggagcggagcttcgaggaggagaagcggaagctggagccggagcggaagagcgagct 36769 Query: 393 ggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 ||| || |||||| | |||||| ||||||||||| |||||||||||||||||||| Sbjct: 36768 ggcgcggcgtctcgggatcgcgccgcggcaggtggccgtgtggttccagaaccgccgcgc 36709
>ref|XM_473365.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 690 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| ||| |||| || ||||||||||| ||||||||| |||||||||| Sbjct: 159 gaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttcca 218 Query: 441 gaac 444 |||| Sbjct: 219 gaac 222
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| ||| |||| || ||||||||||| ||||||||| |||||||||| Sbjct: 40542 gaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttcca 40601 Query: 441 gaac 444 |||| Sbjct: 40602 gaac 40605
>gb|AY224440.1| Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds Length = 837 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| ||| |||| || ||||||||||| ||||||||| |||||||||| Sbjct: 306 gaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttcca 365 Query: 441 gaac 444 |||| Sbjct: 366 gaac 369
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| ||| |||| || ||||||||||| ||||||||| |||||||||| Sbjct: 27097899 gaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttcca 27097958 Query: 441 gaac 444 |||| Sbjct: 27097959 gaac 27097962 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 136 cagatgctcttcatggactgcggcgcc 162 ||||||||||||||||||| ||||||| Sbjct: 30192692 cagatgctcttcatggactccggcgcc 30192666 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 atgctcttcatggactgcggcgcc 162 |||||||||||||||| ||||||| Sbjct: 30199057 atgctcttcatggactccggcgcc 30199034
>dbj|AK109177.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H12, full insert sequence Length = 908 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 381 gaagacggagctggcccgcaagctcgggctgcagccgcgccaggtggccgtctggttcca 440 |||| |||||||||| ||| |||| || ||||||||||| ||||||||| |||||||||| Sbjct: 69 gaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttcca 128 Query: 441 gaac 444 |||| Sbjct: 129 gaac 132
>ref|NM_196163.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine zipper protein (OSJNBa0095C06.14), mRNA Length = 888 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| ||| ||||||||||| ||||| ||||| | | | || Sbjct: 198 gctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgc 257 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| | || | || || || |||||||| |||||||||||||||||||||||||| Sbjct: 258 ccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgc 314
>ref|XM_478887.1| Oryza sativa (japonica cultivar-group), mRNA Length = 723 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||||||||||||| Sbjct: 304 caggtggccgtctggttccagaaccgccgcgcc 336
>gb|AY559047.1| Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds Length = 1173 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||||||||||||| Sbjct: 509 caggtggccgtctggttccagaaccgccgcgcc 541
>gb|AY346329.1| Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds Length = 1272 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| ||| ||||||||||| ||||| ||||| | | | || Sbjct: 390 gctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgc 449 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| | || | || || || |||||||| |||||||||||||||||||||||||| Sbjct: 450 ccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgc 506
>gb|AF443621.1| Craterostigma plantagineum homeodomain leucine zipper protein CPHB-5 (CPHB-5) mRNA, complete cds Length = 1401 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 298 gagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcgaggag 357 ||||||||||| || |||||| | |||||||| ||| |||| |||| ||||||||||| Sbjct: 574 gagaagaagcgccgactcaccgccgagcaggttcacttgcttgagaagagcttcgaggct 633 Query: 358 gagaacaagctggagcc 374 ||||||||||| ||||| Sbjct: 634 gagaacaagcttgagcc 650
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||| |||||||||||| ||| ||||||||||| ||||| ||||| | | | || Sbjct: 110521 gctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgc 110580 Query: 396 ccgcaagctcgggctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| | || | || || || |||||||| |||||||||||||||||||||||||| Sbjct: 110581 ccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgc 110637
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 360 gaacaagctggagccggaaaggaagacggagctggcccgcaagctcgggctgcagccgcg 419 |||||||||||||||||| ||||| | ||||||| || || || ||||||||||| Sbjct: 20013 gaacaagctggagccggagcggaagctgcagctggcgcgtgcccttggcctgcagccgcg 20072 Query: 420 ccaggtggccgtctggttccagaaccgccgcgc 452 ||||||||| |||||||||||||||| ||||| Sbjct: 20073 gcaggtggccatctggttccagaaccggcgcgc 20105
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||||||||||||| Sbjct: 23506568 caggtggccgtctggttccagaaccgccgcgcc 23506600 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcggcgccggcgccgccggc 174 |||||||||||||||||||| Sbjct: 26167522 gcggcgccggcgccgccggc 26167503
>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1301_C12 Length = 128396 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||||||||||||| Sbjct: 66961 caggtggccgtctggttccagaaccgccgcgcc 66993
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||||||||||||| Sbjct: 126465 caggtggccgtctggttccagaaccgccgcgcc 126497
>dbj|AK121889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105B17, full insert sequence Length = 1130 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||||||||||||| Sbjct: 502 caggtggccgtctggttccagaaccgccgcgcc 534
>gb|AF402606.1|AF402606 Phaseolus vulgaris homeodomain leucine zipper protein HDZ3 mRNA, partial cds Length = 966 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 295 ccggagaagaagcgacgcctcaccccggagcaggtccacctgctggagaggagcttcgag 354 ||||||||||||| ||||||| | || |||||||| ||| |||||| |||||| ||| Sbjct: 10 ccggagaagaagcatcgcctcagttctgaacaggtccatctgttggagaagagctttgag 69 Query: 355 gaggagaacaagctggagccggaaaggaagac 386 || |||||||| |||||||| || |||||||| Sbjct: 70 gaagagaacaaactggagcctgagaggaagac 101
>gb|AY554034.1| Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds Length = 1002 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||||||||||||| Sbjct: 257 caggtcgccgtctggttccagaaccgccgcgcc 289
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||||||||||||| Sbjct: 19869 caggtcgccgtctggttccagaaccgccgcgcc 19901
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||||||||||||| Sbjct: 106682 caggtcgccgtctggttccagaaccgccgcgcc 106714
>dbj|AK073446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043C24, full insert sequence Length = 1170 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccgcgcc 453 ||||| ||||||||||||||||||||||||||| Sbjct: 513 caggtcgccgtctggttccagaaccgccgcgcc 545
>gb|AY554038.1| Oryza sativa (japonica cultivar-group) Hox11 (hox11) gene, exons 2, 3 and partial cds Length = 307 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 |||||||||||||| || ||||||||||||||||||||| Sbjct: 211 gccgcgccaggtggaggtgtggttccagaaccgccgcgcc 250
>gb|AY559046.1| Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 11 (hox11) mRNA, partial cds Length = 272 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 |||||||||||||| || ||||||||||||||||||||| Sbjct: 104 gccgcgccaggtggaggtgtggttccagaaccgccgcgcc 143
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 401 agctcgggctgcagccgcgccaggtggccgtctggttccagaac 444 ||||||| |||||||| |||||||| ||| |||||||||||||| Sbjct: 149986 agctcggcctgcagcctcgccaggtcgccatctggttccagaac 150029
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1596_C06 Length = 124721 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 414 gccgcgccaggtggccgtctggttccagaaccgccgcgcc 453 |||||||||||||| || ||||||||||||||||||||| Sbjct: 28866 gccgcgccaggtggaggtgtggttccagaaccgccgcgcc 28827
>gb|AF145730.1|AF145730 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA, partial cds Length = 1057 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 401 agctcgggctgcagccgcgccaggtggccgtctggttccagaac 444 ||||||| |||||||| |||||||| ||| |||||||||||||| Sbjct: 256 agctcggcctgcagcctcgccaggtcgccatctggttccagaac 299
>dbj|AK103160.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121C04, full insert sequence Length = 1182 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 401 agctcgggctgcagccgcgccaggtggccgtctggttccagaac 444 ||||||| |||||||| |||||||| ||| |||||||||||||| Sbjct: 261 agctcggcctgcagcctcgccaggtcgccatctggttccagaac 304
>dbj|AK059755.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C03, full insert sequence Length = 1151 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 401 agctcgggctgcagccgcgccaggtggccgtctggttccagaac 444 ||||||| |||||||| |||||||| ||| |||||||||||||| Sbjct: 217 agctcggcctgcagcctcgccaggtcgccatctggttccagaac 260
>emb|AJ004903.1|GGJ004903 Gallus gallus mRNA for CMIX homeobox gene, partial cds Length = 409 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||||||||||||||||||| Sbjct: 147 gtctggttccagaaccgccgcgcc 170
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 409 ctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| |||||| ||||||| || |||||||||||||||||||| Sbjct: 2123161 ctgcggccgcggcaggtggaggtgtggttccagaaccgccgcgc 2123204 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 27820366 cggcgccggcgccgccggcat 27820386 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 406 gggctgcagccgcgccaggtggccgtctggttccagaaccg 446 ||||||| |||||| ||||||| || |||||||||||||| Sbjct: 2137192 gggctgcggccgcggcaggtggaggtgtggttccagaaccg 2137232
>ref|NM_204990.1| Gallus gallus CMIX homeobox gene (CMIX), mRNA Length = 886 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||||||||||||||||||| Sbjct: 311 gtctggttccagaaccgccgcgcc 334
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 409 ctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| |||||| ||||||| || |||||||||||||||||||| Sbjct: 144023 ctgcggccgcggcaggtggaggtgtggttccagaaccgccgcgc 144066 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 406 gggctgcagccgcgccaggtggccgtctggttccagaaccg 446 ||||||| |||||| ||||||| || |||||||||||||| Sbjct: 158054 gggctgcggccgcggcaggtggaggtgtggttccagaaccg 158094
>ref|XM_550827.1| Anopheles gambiae str. PEST ENSANGP00000027105 (ENSANGG00000023474), partial mRNA Length = 498 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 388 gagctggcccgcaagctcgggctgcagc 415 |||||||||||| ||||||||||||||| Sbjct: 130 gagctggcccgccagctcgggctgcagc 157
>dbj|AK102692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103D12, full insert sequence Length = 1260 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 409 ctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| |||||| ||||||| || |||||||||||||||||||| Sbjct: 648 ctgcggccgcggcaggtggaggtgtggttccagaaccgccgcgc 691
>dbj|AK059116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E09, full insert sequence Length = 1075 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 409 ctgcagccgcgccaggtggccgtctggttccagaaccgccgcgc 452 |||| |||||| ||||||| || |||||||||||||||||||| Sbjct: 463 ctgcggccgcggcaggtggaggtgtggttccagaaccgccgcgc 506
>gb|U34615.1|GGU34615 Gallus gallus homeobox protein CMIX mRNA, complete cds Length = 886 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||||||||||||||||||| Sbjct: 311 gtctggttccagaaccgccgcgcc 334
>ref|XM_462681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1728 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 136 cagatgctcttcatggactgcggcgcc 162 ||||||||||||||||||| ||||||| Sbjct: 1496 cagatgctcttcatggactccggcgcc 1470
>ref|XM_473736.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1728 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 136 cagatgctcttcatggactgcggcgcc 162 ||||||||||||||||||| ||||||| Sbjct: 1496 cagatgctcttcatggactccggcgcc 1470
>ref|XM_545946.2| PREDICTED: Canis familiaris similar to Homeobox protein MSX-1 (Hox-7) (LOC488828), mRNA Length = 776 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 452 tctggttccagaaccgccgcgcc 474
>emb|X65791.1|GDHOX7GNA G.domseticus Hox-7 cDNA, 3' CDS Length = 861 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 234 tctggttccagaaccgccgcgcc 256
>emb|X61922.1|GGHOX7 G. gallus Hox-7 mRNA Length = 796 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 182 tctggttccagaaccgccgcgcc 204
>emb|X03062.1|DMCAD Drosophila caudal (cad) mRNA fragment with homeo-box-sequence from 38E region on left arm of chromosome 2 Length = 591 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 320 tctggttccagaaccgccgcgcc 342
>ref|NM_134301.3| Drosophila melanogaster caudal CG1759-RB, transcript variant B (cad), mRNA Length = 2227 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 1170 tctggttccagaaccgccgcgcc 1192
>ref|NM_057606.4| Drosophila melanogaster caudal CG1759-RA, transcript variant A (cad), mRNA Length = 2519 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 1329 tctggttccagaaccgccgcgcc 1351
>gb|AY069565.1| Drosophila melanogaster LD29596 full length cDNA Length = 2518 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 1307 tctggttccagaaccgccgcgcc 1329
>gb|DQ067481.1|DQ067480S2 Saguinus oedipus msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1124 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 523 tctggttccagaaccgccgcgcc 545
>gb|DQ067479.1|DQ067478S2 Leontopithecus rosalia msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 930 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 554 tctggttccagaaccgccgcgcc 576
>gb|DQ067477.1|DQ067476S2 Callithrix jacchus msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1097 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 531 tctggttccagaaccgccgcgcc 553
>gb|DQ067475.1|DQ067474S2 Callimico goeldii msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1153 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 551 tctggttccagaaccgccgcgcc 573
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 51896 tctggttccagaaccgccgcgcc 51918
>dbj|D82577.1|AMTMSX1P Ambystoma mexicanum mRNA for Msx1 protein, complete cds Length = 1601 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 581 tctggttccagaaccgccgcgcc 603
>dbj|AK105711.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E10, full insert sequence Length = 1914 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 136 cagatgctcttcatggactgcggcgcc 162 ||||||||||||||||||| ||||||| Sbjct: 309 cagatgctcttcatggactccggcgcc 335
>dbj|AK070216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045E19, full insert sequence Length = 2944 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 136 cagatgctcttcatggactgcggcgcc 162 ||||||||||||||||||| ||||||| Sbjct: 2420 cagatgctcttcatggactccggcgcc 2394
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 41710 tctggttccagaaccgccgcgcc 41732
>ref|NM_205488.1| Gallus gallus msh homeobox homolog 1 (Drosophila) (MSX1), mRNA Length = 1310 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 698 tctggttccagaaccgccgcgcc 720
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 136 cagatgctcttcatggactgcggcgcc 162 ||||||||||||||||||| ||||||| Sbjct: 88983 cagatgctcttcatggactccggcgcc 88957 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 atgctcttcatggactgcggcgcc 162 |||||||||||||||| ||||||| Sbjct: 95348 atgctcttcatggactccggcgcc 95325
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 37641 tctggttccagaaccgccgcgcc 37619
>gb|AY525844.1| Ambystoma mexicanum Msx1 protein (msx1) mRNA, complete cds Length = 920 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 679 tctggttccagaaccgccgcgcc 701
>gb|M76985.1|CHKHBOX7A Chicken homeobox (Hbox 7) mRNA, complete cds Length = 1259 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 679 tctggttccagaaccgccgcgcc 701
>gb|M21070.1|DROCADA2 D.melanogaster caudal gene (cad) encoding a maternal and zygotic transcript, exon 2 Length = 1430 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 209 tctggttccagaaccgccgcgcc 231
>dbj|D10372.1|CHKHOX7 Gallus gallus mRNA for Chox-7 protein, complete cds Length = 1310 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgcc 453 ||||||||||||||||||||||| Sbjct: 698 tctggttccagaaccgccgcgcc 720
>dbj|D26573.1|DARKUROA Carrot mRNA for DNA-binding protein (transcriptional regulator), complete cds, CHB1 Length = 1599 Score = 46.1 bits (23), Expect = 0.099 Identities = 41/47 (87%) Strand = Plus / Plus Query: 337 ctggagaggagcttcgaggaggagaacaagctggagccggaaaggaa 383 ||||||| |||||| |||| |||||||||||| ||||| || ||||| Sbjct: 630 ctggagaagagctttgaggtggagaacaagcttgagcctgacaggaa 676
>gb|AY452738.1| Danio rerio Hoxc13b (hoxc13b) mRNA, complete cds Length = 1136 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 417 gcgccaggtggccgtctggttccagaaccg 446 |||||||||| || |||||||||||||||| Sbjct: 742 gcgccaggtgaccatctggttccagaaccg 771
>ref|NM_131546.1| Danio rerio homeo box C13b (hoxc13b), mRNA Length = 1136 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 417 gcgccaggtggccgtctggttccagaaccg 446 |||||||||| || |||||||||||||||| Sbjct: 742 gcgccaggtgaccatctggttccagaaccg 771
>emb|X16159.1|GDCHOX7 Chicken DNA for CHox 7 homeo box gene Length = 374 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgc 452 |||||||||||||||||||||| Sbjct: 210 tctggttccagaaccgccgcgc 231
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 cggcgccggcgccgccggcatg 177 |||||||||||||||||||||| Sbjct: 10413 cggcgccggcgccgccggcatg 10392
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 cggcgccggcgccgccggcatg 177 |||||||||||||||||||||| Sbjct: 267193 cggcgccggcgccgccggcatg 267172 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 tgcggcgccggcgccgccggca 175 |||||||||||||||||||||| Sbjct: 124287 tgcggcgccggcgccgccggca 124308
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 cggcgccggcgccgccggcatg 177 |||||||||||||||||||||| Sbjct: 135531 cggcgccggcgccgccggcatg 135510
>ref|XM_626740.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_1680), partial mRNA Length = 630 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 aacttcttgaagcttttttccc 83 |||||||||||||||||||||| Sbjct: 394 aacttcttgaagcttttttccc 373
>ref|NM_204659.1| Gallus gallus transcription factor Gbx-1 (GBX-1), mRNA Length = 1109 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgc 452 |||||||||||||||||||||| Sbjct: 651 tctggttccagaaccgccgcgc 672
>gb|AF071262.1|AF071262 Danio rerio homeobox protein (hoxc13b) gene, partial cds Length = 222 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 417 gcgccaggtggccgtctggttccagaaccg 446 |||||||||| || |||||||||||||||| Sbjct: 126 gcgccaggtgaccatctggttccagaaccg 155
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcatg 177 |||||||||||||||||||||| Sbjct: 2267138 cggcgccggcgccgccggcatg 2267159
>dbj|AB050015.1| Gallus gallus Gbx-1 mRNA for transcription factor Gbx-1, complete cds Length = 1109 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcgc 452 |||||||||||||||||||||| Sbjct: 651 tctggttccagaaccgccgcgc 672
>ref|NM_126068.1| Arabidopsis thaliana HB53; DNA binding / transcription factor AT5G66700 (HB53) mRNA, complete cds Length = 687 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccg 449 |||||||| || ||||||||||||||||| Sbjct: 331 caggtggctgtttggttccagaaccgccg 359
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 1135385 cggcgccggcgccgccggcat 1135405
>ref|XM_526562.1| PREDICTED: Pan troglodytes similar to Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) (LOC471180), mRNA Length = 1182 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 889 tggttccagaaccgccgcgcc 909
>ref|XM_517087.1| PREDICTED: Pan troglodytes similar to MSX1 protein (LOC461092), mRNA Length = 1905 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 1624 tggttccagaaccgccgcgcc 1644
>ref|NM_189474.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1587 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gcggcgccggcgccgccggca 175 ||||||||||||||||||||| Sbjct: 223 gcggcgccggcgccgccggca 203
>ref|XM_525781.1| PREDICTED: Pan troglodytes similar to Ventral anterior homeobox 2 (LOC470400), mRNA Length = 1887 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 1456 gtctggttccagaaccgccgc 1476
>ref|XM_428966.1| PREDICTED: Gallus gallus similar to TRANSCRIPTION FACTOR LBX1 (LOC431414), partial mRNA Length = 421 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 ctggttccagaaccgccgcgc 452 ||||||||||||||||||||| Sbjct: 349 ctggttccagaaccgccgcgc 369
>ref|XM_427550.1| PREDICTED: Gallus gallus similar to homeobox protein GSH-2 (LOC429994), partial mRNA Length = 341 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgcg 451 ||||||||||||||||||||| Sbjct: 169 tctggttccagaaccgccgcg 189
>ref|XM_589627.2| PREDICTED: Bos taurus similar to Ventral anterior homeobox 2 (LOC539808), mRNA Length = 861 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 433 gtctggttccagaaccgccgc 453
>gb|BC060695.1| Mus musculus jumonji, AT rich interactive domain 2, mRNA (cDNA clone MGC:66908 IMAGE:6406875), complete cds Length = 4939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3048 gaggaggagaacaagctggag 3068
>gb|BC052444.1| Mus musculus jumonji, AT rich interactive domain 2, mRNA (cDNA clone MGC:63443 IMAGE:6406875), complete cds Length = 4939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3048 gaggaggagaacaagctggag 3068
>gb|BC017199.2| Homo sapiens paired-like homeobox 2b, mRNA (cDNA clone MGC:1678 IMAGE:3161284), complete cds Length = 1497 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 529 tggttccagaaccgccgcgcc 549
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 ggcgccggcgccgccggcatg 177 ||||||||||||||||||||| Sbjct: 1603117 ggcgccggcgccgccggcatg 1603097 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ggcgccggcgccgccggcat 176 |||||||||||||||||||| Sbjct: 2986697 ggcgccggcgccgccggcat 2986716
>ref|NM_002448.2| Homo sapiens msh homeobox homolog 1 (Drosophila) (MSX1), mRNA Length = 1944 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 883 tggttccagaaccgccgcgcc 903
>ref|NM_012476.1| Homo sapiens ventral anterior homeobox 2 (VAX2), mRNA Length = 1164 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 474 gtctggttccagaaccgccgc 494
>gb|BC050129.1| Mus musculus jumonji, AT rich interactive domain 2, mRNA (cDNA clone IMAGE:30024329), partial cds Length = 5041 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3379 gaggaggagaacaagctggag 3399
>gb|BC051010.1| Mus musculus jumonji, AT rich interactive domain 2, mRNA (cDNA clone IMAGE:6467926), with apparent retained intron Length = 8373 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 5819 gaggaggagaacaagctggag 5839
>gb|BC026056.1| Mus musculus jumonji, AT rich interactive domain 2, mRNA (cDNA clone IMAGE:4189039), containing frame-shift errors Length = 4576 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3365 gaggaggagaacaagctggag 3385
>gb|BC003374.1| Mus musculus jumonji, AT rich interactive domain 2, mRNA (cDNA clone IMAGE:3589616), partial cds Length = 2238 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 1027 gaggaggagaacaagctggag 1047
>ref|XM_847747.1| PREDICTED: Canis familiaris similar to Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) (LOC610284), mRNA Length = 945 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 433 tggttccagaaccgccgcgcc 453
>ref|NM_003924.2| Homo sapiens paired-like homeobox 2b (PHOX2B), mRNA Length = 3029 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 793 tggttccagaaccgccgcgcc 813
>gb|BC115758.1| Mus musculus RIKEN cDNA D230044M03 gene, mRNA (cDNA clone IMAGE:40056280), partial cds Length = 2742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 2062 gaggaggagaacaagctggag 2082
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 184459 cggcgccggcgccgccggcat 184479
>gb|AF426432.1| Homo sapiens muscle segment homeobox 1 (MSX1) gene, complete cds Length = 5173 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 3432 tggttccagaaccgccgcgcc 3452
>ref|XM_968375.1| PREDICTED: Tribolium castaneum similar to Retinal homeobox protein Rx (DRx1) (DRx) (LOC662264), mRNA Length = 837 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 469 tggttccagaaccgccgcgcc 489
>emb|Y17791.1|HSP17791 Homo sapiens mRNA for homeobox protein VAX2 Length = 1164 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 474 gtctggttccagaaccgccgc 494
>ref|XM_777884.1| PREDICTED: Strongylocentrotus purpuratus similar to CG1650-PA (LOC577669), mRNA Length = 1419 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 1096 tggttccagaaccgccgcgcc 1116
>gb|AC159210.2| Mus musculus BAC clone RP23-54F9 from chromosome 13, complete sequence Length = 228429 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 203295 gaggaggagaacaagctggag 203275
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cccgcaagctcgggctgcagc 415 ||||||||||||||||||||| Sbjct: 151450 cccgcaagctcgggctgcagc 151470
>gb|BT007797.1| Synthetic construct Homo sapiens ventral anterior homeobox 2 mRNA, partial cds Length = 873 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|BT007035.1| Homo sapiens ventral anterior homeobox 2 mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AY683477.1| Arabidopsis thaliana homeodomain protein (HB53) mRNA, complete cds Length = 921 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccg 449 |||||||| || ||||||||||||||||| Sbjct: 417 caggtggctgtttggttccagaaccgccg 445
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 477591 cggcgccggcgccgccggcat 477611 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 caacacgtcgggctccggca 130 |||||||||||||||||||| Sbjct: 2477893 caacacgtcgggctccggca 2477874
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 ccgcgccaggtggccgtctgg 435 ||||||||||||||||||||| Sbjct: 161236 ccgcgccaggtggccgtctgg 161216
>gb|AC092437.4| Homo sapiens BAC clone RP11-326I19 from 4, complete sequence Length = 203583 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 82959 tggttccagaaccgccgcgcc 82979
>gb|AC105389.3| Homo sapiens BAC clone RP11-227F19 from 4, complete sequence Length = 187067 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 103029 tggttccagaaccgccgcgcc 103009
>ref|NM_021878.2| Mus musculus jumonji, AT rich interactive domain 2 (Jarid2), mRNA Length = 4939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3048 gaggaggagaacaagctggag 3068
>dbj|AK147226.1| Mus musculus 15 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:M421020G19 product:jumonji, AT rich interactive domain 2, full insert sequence Length = 5991 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3458 gaggaggagaacaagctggag 3478
>gb|BT024847.1| Arabidopsis thaliana At5g66700 gene, complete cds Length = 687 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccg 449 |||||||| || ||||||||||||||||| Sbjct: 331 caggtggctgtttggttccagaaccgccg 359
>gb|AY633714.1| Gallus gallus ladybird-like homeobox 3 (Lbx3) mRNA, complete cds Length = 1072 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 ctggttccagaaccgccgcgc 452 ||||||||||||||||||||| Sbjct: 715 ctggttccagaaccgccgcgc 735
>dbj|AK164134.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530046H17 product:jumonji, AT rich interactive domain 2, full insert sequence Length = 3128 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 2782 gaggaggagaacaagctggag 2802
>gb|DQ067471.1|DQ067470S2 Macaca mulatta msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 471 tggttccagaaccgccgcgcc 491
>gb|DQ067469.1|DQ067468S2 Pan troglodytes verus msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1429 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 829 tggttccagaaccgccgcgcc 849
>gb|DQ067483.1| Perodicticus potto msh homeobox 1-like protein (MSX1) gene, complete cds Length = 3504 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 2881 tggttccagaaccgccgcgcc 2901
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tgcggcgccggcgccgccggc 174 ||||||||||||||||||||| Sbjct: 118524 tgcggcgccggcgccgccggc 118544
>dbj|AK045214.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130048B16 product:JUMONJI PROTEIN, full insert sequence Length = 4456 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3263 gaggaggagaacaagctggag 3283
>gb|U91514.2|DPU91514 Drosophila picticornis pair-rule transcription factor even-skipped (eve) gene, promoter region and complete cds Length = 5012 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 4263 gtctggttccagaaccgccgc 4283
>gb|AF117979.1|AF117979 Homo sapiens homeodomain transcription factor NBPHOX (PMX2B) gene, complete cds Length = 4885 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 2649 tggttccagaaccgccgcgcc 2669
>gb|AY206864.1| Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds Length = 1519 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 406 gggctgcagccgcgccaggtggccgtctggttccagaaccg 446 ||||||| |||||| ||||||| || |||||||||||||| Sbjct: 640 gggctgcggccgcggcaggtggaggtgtggttccagaaccg 680
>ref|NM_022637.1| Rattus norvegicus ventral anterior homeobox 2 (Vax2), mRNA Length = 879 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2, complete sequence Length = 181671 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 80945 gtctggttccagaaccgccgc 80965
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 169621 cggcgccggcgccgccggcat 169641
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 122875 cggcgccggcgccgccggcat 122895
>gb|AY892396.1| Synthetic construct Homo sapiens clone FLH014960.01L ventral anterior homeobox 2 (VAX2) mRNA, partial cds Length = 873 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AY892395.1| Synthetic construct Homo sapiens clone FLH014959.01L ventral anterior homeobox 2 (VAX2) mRNA, partial cds Length = 873 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AY889916.1| Synthetic construct Homo sapiens clone FLH014963.01X ventral anterior homeobox 2 (VAX2) mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AF145726.1|AF145726 Oryza sativa homeodomain leucine zipper protein (Oshox2) mRNA, partial cds Length = 1272 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 406 gggctgcagccgcgccaggtggccgtctggttccagaaccg 446 ||||||| |||||| ||||||| || |||||||||||||| Sbjct: 385 gggctgcggccgcggcaggtggaggtgtggttccagaaccg 425
>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2 Length = 62927 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 caggtggccgtctggttccagaaccgccg 449 |||||||| || ||||||||||||||||| Sbjct: 40141 caggtggctgtttggttccagaaccgccg 40169
>gb|AF113516.1|AF113516 Rattus norvegicus ventral anterior homeobox 2 (Vax2) mRNA, complete cds Length = 879 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>dbj|AK105150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D07, full insert sequence Length = 1391 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 406 gggctgcagccgcgccaggtggccgtctggttccagaaccg 446 ||||||| |||||| ||||||| || |||||||||||||| Sbjct: 500 gggctgcggccgcggcaggtggaggtgtggttccagaaccg 540
>ref|NM_211417.1| Eremothecium gossypii AGL312Wp (AGL312W), mRNA Length = 1752 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tgcggcgccggcgccgccggc 174 ||||||||||||||||||||| Sbjct: 960 tgcggcgccggcgccgccggc 980
>gb|BC006336.2| Homo sapiens ventral anterior homeobox 2, mRNA (cDNA clone MGC:12577 IMAGE:4304066), complete cds Length = 1140 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgc 450 ||||||||||||||||||||| Sbjct: 449 gtctggttccagaaccgccgc 469
>gb|AY104494.1| Zea mays PCO133236 mRNA sequence Length = 1077 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 cggcgccggcgccgccggcat 176 ||||||||||||||||||||| Sbjct: 233 cggcgccggcgccgccggcat 213
>dbj|D31967.1|MUSTGPO Mus musculus mRNA for jumonji protein, complete cds Length = 4071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 3067 gaggaggagaacaagctggag 3087
>gb|BC067353.1| Homo sapiens msh homeobox homolog 1 (Drosophila), mRNA (cDNA clone MGC:78580 IMAGE:4893288), complete cds Length = 1345 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 650 tggttccagaaccgccgcgcc 670
>gb|BC021285.2| Homo sapiens msh homeobox homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:5018103), partial cds Length = 1546 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 857 tggttccagaaccgccgcgcc 877
>gb|AC166074.3| Mus musculus BAC clone RP23-152H18 from chromosome 13, complete sequence Length = 224712 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctggag 372 ||||||||||||||||||||| Sbjct: 190481 gaggaggagaacaagctggag 190501
>gb|M76732.1|HUMHOX702 Human HOX7 gene, exon 2 and complete cds Length = 2533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 801 tggttccagaaccgccgcgcc 821
>gb|M97676.1|HUMHOX7 Homo sapiens (region 7) homeobox protein (HOX7) mRNA, complete cds Length = 1713 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 877 tggttccagaaccgccgcgcc 897
>dbj|AB042769.1| Zinnia elegans ZeHB3 mRNA for homeobox-leucine zipper protein, complete cds Length = 1240 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 415 ccgcgccaggtggccgtctggttccagaa 443 ||||||||||||||| | ||||||||||| Sbjct: 560 ccgcgccaggtggccatttggttccagaa 588
>dbj|AB028077.1| Physcomitrella patens mRNA for homeobox protein PpHB6, complete cds Length = 1802 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 336 gctggagaggagcttcgaggaggagaacaagctggagccggaaaggaagacggagctggc 395 ||||||||||| |||||| |||||||||||| ||||| ||| |||| | | ||||||| Sbjct: 569 gctggagaggaatttcgagatggagaacaagctcgagcctgaacggaaaatgcagctggc 628 Query: 396 c 396 | Sbjct: 629 c 629
>dbj|D82344.1| Homo sapiens mRNA for NBPhox, complete cds Length = 3029 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 793 tggttccagaaccgccgcgcc 813
>dbj|AB015671.1| Homo sapiens NBPhox gene, complete cds Length = 5508 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggttccagaaccgccgcgcc 453 ||||||||||||||||||||| Sbjct: 3179 tggttccagaaccgccgcgcc 3199
>gb|AY662674.1| Homo sapiens predicted NUP98/PRRX2 fusion protein mRNA, partial cds Length = 804 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||| ||||||||||||||| Sbjct: 499 gtctggtttcagaaccgccgcgcc 522
>gb|AY308812.1| Canis familiaris homeobox A7 gene, partial sequence Length = 290 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 38 tctggttccagaaccgccgc 57
>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete sequence Length = 218177 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 203600 gtctggttccagaaccgccg 203581
>ref|NM_188071.1| Oryza sativa (japonica cultivar-group), Ozsa8491 predicted mRNA Length = 660 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcggcgccggcgccgccggc 174 |||||||||||||||||||| Sbjct: 605 gcggcgccggcgccgccggc 586
>gb|AC150428.3| Branchiostoma floridae clone CH302-86J11, complete sequence Length = 193518 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 135219 tctggttccagaaccgccgc 135200
>gb|AC150426.3| Branchiostoma floridae clone CH302-83B17, complete sequence Length = 192173 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 66686 tctggttccagaaccgccgc 66667
>ref|XM_482830.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 649 gtctggttccagaaccgccg 668
>ref|XM_480990.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1025 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcggcgccggcgccgccggc 174 |||||||||||||||||||| Sbjct: 540 gcggcgccggcgccgccggc 521
>ref|XM_521638.1| PREDICTED: Pan troglodytes similar to NK6 transcription factor related, locus 2; NK homeobox family 6, B; glial and testis-specific homeobox protein; homeobox 6B (LOC466238), mRNA Length = 831 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 580 gtctggttccagaaccgccg 599
>ref|XM_508090.1| PREDICTED: Pan troglodytes similar to homeodomain protein (LOC450798), mRNA Length = 2142 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 1886 tctggttccagaaccgccgc 1905
>ref|XM_520310.1| PREDICTED: Pan troglodytes similar to Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox protein 2) (LOC464792), mRNA Length = 708 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||| ||||||||||||||| Sbjct: 394 gtctggtttcagaaccgccgcgcc 417
>ref|XM_464849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 351 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 234 cggcgccggcgccgccggca 215
>ref|XM_519011.1| PREDICTED: Pan troglodytes similar to homeobox protein A7; homeobox protein HOX-1A (LOC463310), mRNA Length = 3852 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 1604 tctggttccagaaccgccgc 1623 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 725 tctggttccagaaccgccgc 744
>ref|XM_462682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1782 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 atgctcttcatggactgcggcgcc 162 |||||||||||||||| ||||||| Sbjct: 1547 atgctcttcatggactccggcgcc 1524
>ref|XM_518250.1| PREDICTED: Pan troglodytes similar to jumonji, AT rich interactive domain 2 protein; jumonji homolog (mouse); jumonji (mouse) homolog (LOC462450), mRNA Length = 5391 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctgga 371 |||||||||||||||||||| Sbjct: 4795 gaggaggagaacaagctgga 4814
>ref|NM_196379.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050N08.20), mRNA Length = 357 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 258 cggcgccggcgccgccggca 277
>ref|NM_193096.1| Oryza sativa (japonica cultivar-group), mRNA Length = 648 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gcggcgccggcgccgccggc 174 |||||||||||||||||||| Sbjct: 23 gcggcgccggcgccgccggc 42
>ref|NM_053869.1| Rattus norvegicus paired-like homeobox 2a (Phox2a), mRNA Length = 1608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 602 gtctggttccagaaccgccg 621
>ref|NM_006168.1| Homo sapiens NK6 transcription factor related, locus 1 (Drosophila) (NKX6-1), mRNA Length = 1116 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 850 gtctggttccagaaccgccg 869
>ref|XM_473737.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1782 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 atgctcttcatggactgcggcgcc 162 |||||||||||||||| ||||||| Sbjct: 1547 atgctcttcatggactccggcgcc 1524
>ref|NM_004973.2| Homo sapiens Jumonji, AT rich interactive domain 2 (JARID2), mRNA Length = 5756 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 gaggaggagaacaagctgga 371 |||||||||||||||||||| Sbjct: 3107 gaggaggagaacaagctgga 3126
>ref|NM_014562.2| Homo sapiens orthodenticle homolog 1 (Drosophila) (OTX1), mRNA Length = 2176 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 ||||||||| |||||||||||||| Sbjct: 498 gtctggttcaagaaccgccgcgcc 521
>ref|NM_016307.3| Homo sapiens paired related homeobox 2 (PRRX2), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||| ||||||||||||||| Sbjct: 675 gtctggtttcagaaccgccgcgcc 698
>ref|NM_053651.1| Rattus norvegicus NK2 transcription factor related, locus 5 (Drosophila) (Nkx2-5), mRNA Length = 1342 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 641 tctggttccagaaccgccgc 660
>gb|BT023887.1| Drosophila melanogaster RE44291 full insert cDNA Length = 2351 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 827 gtctggttccagaaccgccg 846
>gb|BC001800.1| Homo sapiens orthopedia homolog (Drosophila), mRNA (cDNA clone MGC:3161 IMAGE:3354882), complete cds Length = 2702 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 ||||||||||||||||| |||||| Sbjct: 596 gtctggttccagaaccgacgcgcc 619
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 104793 cggcgccggcgccgccggca 104812
>ref|XM_616463.2| PREDICTED: Bos taurus similar to suppression of tumorigenicity 18 (LOC536336), partial mRNA Length = 3167 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tcgaggaggagaacaagctg 369 |||||||||||||||||||| Sbjct: 2914 tcgaggaggagaacaagctg 2933
>ref|XM_600319.2| PREDICTED: Bos taurus similar to H6 homeo box 3 (LOC522046), mRNA Length = 1080 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 824 tctggttccagaaccgccgc 843
>ref|XM_415813.1| PREDICTED: Gallus gallus similar to OG9 homeobox gene (LOC417567), mRNA Length = 803 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 268 gtctggttccagaaccgccg 287
>ref|XM_425299.1| PREDICTED: Gallus gallus similar to LIM class homeodomain protein (LOC427724), mRNA Length = 1368 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 844 gtctggttccagaaccgccg 863
>ref|XM_584327.2| PREDICTED: Bos taurus similar to paired-like homeobox 2a (LOC507670), mRNA Length = 1031 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 558 gtctggttccagaaccgccg 577
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cggcgccggcgccgccggca 175 |||||||||||||||||||| Sbjct: 33142 cggcgccggcgccgccggca 33161
>ref|XM_612378.2| PREDICTED: Bos taurus similar to orthodenticle 1 (LOC540628), mRNA Length = 1338 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 ||||||||| |||||||||||||| Sbjct: 520 gtctggttcaagaaccgccgcgcc 543
>gb|BC058852.1| Mus musculus distal-less homeobox 3, mRNA (cDNA clone MGC:60844 IMAGE:30012395), complete cds Length = 2631 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 727 tctggttccagaaccgccgc 746
>gb|AY640310.1| Gallus gallus homeodomain transcription factor DLX3 (DLX3) mRNA, complete cds Length = 1150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 598 tctggttccagaaccgccgc 617
>gb|BC014645.1| Homo sapiens paired related homeobox 2, mRNA (cDNA clone MGC:19843 IMAGE:4553935), complete cds Length = 1327 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 |||||||| ||||||||||||||| Sbjct: 675 gtctggtttcagaaccgccgcgcc 698
>gb|BC007621.1| Homo sapiens orthodenticle homolog 1 (Drosophila), mRNA (cDNA clone MGC:15736 IMAGE:3355563), complete cds Length = 2155 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccgcgcc 453 ||||||||| |||||||||||||| Sbjct: 470 gtctggttcaagaaccgccgcgcc 493
>ref|XM_868176.1| PREDICTED: Bos taurus similar to NK6 transcription factor related, locus 1 (LOC616211), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gtctggttccagaaccgccg 449 |||||||||||||||||||| Sbjct: 1270 gtctggttccagaaccgccg 1289
>ref|XM_867772.1| PREDICTED: Bos taurus similar to homeobox protein A7 (LOC615851), mRNA Length = 666 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 527 tctggttccagaaccgccgc 546
>ref|XM_865011.1| PREDICTED: Bos taurus similar to homeobox protein A6, transcript variant 1 (LOC614264), mRNA Length = 1189 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 931 tctggttccagaaccgccgc 950
>ref|XM_874745.1| PREDICTED: Bos taurus similar to homeobox protein A6, transcript variant 6 (LOC614264), mRNA Length = 685 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 419 tctggttccagaaccgccgc 438
>ref|XM_874660.1| PREDICTED: Bos taurus similar to homeobox protein A6, transcript variant 5 (LOC614264), mRNA Length = 1049 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 949 tctggttccagaaccgccgc 968
>ref|XM_874574.1| PREDICTED: Bos taurus similar to homeobox protein A6, transcript variant 4 (LOC614264), mRNA Length = 1040 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 940 tctggttccagaaccgccgc 959
>ref|XM_874491.1| PREDICTED: Bos taurus similar to homeobox protein A6, transcript variant 3 (LOC614264), mRNA Length = 850 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctggttccagaaccgccgc 450 |||||||||||||||||||| Sbjct: 688 tctggttccagaaccgccgc 707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,727,519 Number of Sequences: 3902068 Number of extensions: 3727519 Number of successful extensions: 102179 Number of sequences better than 10.0: 492 Number of HSP's better than 10.0 without gapping: 501 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 97189 Number of HSP's gapped (non-prelim): 4980 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
