>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
 Frame = +3

Query: 9   PASGPD*LPHR-PA-----GGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRH------PR 152
           P  GP   PH  P+     GG P Q   +G  PP + PPP  +  G H   H       +
Sbjct: 390 PGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQ 449

Query: 153 RSLSTPAGTG 182
              STP G+G
Sbjct: 450 YLGSTPVGSG 459

>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian
           branch point-binding protein mBBP) (BBP)
          Length = 639

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
 Frame = +3

Query: 9   PASGPD*LPHR-PA-----GGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRH------PR 152
           P  GP   PH  P+     GG P Q   +G  PP + PPP  +  G H   H       +
Sbjct: 390 PGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQ 449

Query: 153 RSLSTPAGTG 182
              STP G+G
Sbjct: 450 YLGSTPVGSG 459

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +3

Query: 33  PHRPAGGSPDQPTASGRSPPH-LHPPPAQLI*GIHQWRHPRRSLSTPAGTGPP 188
           P RP   +P     S   PPH  HPPP Q     H   HP     T A   PP
Sbjct: 395 PQRPQHPAPHPQQHSQLQPPHSQHPPPHQ-----HIQHHPNHQHQTLAHQPPP 442

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +3

Query: 33  PHRPAGGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRHPRRSLSTPAGTGPPG 191
           P  PAG  P  P + G +PP   PPP            P      P G  PPG
Sbjct: 441 PPPPAGPPPPGPPSPGPAPPGARPPPG-----------PPPPGPPPPGPAPPG 482



 Score = 28.9 bits (63), Expect = 7.7
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
 Frame = +3

Query: 9   PASGPD*LPHRPAGGSPDQPTASGRSPPHLHPPPAQ--LI*GIHQWRHPRRSLSTPAGTG 182
           P  GP      P G  P  P   G  PP   PPPA             P++    PAG  
Sbjct: 394 PPPGPP-----PPGPPPPGPAPPGARPPPPPPPPADEPQQGPAPSGDKPKKKPPPPAGPP 448

Query: 183 PPG 191
           PPG
Sbjct: 449 PPG 451

>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 15  SGPD*LPHRPAGGSPDQPTASGRSPPHLHPPP 110
           S P  LPHRP GG    P    R+ P   PPP
Sbjct: 35  SRPSPLPHRPRGGG-GGPRGGARASPATQPPP 65

>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155) (SWI3-related
            protein)
          Length = 1104

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 42   PAGGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRHPRRSLSTPAGTGPP 188
            PA  +   PT SG +PP + P P  ++        PR  L+ P G  PP
Sbjct: 1035 PAVAANIHPTGSGPTPPGMPPMPGNIL-------GPRVPLTAPNGMYPP 1076

>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)|
          Length = 520

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 15  SGPD*LPHRPAGGSPDQPTASGRSPPHLHPPP 110
           SGP  LP  P GG+P  PT  G  PP    PP
Sbjct: 356 SGP--LPPVPMGGAPPPPTPRGPPPPGRGGPP 385

>BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO|
           domain-containing protein 1)
          Length = 1012

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +3

Query: 9   PASGP-D*LPHRPAGG--SPDQ---PTASGRSPPHLHPPPAQLI*GIHQWRHP 149
           PAS P   +PH P G   +P Q   P++ GR P    PPP Q    I   RHP
Sbjct: 833 PASPPATQVPHNPGGQQQTPYQQYNPSSLGRIPGPASPPPNQTSFNIGPGRHP 885

>MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 675

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 3   LAPASGPD*LPHRPAGGSPDQPTASGRSPPHLHPP 107
           L PA+ P   P  P+ G   QP A G  P  L PP
Sbjct: 433 LLPATAPSAPPPAPSLGPGSQPAAFGSPPALLQPP 467

>BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 precursor|
          Length = 1584

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 9    PASGPD*LPHR--PAGGSPDQPTASGRSPPHLHPPPAQ 116
            PA  P   P R  P+GG P+ P A    PP   PPP Q
Sbjct: 1389 PARSP---PSRQPPSGGPPEAPPAQPPPPPPPPPPPPQ 1423

>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent|
           helicase brm) (Protein brahma)
          Length = 1638

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
 Frame = +3

Query: 6   APASGPD*LPHRPAGGSP--DQPTASGRSP-PHLHPPPAQLI*GIHQWRHP----RRSLS 164
           +PA+ P   P  P+  +P    P  S  SP PH  P P Q   G     HP         
Sbjct: 5   SPANSPMPPPQAPSPMAPPSQSPAPSPHSPYPHQQPGPLQ---GPPPPGHPGAYGHPMQH 61

Query: 165 TPAGTGPPGWH 197
            P G GPPG H
Sbjct: 62  GPPGQGPPGHH 72

>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
           (Verprolin homology domain-containing protein 1)
          Length = 559

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 30  LPHRPAGGSPDQPTASGRSPPHLHP-PPAQLI*GIHQWRHP 149
           L H P+G  P   TA G   P + P PP+Q+I      RHP
Sbjct: 448 LAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHP 488

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Hyperpolarization-activated
            cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
 Frame = +3

Query: 3    LAPASGPD*LPHRPAGGSPDQPTASGRSPP------HLHPPPAQL-I*GIHQWRHPRRSL 161
            L+ +  P   P + A  SP QP     +P       H  PPPA+       Q   P   L
Sbjct: 904  LSSSDSPLLTPMQSAARSPQQPPPPPGAPAGLGLLEHFLPPPARSPTSSPGQLGQPPGEL 963

Query: 162  STPAGTGPPG 191
            S   G+GPPG
Sbjct: 964  SPGLGSGPPG 973

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = +3

Query: 9    PASGPD*LPHRPAGGSPDQPTASGRSPPHLHPP-----PAQLI*GIHQWRHPRRSLSTPA 173
            P  GP   P   +GG+       G   PH  PP      AQ   G HQ +HP+     P 
Sbjct: 1233 PGQGPG--PGAASGGAGAVGAVGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQH--QHPG 1288

Query: 174  GTGPP 188
              GPP
Sbjct: 1289 LPGPP 1293

>DLX2A_BRARE (P50574) Homeobox protein Dlx2a (DLX-2) (Distal-less homeobox gene|
           2a)
          Length = 270

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 57  PDQPTASGRSPPHLHPPPA 113
           P+Q  ASG SPPH  PP A
Sbjct: 189 PEQHVASGESPPHPSPPLA 207

>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 30  LPHRPAGGSPDQPTASGRSPPHLHP-PPAQLI*GIHQWRHP 149
           L H P+G  P   TA G   P + P PP+Q++      RHP
Sbjct: 448 LAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRHP 488


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,709,106
Number of Sequences: 219361
Number of extensions: 1186650
Number of successful extensions: 4183
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4088
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)