ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60d09 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 123 bits (308), Expect = 3e-28 Identities = 68/111 (61%), Positives = 69/111 (62%) Frame = +3 Query: 129 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 308 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 309 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLRPPGGQGAA 461 KKTLRQGVVVIT ETGKWHVVMACRDFL+ AA Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAA 119
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 122 bits (305), Expect = 6e-28 Identities = 67/111 (60%), Positives = 68/111 (61%) Frame = +3 Query: 129 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 308 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 309 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLRPPGGQGAA 461 KKTLRQGVVVIT ETGKWHVVMACRDFL+ AA Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAA 119
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 57.4 bits (137), Expect = 2e-08 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 12/114 (10%) Frame = +3 Query: 132 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 275 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 276 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 KKTLR+G VVIT ETGKWHV+MACRDFL+ Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLK 123
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 53.1 bits (126), Expect = 3e-07 Identities = 23/43 (53%), Positives = 27/43 (62%) Frame = +3 Query: 309 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 KKTLR+G V+IT ETGKWHV+MACRDFL+ Sbjct: 80 KKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLK 122
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 52.8 bits (125), Expect = 4e-07 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 12/115 (10%) Frame = +3 Query: 129 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 272 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 273 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 KKTLR+G VVIT E+GKWHV+MACRD+L+ Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLK 123
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 52.8 bits (125), Expect = 4e-07 Identities = 23/43 (53%), Positives = 27/43 (62%) Frame = +3 Query: 309 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 KKTLR+G VV+T ETGKWHV+MACRDFL+ Sbjct: 87 KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLK 129
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = +3 Query: 309 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 KKTLR+G VV+T ETGKW+V+MACRDFL+ Sbjct: 83 KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLK 125
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 49.3 bits (116), Expect = 5e-06 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Frame = +3 Query: 165 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 341 A +K A LG+ +K +S+A+R Q KKT+R G +I Sbjct: 33 ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87 Query: 342 TXXXXXXXXXXXXXXXETGKWHVVMACRDFLRPPGGQGAA 461 T E+GKWHV+MACRD+L+ AA Sbjct: 88 TGASSGLGLATAKALAESGKWHVIMACRDYLKTARAARAA 127
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = +3 Query: 309 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 KKT R+G VIT +TGKWHV+MACR+FL+ Sbjct: 84 KKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFLK 126
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/44 (50%), Positives = 23/44 (52%) Frame = +3 Query: 330 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLRPPGGQGAA 461 VVVIT ETGKWHVVMACRDFL+ AA Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAA 44
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 43.1 bits (100), Expect = 3e-04 Identities = 28/96 (29%), Positives = 39/96 (40%) Frame = +3 Query: 150 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 329 G MG VA K A L VS+ A ++++ KKT + Sbjct: 92 GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146 Query: 330 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 +IT +TG+WHV+MACRDFL+ Sbjct: 147 TCIITGASSGLGLATAKALADTGEWHVIMACRDFLK 182
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 37.7 bits (86), Expect = 0.014 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 315 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 437 T ++ +IT TG+WHVVMACRDFL+ Sbjct: 82 TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLK 122
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.79 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -3 Query: 187 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 38 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 328 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 227 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 295 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 158 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 3.0 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 289 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 167 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 316 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 227 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 8.7 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -3 Query: 274 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 95 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 94 ELGLSLASTALQEFNELELECTVLLY 17 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 289 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 167 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,722,539 Number of Sequences: 219361 Number of extensions: 388445 Number of successful extensions: 1442 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1438 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
