>ZN198_HUMAN (Q9UBW7) Zinc finger protein 198 (Zinc finger MYM-type protein 2)|
           (Fused in myeloproliferative disorders protein)
           (Rearranged in atypical myeloproliferative disorder
           protein)
          Length = 1377

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 167 EPGMPAQDACALCTKPLARDSDVFMYKGDTP-FCSEEC 277
           +P  P +  CA C KPL +    +  KG    FCS  C
Sbjct: 322 QPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTC 359

>TRI45_MOUSE (Q6PFY8) Tripartite motif protein 45|
          Length = 580

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +2

Query: 83  RKSPTHTYHTMXXXXXXXXXXXXXXPLGEPGMPAQDA---CALCTKPLARD 226
           R+    TYHTM              P+  P  PA++    C LC +P+ RD
Sbjct: 163 RRQKKTTYHTMVDLKDLKGYSQVGKPILCPSHPAEELRLFCELCDRPVCRD 213

>ZMYM5_HUMAN (Q9UJ78) Zinc finger MYM-type protein 5 (Zinc finger protein 237)|
           (Zinc finger protein 198-like 1)
          Length = 382

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 179 PAQDACALCTKPLARDSDVFMYKGDTP-FCSEEC 277
           PA+  CA C KPL +    +  KG    FCS  C
Sbjct: 239 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTC 272

>PIMT_METKA (Q8TYL4) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)|
           (Protein-beta-aspartate methyltransferase) (PIMT)
           (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
           protein carboxyl methyltransferase)
          Length = 226

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 250 GHALLQRGVPRRADAARRHLRQAGRPEAAAVLVGDG 357
           G  +    +P  AD AR +L++ G      VLVGDG
Sbjct: 108 GRVITVERIPELADFARNNLKKTGYDRFVKVLVGDG 143

>BPHG_BURCE (P37337) Biphenyl dioxygenase system ferredoxin--NAD(+) reductase|
           component (EC 1.18.1.3)
          Length = 408

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 211 AAGARQRRLHVQGGHALLQRGVPRRADAA-RRHLRQAGRPEAAAVLVGDG 357
           A GAR RR+ ++GG      G+    D A  + LRQA +P  + V+VG G
Sbjct: 106 ATGARARRMAIRGGDL---AGIHTLRDLADSQALRQALQPGQSLVIVGGG 152

>ARCC_PSEAE (P13982) Carbamate kinase (EC 2.7.2.2)|
          Length = 310

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 247 GGHALLQRGVPRRADAARRHLRQAGRPEAAAVLVGDGGPARAAGVQEGL 393
           GG+ALL+RG P  AD  R ++R A    A      +   A   G Q GL
Sbjct: 8   GGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGL 56

>GLMU_CORDI (Q6NI74) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 484

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = +1

Query: 220 ARQRRLHVQGGHALLQRGV-------PRRADAARRHLRQAGRPEAAAV 342
           A+Q+ LH  GG +LL   +       P+R  A   H R+  RPE  AV
Sbjct: 23  AKQKTLHSIGGRSLLAHSLHAAAGLSPQRIVAVIGHRREQVRPEVEAV 70

>LEXA2_XANOR (Q5GYM5) LexA repressor 2 (EC 3.4.21.88)|
          Length = 213

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +1

Query: 217 GARQRRLHVQGGHALLQRGVPRRADAARRHLRQAGRPEAAAVLVGDGGPARAAGVQEGLR 396
           G R  + H++   AL Q G  RR     R +R          L G GG  RAA V E +R
Sbjct: 38  GVRAAQYHLE---ALEQAGAIRRVPGQARGIR----------LAGQGGQTRAAAVSEPVR 84

Query: 397 REL 405
            ++
Sbjct: 85  DDV 87

>ZN336_HUMAN (Q9H116) Zinc finger protein 336 (Zinc finger and BTB|
           domain-containing protein 23)
          Length = 711

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +2

Query: 194 CALCTKPLARDSDVF----MYKGDTPFCSEECRDEQMQLDAI 307
           C +C +  A+ + ++    ++ G+ P+C ++C  +  QL+A+
Sbjct: 521 CEVCFRTFAQRNSLYQHIKVHTGERPYCCDQCGKQFTQLNAL 562

>ARCC_RHIET (O31019) Carbamate kinase (EC 2.7.2.2)|
          Length = 310

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 247 GGHALLQRGVPRRADAARRHLRQAGRPEAAAVLVGD 354
           GG+ALL+RG    AD  RR+ R A   +A A L  D
Sbjct: 8   GGNALLRRGEAMTADTQRRNARIAA--QAIAPLAAD 41

>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (ELK2) (Brain-specific eag-like channel 1) (BEC1)
          Length = 1083

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 277 PRRADAARRHLRQAGRPEAAAVLVGDGGPARAAGVQEGLR 396
           PRR  A R  L   GRP  A  L  + GP+      EGLR
Sbjct: 770 PRRT-APRPRLGGRGRPGRAGALKAEAGPSAPPRALEGLR 808

>TF3C1_HUMAN (Q12789) General transcription factor 3C polypeptide 1|
           (Transcription factor IIIC-alpha subunit) (TF3C-alpha)
           (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box
           B-binding subunit)
          Length = 2109

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 250 GHALLQRGVPRRADAARRHLRQAGRPEAAAVLVGDGGPARAAGVQEGLRREL 405
           G  L+   +P  A  A        RPEAA +L+   G AR   VQ  L+R+L
Sbjct: 146 GKKLIIGSLPAHAVQALDSPGGGSRPEAARLLLLHPGTARPVQVQGELQRDL 197

>PIMT_AERPE (Q9YDA1) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)|
           (Protein-beta-aspartate methyltransferase) (PIMT)
           (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
           protein carboxyl methyltransferase)
          Length = 256

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 247 GGHALLQRGVPRRADAARRHLRQAGRPEAAAVLVGDG 357
           GG       +P  A+ AR +L + G      V+VGDG
Sbjct: 129 GGRVYAVERIPELAEYARENLEKTGYRGVVEVVVGDG 165

>Y6451_RHILO (Q989F2) UPF0243 zinc-binding protein msl6451|
          Length = 65

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 194 CALCTKPLARDSDVFMYKGDTPFCSEECRD 283
           C  C KP ARD+         PFCS  C+D
Sbjct: 16  CPECGKPSARDT--------FPFCSARCKD 37

>PROA_XANC8 (Q4UVI0) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 414

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +1

Query: 235 LHVQGGHALLQRGVPRR-------ADAARRHLRQAGRPEAAAVLVGD 354
           L ++ G+ ++ RG           A A +R LR+AG PEAA  LV D
Sbjct: 133 LCIKAGNGVILRGGSEAIHSNTAIARALQRALREAGVPEAALTLVED 179

>UL104_HCMVA (P16735) Protein UL104|
          Length = 697

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 211 AAGARQRRLHVQGGHALLQRGVPRR---ADAARRHLRQAGRPEAAAVLVGDGGPARAAG 378
           A G  +R     GG   L+R  PRR   AD  RR   + GR        G   P RA G
Sbjct: 638 AGGVPERGTASSGGPGTLERSAPRRLITADEERRGPERVGRFRNG----GPDDPRRAGG 692

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +1

Query: 214 AGARQRRLHVQGGHA--LLQRGVPRRADAA---RRHLRQAGRP 327
           A  R++RL  Q  HA    +R  PRR  +    RRHLRQA RP
Sbjct: 152 AHPRRQRLREQPRHAGRPRRRQPPRRGRSRGTHRRHLRQAPRP 194

>IF2_SALCH (Q57JH9) Translation initiation factor IF-2|
          Length = 892

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +1

Query: 241 VQGGHALLQRGVPRRADAAR-----RHLR-QAGRPEA-AAVLVGDGGPARAAGVQEGLRR 399
           V+GG     RG  R A AAR     +H   +A R EA AAV  G GG  + + +Q+G ++
Sbjct: 249 VEGG-----RGRGRNAKAARPAKKGKHAESKADREEARAAVRCGKGGKRKGSSLQQGFQK 303

>DNAK_BACST (Q45551) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 607

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 274 VPRRADAARRHLRQAG-RPEAAAVLVGDGGPARAAGVQEGLRREL 405
           V R     R+ L+ AG  PE    ++  GG  R   VQE ++REL
Sbjct: 281 VERTMGPVRQALQDAGLTPEDIDKIILVGGSTRIPAVQEAIKREL 325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,779,387
Number of Sequences: 219361
Number of extensions: 409997
Number of successful extensions: 1740
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)