ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470995.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 957 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| ||||| ||| || ||||||||||| ||| Sbjct: 256 ccgtgggagggcgcggtggtgtaccggcgggacgcctcggttcaccacctcgagtacgcc 315 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactc 419 |||||||||||||| |||||||| | ||||||||| ||||| ||||| Sbjct: 316 accaccctggagcgcctcggccttggcgacctctcctcccctcactc 362
>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06, complete sequence Length = 143730 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| ||||| ||| || ||||||||||| ||| Sbjct: 20709 ccgtgggagggcgcggtggtgtaccggcgggacgcctcggttcaccacctcgagtacgcc 20768 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactc 419 |||||||||||||| |||||||| | ||||||||| ||||| ||||| Sbjct: 20769 accaccctggagcgcctcggccttggcgacctctcctcccctcactc 20815
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| ||||| ||| || ||||||||||| ||| Sbjct: 489741 ccgtgggagggcgcggtggtgtaccggcgggacgcctcggttcaccacctcgagtacgcc 489800 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactc 419 |||||||||||||| |||||||| | ||||||||| ||||| ||||| Sbjct: 489801 accaccctggagcgcctcggccttggcgacctctcctcccctcactc 489847 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 6147809 ggagaggaagggagaaagaag 6147789 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 6147728 ggagaggaagggagaaagaag 6147708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 3874419 ggagaggaagggagaaagaag 3874399
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| ||||| ||| || ||||||||||| ||| Sbjct: 128493 ccgtgggagggcgcggtggtgtaccggcgggacgcctcggttcaccacctcgagtacgcc 128552 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactc 419 |||||||||||||| |||||||| | ||||||||| ||||| ||||| Sbjct: 128553 accaccctggagcgcctcggccttggcgacctctcctcccctcactc 128599
>ref|XM_468543.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1052 Score = 97.6 bits (49), Expect = 3e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| |||||| ||| || ||||||||||| ||| Sbjct: 246 ccgtgggagggcgcggtggtgtaccggcgggacgcgtcggttcaccacctcgagtacgcc 305 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactcctgcgcgcgcgcc 432 ||||| |||||||| |||||||| | ||||||||| ||| | ||||| | ||||||||| Sbjct: 306 accacactggagcgcctcggccttggcgacctctcctccactcactctcgggcgcgcgcc 365 Query: 433 g 433 | Sbjct: 366 g 366
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 97.6 bits (49), Expect = 3e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| |||||| ||| || ||||||||||| ||| Sbjct: 35762825 ccgtgggagggcgcggtggtgtaccggcgggacgcgtcggttcaccacctcgagtacgcc 35762766 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactcctgcgcgcgcgcc 432 ||||| |||||||| |||||||| | ||||||||| ||| | ||||| | ||||||||| Sbjct: 35762765 accacactggagcgcctcggccttggcgacctctcctccactcactctcgggcgcgcgcc 35762706 Query: 433 g 433 | Sbjct: 35762705 g 35762705 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 29802102 cctcctcccccgccgcgccgcccccggcgacggcg 29802068 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gcgccccgccggcgacggcg 114 |||||||||||||||||||| Sbjct: 6586887 gcgccccgccggcgacggcg 6586868
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1149_C12 Length = 120743 Score = 97.6 bits (49), Expect = 3e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| |||||| ||| || ||||||||||| ||| Sbjct: 33540 ccgtgggagggcgcggtggtgtaccggcgggacgcgtcggttcaccacctcgagtacgcc 33481 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactcctgcgcgcgcgcc 432 ||||| |||||||| |||||||| | ||||||||| ||| | ||||| | ||||||||| Sbjct: 33480 accacactggagcgcctcggccttggcgacctctcctccactcactctcgggcgcgcgcc 33421 Query: 433 g 433 | Sbjct: 33420 g 33420
>dbj|AK098955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060F18, full insert sequence Length = 1053 Score = 97.6 bits (49), Expect = 3e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| |||||| ||| || ||||||||||| ||| Sbjct: 247 ccgtgggagggcgcggtggtgtaccggcgggacgcgtcggttcaccacctcgagtacgcc 306 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactcctgcgcgcgcgcc 432 ||||| |||||||| |||||||| | ||||||||| ||| | ||||| | ||||||||| Sbjct: 307 accacactggagcgcctcggccttggcgacctctcctccactcactctcgggcgcgcgcc 366 Query: 433 g 433 | Sbjct: 367 g 367
>dbj|AK061847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F03, full insert sequence Length = 1101 Score = 97.6 bits (49), Expect = 3e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 313 ccgtgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgcc 372 ||||||||||| || |||||||||||||| |||||| ||| || ||||||||||| ||| Sbjct: 238 ccgtgggagggcgcggtggtgtaccggcgggacgcgtcggttcaccacctcgagtacgcc 297 Query: 373 accaccctggagcgtctcggcctggccgacctctcgtccccgcactcctgcgcgcgcgcc 432 ||||| |||||||| |||||||| | ||||||||| ||| | ||||| | ||||||||| Sbjct: 298 accacactggagcgcctcggccttggcgacctctcctccactcactctcgggcgcgcgcc 357 Query: 433 g 433 | Sbjct: 358 g 358
>gb|AY107981.1| Zea mays PCO125433 mRNA sequence Length = 465 Score = 61.9 bits (31), Expect = 2e-06 Identities = 98/119 (82%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 316 tgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgccacc 375 |||||||| || || || ||||| |||||||| || | |||||||||||||| |||| | Sbjct: 256 tgggagggagctgtcgtctaccgccgcgacgctgccgtccagcacctcgagtacgccagc 315 Query: 376 accctgg-agcgtctcggcctggccgacctctcgtccccgcactcctgcgcgcgcgccg 433 || |||| |||| |||||||| | |||||||| ||||| ||||| |||||||||||| Sbjct: 316 acgctgggagcgcctcggcctaggggacctctcctcccccgactcccgcgcgcgcgccg 374
>gb|AY111828.1| Zea mays CL19868_1 mRNA sequence Length = 1037 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 316 tgggagggggccgtggtgtaccggcgcgacgcggcggcgcagcacctcgagtatgccacc 375 |||||||| || || || ||||| |||||||| || | |||||||||||||| |||| | Sbjct: 779 tgggagggagctgtcgtctaccgccgcgacgctgccgtccagcacctcgagtacgccagc 720 Query: 376 accctggagcgtctcggcct 395 || |||||||| |||||||| Sbjct: 719 acgctggagcgcctcggcct 700
>ref|XM_506668.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1595_D08.21 mRNA Length = 1473 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 424 ggaggcggagggggacgtggaggagg 449
>ref|XM_450967.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1463 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 428 ggaggcggagggggacgtggaggagg 453
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 17849057 ggaggcggagggggacgtggaggagg 17849082 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 agaggaagggagaaagaagac 24 ||||||||||||||||||||| Sbjct: 6531027 agaggaagggagaaagaagac 6531047
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1595_D08 Length = 116351 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 89701 ggaggcggagggggacgtggaggagg 89726
>gb|AF145728.1|AF145728 Oryza sativa homeodomain leucine zipper protein (Oshox4) mRNA, complete cds Length = 1423 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 394 ggaggcggagggggacgtggaggagg 419
>dbj|AK099710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077J22, full insert sequence Length = 1463 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 428 ggaggcggagggggacgtggaggagg 453
>dbj|AK105484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B05, full insert sequence Length = 1473 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagg 304 |||||||||||||||||||||||||| Sbjct: 424 ggaggcggagggggacgtggaggagg 449
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 335 accggcgcgacgcggcggcgcagcacctc 363 |||||||||||||| |||||||||||||| Sbjct: 1730569 accggcgcgacgcgccggcgcagcacctc 1730597 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 cgcggcggcgcagcacctcga 365 ||||||||||||||||||||| Sbjct: 3313764 cgcggcggcgcagcacctcga 3313784 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 274 gacggggaggcggagggggacgtggagg 301 ||||||||||||| |||||||| ||||| Sbjct: 1784854 gacggggaggcggcgggggacggggagg 1784881
>ref|NM_189653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 73 ccgccccacctcctcccccgccgcgccccgccggc 107 |||||| |||||||| |||||| |||||||||||| Sbjct: 247 ccgcccaacctcctctcccgcctcgccccgccggc 213
>ref|XM_467483.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1230 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 137 cctcctcccccgccgcgccgcccccggcgacggcg 103
>ref|XM_506940.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.18 mRNA Length = 1650 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 263 cctcctcccccgccgcgccgcccccggcgacggcg 229
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 73 ccgccccacctcctcccccgccgcgccccgccggc 107 |||||| |||||||| |||||| |||||||||||| Sbjct: 4807231 ccgcccaacctcctctcccgcctcgccccgccggc 4807197 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 14965832 gagaggaagggagaaagaag 14965813
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 58447 cctcctcccccgccgcgccgcccccggcgacggcg 58413
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 171081 cctcctcccccgccgcgccgcccccggcgacggcg 171047
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 73 ccgccccacctcctcccccgccgcgccccgccggc 107 |||||| |||||||| |||||| |||||||||||| Sbjct: 51880 ccgcccaacctcctctcccgcctcgccccgccggc 51846
>dbj|AK121801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097G14, full insert sequence Length = 1632 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 137 cctcctcccccgccgcgccgcccccggcgacggcg 103
>dbj|AK067050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A12, full insert sequence Length = 1650 Score = 46.1 bits (23), Expect = 0.095 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgcc-ccgccggcgacggcg 114 ||||||||||||||||||| || |||||||||||| Sbjct: 263 cctcctcccccgccgcgccgcccccggcgacggcg 229
>gb|AY363616.1| Malus baccata putative TIR-NBS type R protein 4 (R4) mRNA, complete cds Length = 2243 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 270 cgcggacggggaggcggagggggacg 295 |||||||||||||||||||| ||||| Sbjct: 392 cgcggacggggaggcggaggaggacg 367
>gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome 16, complete sequence Length = 178958 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 6 aggaagggagaaagaagacgagaaga 31 |||||||||||||||||| ||||||| Sbjct: 24121 aggaagggagaaagaagaagagaaga 24146
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaagacgagaaga 31 ||||||| |||||||||||||||| ||||| Sbjct: 140986 ggagagggagggagaaagaagacgggaaga 141015
>gb|AC113084.12| Mus musculus chromosome 1, clone RP23-292F19, complete sequence Length = 247962 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cccccgccgcgccccgccggc 107 ||||||||||||||||||||| Sbjct: 82578 cccccgccgcgccccgccggc 82558
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 ccggcgacggcggccaccccg 123 ||||||||||||||||||||| Sbjct: 93609 ccggcgacggcggccaccccg 93629
>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome Length = 152261 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ccgccgcgccccgccggcgac 110 ||||||||||||||||||||| Sbjct: 55557 ccgccgcgccccgccggcgac 55537
>gb|AC117581.8| Mus musculus chromosome 3, clone RP23-105M18, complete sequence Length = 215747 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaagacgagaaga 31 |||||||||||||| |||||| ||||||| Sbjct: 178615 gagaggaagggagagagaagaggagaaga 178587
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 cgcgccccgccggcgacggcg 114 ||||||||||||||||||||| Sbjct: 1528053 cgcgccccgccggcgacggcg 1528073
>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence Length = 220032 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaagacgagaaga 31 ||||| ||||||||||||||| ||||||| Sbjct: 158209 gagagaaagggagaaagaagaagagaaga 158181
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccgccggcgacggcggccacc 120 ||||||||||||||||||||| Sbjct: 263392 ccgccggcgacggcggccacc 263412
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccgccggcgacggcggccacc 120 ||||||||||||||||||||| Sbjct: 267815 ccgccggcgacggcggccacc 267835
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccgccggcgacggcggccacc 120 ||||||||||||||||||||| Sbjct: 228188 ccgccggcgacggcggccacc 228208
>emb|AL662980.3|OSJN00185 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0080E14, complete sequence Length = 148064 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 101400 ggagaggaagggagaaagaag 101380
>gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence Length = 176679 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaaga 23 ||||||||||||||||||||| Sbjct: 133621 gagaggaagggagaaagaaga 133601
>dbj|AB252863.1| Human herpesvirus 1 UL27 gene for virion glycoprotein B, complete cds Length = 2715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccgccgcgccccgccggcgac 110 ||||||||||||||||||||| Sbjct: 238 ccgccgcgccccgccggcgac 258
>gb|AE005952.1| Caulobacter crescentus CB15 section 278 of 359 of the complete genome Length = 13994 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 gcgcgacgcggcggcgcagcacctc 363 |||||| |||||||||||||||||| Sbjct: 13404 gcgcgaagcggcggcgcagcacctc 13380
>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence Length = 185904 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 160381 ggagaggaagggagaaagaag 160401
>gb|AC145069.9| Mus musculus chromosome 3, clone RP23-82B2, complete sequence Length = 134162 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaagacgagaaga 31 |||||||||||||| |||||| ||||||| Sbjct: 41167 gagaggaagggagagagaagaggagaaga 41139
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 gcgcgacgcggcggcgcagca 359 ||||||||||||||||||||| Sbjct: 3631227 gcgcgacgcggcggcgcagca 3631207
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 agaggaagggagaaagaagac 24 ||||||||||||||||||||| Sbjct: 27343820 agaggaagggagaaagaagac 27343800 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 ccggcgacggcggccaccccg 123 ||||||||||||||||||||| Sbjct: 14983822 ccggcgacggcggccaccccg 14983842
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 2657501 ggagaggaagggagaaagaag 2657521 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 279 ggaggcggagggggacgtggaggagggg 306 ||||||||||||||| | |||||||||| Sbjct: 16631569 ggaggcggagggggagggggaggagggg 16631542
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 21864210 ggagaggaagggagaaagaag 21864230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 21855688 ggagaggaagggagaaagaag 21855708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ccgccggcgacggcggccacc 120 ||||||||||||||||||||| Sbjct: 7133900 ccgccggcgacggcggccacc 7133880 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 3480135 gagaggaagggagaaagaag 3480116
>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0610D01 Length = 146418 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 122291 ggagaggaagggagaaagaag 122311 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 113769 ggagaggaagggagaaagaag 113789
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 86695 ggagaggaagggagaaagaag 86715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 78173 ggagaggaagggagaaagaag 78193
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ccgccggcgacggcggccacc 120 ||||||||||||||||||||| Sbjct: 11311 ccgccggcgacggcggccacc 11291
>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1151D08 Length = 152824 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 agaggaagggagaaagaagac 24 ||||||||||||||||||||| Sbjct: 29697 agaggaagggagaaagaagac 29717
>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence Length = 245367 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 273 ggacggggaggcggagggggacgtggagg 301 ||||||||||| ||||||||||| ||||| Sbjct: 115443 ggacggggagggggagggggacggggagg 115471
>dbj|AP006274.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-217F13, chromosome 3, complete sequence Length = 178968 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 gagaggaagggagaaagaaga 23 ||||||||||||||||||||| Sbjct: 109794 gagaggaagggagaaagaaga 109814
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 ggggaggcggagggggacgtg 297 ||||||||||||||||||||| Sbjct: 463971 ggggaggcggagggggacgtg 463991
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 2657452 ggagaggaagggagaaagaag 2657472 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 279 ggaggcggagggggacgtggaggagggg 306 ||||||||||||||| | |||||||||| Sbjct: 16639810 ggaggcggagggggagggggaggagggg 16639783
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 ccggcgacggcggccaccccg 123 ||||||||||||||||||||| Sbjct: 15065517 ccggcgacggcggccaccccg 15065537
>emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0059D20, complete sequence Length = 147108 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 43594 ggagaggaagggagaaagaag 43574 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaag 22 ||||||||||||||||||||| Sbjct: 43513 ggagaggaagggagaaagaag 43493
>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence Length = 200955 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaagacgagaaga 31 ||||| ||||||||||||||| ||||||| Sbjct: 40723 gagagaaagggagaaagaagaagagaaga 40695
>gb|U49121.1|HHU49121 Human herpesvirus 1 strain ANG path, glycoprotein B (gB) gene, complete cds Length = 2715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccgccgcgccccgccggcgac 110 ||||||||||||||||||||| Sbjct: 238 ccgccgcgccccgccggcgac 258
>gb|AC122116.9| Mus musculus chromosome 7, clone RP23-449M8, complete sequence Length = 173990 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 ggacggggaggcggagggggacgtggagg 301 ||||||||||| ||||||||||| ||||| Sbjct: 152464 ggacggggagggggagggggacggggagg 152436 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 ggacggggaggcggagggggacgtggagg 301 ||||||||||| ||||||||||| ||||| Sbjct: 152446 ggacggggagggggagggggacggggagg 152418
>gb|AC101932.9| Mus musculus chromosome 7, clone RP24-66E13, complete sequence Length = 214419 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 ggacggggaggcggagggggacgtggagg 301 ||||||||||| ||||||||||| ||||| Sbjct: 17306 ggacggggagggggagggggacggggagg 17278 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 ggacggggaggcggagggggacgtggagg 301 ||||||||||| ||||||||||| ||||| Sbjct: 17288 ggacggggagggggagggggacggggagg 17260
>gb|M21633.1|HS1GLY1A2 Herpes simplex virus type 1 glycoprotein gene, 5' end Length = 620 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccgccgcgccccgccggcgac 110 ||||||||||||||||||||| Sbjct: 326 ccgccgcgccccgccggcgac 346
>gb|M14164.1|HS1GBICP HSV1 (strain F) gB and ICP18.5 genes encoding glycoprotein B, and a processing and transport protein, complete cds Length = 6098 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccgccgcgccccgccggcgac 110 ||||||||||||||||||||| Sbjct: 3131 ccgccgcgccccgccggcgac 3151
>gb|M21629.1|HS1GLYB Herpes simplex virus type 1 glycoprotein B gene (gB-1), complete cds Length = 9756 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccgccgcgccccgccggcgac 110 ||||||||||||||||||||| Sbjct: 6789 ccgccgcgccccgccggcgac 6809
>gb|AC141630.3| Mus musculus BAC clone RP24-243P7 from chromosome 14, complete sequence Length = 184075 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 273 ggacggggaggcggagggggacgtggaggagg 304 ||||||||||| ||||||||| | |||||||| Sbjct: 21332 ggacggggagggggagggggaggaggaggagg 21363
>ref|XM_524447.1| PREDICTED: Pan troglodytes similar to Nanos homolog 3 (LOC469062), mRNA Length = 1992 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 gccccacctcctcccccgccgcgc 98 |||||||||||| ||||||||||| Sbjct: 461 gccccacctcctgccccgccgcgc 484
>gb|AC161870.4| Mus musculus BAC clone RP24-70M22 from chromosome 14, complete sequence Length = 240578 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 273 ggacggggaggcggagggggacgtggaggagg 304 ||||||||||| ||||||||| | |||||||| Sbjct: 152148 ggacggggagggggagggggaggaggaggagg 152179
>ref|XM_464666.1| Oryza sativa (japonica cultivar-group), mRNA Length = 528 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gcgccccgccggcgacggcg 114 |||||||||||||||||||| Sbjct: 279 gcgccccgccggcgacggcg 298
>ref|XM_518475.1| PREDICTED: Pan troglodytes similar to transcriptional regulating factor 1 isoform 1; transcriptional regulating protein 132; rapa-2; rapa-1 (LOC462695), mRNA Length = 4734 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcaccgttgccgccccctcc 142 |||||||||||||||||||| Sbjct: 2441 gcaccgttgccgccccctcc 2460
>ref|NM_196909.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0071K18.2), mRNA Length = 2196 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagggg 306 ||||||||||||||| | |||||||||| Sbjct: 87 ggaggcggagggggagggggaggagggg 114
>ref|NM_186103.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2007 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcgcgacgcggcggcgcagc 358 |||||||||||||||||||| Sbjct: 531 gcgcgacgcggcggcgcagc 550
>ref|NM_033502.1| Homo sapiens transcriptional regulating factor 1 (TRERF1), transcript variant 1, mRNA Length = 4395 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcaccgttgccgccccctcc 142 |||||||||||||||||||| Sbjct: 2377 gcaccgttgccgccccctcc 2396
>ref|NM_198321.2| Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) (GALNT10), transcript variant 1, mRNA Length = 5222 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 119 ccccgccgcgccccgccggc 100
>gb|BC043100.1| Mus musculus general transcription factor IIIC, polypeptide 2, beta, mRNA (cDNA clone MGC:58020 IMAGE:6406179), complete cds Length = 4861 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 1027 tcttcaccctcgacctggag 1008
>gb|AC114619.9| Mus musculus chromosome 5, clone RP24-86I23, complete sequence Length = 204468 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 155473 tcttcaccctcgacctggag 155454
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gagcgtctcggcctggccga 401 |||||||||||||||||||| Sbjct: 2435181 gagcgtctcggcctggccga 2435162
>gb|AY659049.1| Synthetic construct Peudomonas aeruginosa clone FLH035726.01F PA1686 gene, partial cds Length = 894 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 ccgaggacgacggcggggaaggcgacggcttc 237 |||||| || |||||||||||||| ||||||| Sbjct: 761 ccgaggtcggcggcggggaaggcgtcggcttc 730
>ref|XM_865675.1| PREDICTED: Bos taurus similar to Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4), transcript variant 1 (LOC613955), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 ccgccccacctcctcccccgccgc 96 |||||||||||||||| ||||||| Sbjct: 299 ccgccccacctcctccgccgccgc 322
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cgccggcgacggcggccacc 120 |||||||||||||||||||| Sbjct: 77979 cgccggcgacggcggccacc 77960
>ref|NM_003585.1| Homo sapiens double C2-like domains, beta (DOC2B), mRNA Length = 2030 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cccccgccgcgccccgccgg 106 |||||||||||||||||||| Sbjct: 63 cccccgccgcgccccgccgg 82
>gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, complete sequence Length = 227171 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 102154 ccccgccgcgccccgccggc 102135
>gb|BC050333.1| Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10), mRNA (cDNA clone IMAGE:4838534), with apparent retained intron Length = 4359 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 119 ccccgccgcgccccgccggc 100
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 gggaggcggagggggacgtggagg 301 ||||||||||||| |||||||||| Sbjct: 13131741 gggaggcggagggcgacgtggagg 13131764
>gb|BC003771.1| Mus musculus RIKEN cDNA 2610005M20 gene, mRNA (cDNA clone IMAGE:3487254), containing frame-shift errors Length = 1686 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcccccgccgcgccccgc 103 |||||||||||||||||||| Sbjct: 208 cctcccccgccgcgccccgc 227
>emb|CR974462.5| Mouse DNA sequence from clone RP23-222K15 on chromosome 17, complete sequence Length = 228057 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcccccgccgcgccccgcc 104 |||||||||||||||||||| Sbjct: 125528 ctcccccgccgcgccccgcc 125509
>gb|AC146095.3| Pan troglodytes BAC clone RP43-48M24 from 7, complete sequence Length = 190243 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 agaggaagggagaaagaaga 23 |||||||||||||||||||| Sbjct: 130536 agaggaagggagaaagaaga 130517
>gb|AC121924.3| Mus musculus BAC clone RP24-198P16 from chromosome 2, complete sequence Length = 177062 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 ggggaggcggagggggacgtggaggagg 304 ||||||||||||||||| | |||||||| Sbjct: 164742 ggggaggcggagggggagggggaggagg 164715
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaa 21 |||||||||||||||||||| Sbjct: 145173 ggagaggaagggagaaagaa 145192
>gb|AC122273.4| Mus musculus BAC clone RP23-228B2 from 9, complete sequence Length = 196627 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcccccgccgcgccccgc 103 |||||||||||||||||||| Sbjct: 96416 cctcccccgccgcgccccgc 96435
>gb|AC112268.3| Mus musculus BAC clone RP24-114C23 from 2, complete sequence Length = 167775 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 277 ggggaggcggagggggacgtggaggagg 304 ||||||||||||||||| | |||||||| Sbjct: 167244 ggggaggcggagggggagggggaggagg 167271
>emb|CR753651.10| Human DNA sequence from clone DADB-91F17 on chromosome 6, complete sequence Length = 124464 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 749 cccacctcctcccccgcctctccccgcc 722
>gb|AC006026.2| Homo sapiens BAC clone GS1-96J14 from 7, complete sequence Length = 149869 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ctcctcccccgccgcgcccc 101 |||||||||||||||||||| Sbjct: 38936 ctcctcccccgccgcgcccc 38955
>ref|XM_546283.2| PREDICTED: Canis familiaris similar to GalNAc transferase 10 isoform a (LOC489165), mRNA Length = 2637 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 812 ccccgccgcgccccgccggc 793
>gb|AC073348.8| Homo sapiens BAC clone RP11-786A20 from 7, complete sequence Length = 153997 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 agaggaagggagaaagaaga 23 |||||||||||||||||||| Sbjct: 94357 agaggaagggagaaagaaga 94338
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 gggaggcggagggggacgtggagg 301 ||||||||||||| |||||||||| Sbjct: 94897 gggaggcggagggcgacgtggagg 94874
>gb|AC146114.3| Pan troglodytes BAC clone RP43-22O2 from 7, complete sequence Length = 176328 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 agaggaagggagaaagaaga 23 |||||||||||||||||||| Sbjct: 1250 agaggaagggagaaagaaga 1231
>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence Length = 108051 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 7375 ccccgccgcgccccgccggc 7394
>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 241078 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcccccgccgcgccccgc 103 |||||||||||||||||||| Sbjct: 161092 cctcccccgccgcgccccgc 161111
>emb|BX088523.6| Human DNA sequence from clone DASS-179P20 on chromosome 6, complete sequence Length = 87597 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 39220 cccacctcctcccccgcctctccccgcc 39193
>emb|AL662890.3| Human DNA sequence from clone XXbac-308K3 on chromosome 6 Contains a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) pseudogene, a pseudogene similar to part of nucleolar protein 5A NOL5A, a ribosomal protein L13 (RPL13)(BBC1) pseudogene and two CpG islands, complete sequence Length = 137288 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 14341 cccacctcctcccccgcctctccccgcc 14314
>emb|AL671879.2| Human DNA sequence from clone XXbac-254L4 on chromosome 6 contains a novel SCAN domain and Integrase core domain containing protein (FLJ31087, KIAA1925), a putative novel transcript, a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) pseudogene and two CpG islands, complete sequence Length = 176995 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 170455 cccacctcctcccccgcctctccccgcc 170428
>gb|BC034369.1| Mus musculus general transcription factor IIIC, polypeptide 2, beta, mRNA (cDNA clone MGC:28250 IMAGE:3994677), complete cds Length = 3560 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 817 tcttcaccctcgacctggag 798
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cccgccgcgccccgccggcg 108 |||||||||||||||||||| Sbjct: 2497062 cccgccgcgccccgccggcg 2497043
>emb|AL133258.16| Human DNA sequence from clone RP1-207F6 on chromosome 6 Contains the 3' end of the gene for a novel nucleolar protein NOP56 like protein, ESTs, STSs and GSSs, complete sequence Length = 73666 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 8855 cccacctcctcccccgcctctccccgcc 8828
>emb|AL096814.26|HSDJ139D8 Human DNA sequence from clone RP1-139D8 on chromosome 6p12.1-21.1 Contains genes for GUCA1A (guanylate cyclase activator 1A) and GUCA1B (guanylate cyclase activator 1B) both from retina, the 3' end of the TReP-132 gene for zinc finger transcription regulating protein, the MRPS10 gene for mitochondrial ribosomal protein S10, the 5' end the gene for a novel protein, the gene for a novel protein and two CpG Islands, complete sequence Length = 167078 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcaccgttgccgccccctcc 142 |||||||||||||||||||| Sbjct: 36825 gcaccgttgccgccccctcc 36844
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 ggaggcggagggggacgtggaggagggg 306 ||||||||||||||| | |||||||||| Sbjct: 28673 ggaggcggagggggagggggaggagggg 28700
>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 1/11 Length = 348780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcccccgccgcgccccgcc 104 |||||||||||||||||||| Sbjct: 238790 ctcccccgccgcgccccgcc 238771
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 cggacggggaggcggagggggacg 295 |||||||||||| ||||||||||| Sbjct: 185910 cggacggggaggaggagggggacg 185887
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgcggacggggaggcggagg 289 |||||||||||||||||||| Sbjct: 92369 cgcggacggggaggcggagg 92350
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gtggaggaggggccgtcgccgtgg 318 ||||||| |||||||||||||||| Sbjct: 5653973 gtggaggcggggccgtcgccgtgg 5653950
>gb|AC095029.3| Homo sapiens chromosome 3 clone RP11-208J17, complete sequence Length = 151787 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 agaggaagggagaaagaaga 23 |||||||||||||||||||| Sbjct: 145787 agaggaagggagaaagaaga 145806
>emb|CR753905.3| Human DNA sequence from clone DADB-269D10 on chromosome 6, complete sequence Length = 2302 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 1051 cccacctcctcccccgcctctccccgcc 1024
>dbj|AK127493.1| Homo sapiens cDNA FLJ45586 fis, clone BRTHA3014000, highly similar to Rapa-1 Length = 3864 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcaccgttgccgccccctcc 142 |||||||||||||||||||| Sbjct: 1797 gcaccgttgccgccccctcc 1816
>dbj|AK127135.1| Homo sapiens cDNA FLJ45192 fis, clone BRAWH3049544, weakly similar to Polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.41) Length = 3938 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 88 ccccgccgcgccccgccggc 69
>gb|AC008053.13| Homo sapiens chromosome 17, clone RP5-954K8, complete sequence Length = 110144 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaa 21 |||||||||||||||||||| Sbjct: 73018 ggagaggaagggagaaagaa 73037
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cggcgcgacgcggcggcgca 356 |||||||||||||||||||| Sbjct: 173312 cggcgcgacgcggcggcgca 173293
>gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, complete sequence Length = 175529 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaa 21 |||||||||||||||||||| Sbjct: 21492 ggagaggaagggagaaagaa 21473
>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence Length = 116762 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cccccgccgcgccccgccgg 106 |||||||||||||||||||| Sbjct: 31362 cccccgccgcgccccgccgg 31343
>gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, complete sequence Length = 170282 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 agaggaagggagaaagaaga 23 |||||||||||||||||||| Sbjct: 114271 agaggaagggagaaagaaga 114252
>gb|AC025917.8| Homo sapiens chromosome 15 clone RP11-23N2 map 15q21, complete sequence Length = 149091 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ggagcgtctcggcctggccg 400 |||||||||||||||||||| Sbjct: 4647 ggagcgtctcggcctggccg 4628
>dbj|AK154056.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430030H02 product:similar to general transcription factor IIIC, polypeptide 2 (Beta subunit, 110kD) [Homo sapiens], full insert sequence Length = 1580 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 801 tcttcaccctcgacctggag 782
>dbj|AK138760.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430054O16 product:TFIIIC2 subunit homolog [Mus musculus], full insert sequence Length = 3225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 808 tcttcaccctcgacctggag 789
>dbj|AK149771.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530015L18 product:TFIIIC2 subunit homolog [Mus musculus], full insert sequence Length = 3976 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 936 tcttcaccctcgacctggag 917
>dbj|AK152439.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830072F18 product:TFIIIC2 subunit homolog, full insert sequence Length = 3506 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 804 tcttcaccctcgacctggag 785
>dbj|AK164573.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430005M03 product:hypothetical protein, full insert sequence Length = 1211 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcccccgccgcgccccgc 103 |||||||||||||||||||| Sbjct: 185 cctcccccgccgcgccccgc 204
>dbj|AK151300.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830027N02 product:TFIIIC2 subunit homolog, full insert sequence Length = 3536 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 804 tcttcaccctcgacctggag 785
>gb|AC022915.14| Homo sapiens chromosome 8, clone RP11-770E5, complete sequence Length = 188408 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccactgcccgccccacctcctccc 89 |||||||| ||||||||||||||| Sbjct: 107780 ccactgcctgccccacctcctccc 107803
>dbj|AK159938.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420039E06 product:TFIIIC2 subunit homolog, full insert sequence Length = 4320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 806 tcttcaccctcgacctggag 787
>gb|AF297872.1|AF297872 Homo sapiens zinc finger transcription factor TReP-132 mRNA, complete cds Length = 4395 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcaccgttgccgccccctcc 142 |||||||||||||||||||| Sbjct: 2377 gcaccgttgccgccccctcc 2396
>gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, complete sequence Length = 214530 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 gccccacctcctcccccgccgcgc 98 |||||||||||| ||||||||||| Sbjct: 46923 gccccacctcctgccccgccgcgc 46946
>gb|AC008428.5| Homo sapiens chromosome 5 clone CTC-308D9, complete sequence Length = 148069 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaa 21 |||||||||||||||||||| Sbjct: 31339 ggagaggaagggagaaagaa 31358
>dbj|AK013718.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900057G03 product:retinoid X receptor beta, full insert sequence Length = 939 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcccccgccgcgccccgcc 104 |||||||||||||||||||| Sbjct: 542 ctcccccgccgcgccccgcc 523
>gb|AC018902.8| Homo sapiens chromosome 15 clone RP11-327C2 map 15Q21.2, complete sequence Length = 157226 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ggagcgtctcggcctggccg 400 |||||||||||||||||||| Sbjct: 153229 ggagcgtctcggcctggccg 153210
>dbj|AK088596.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430021B13 product:similar to GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 2 (BETA SUBUNIT, 110KD) [Homo sapiens], full insert sequence Length = 982 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 806 tcttcaccctcgacctggag 787
>dbj|AK035792.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630004J05 product:similar to TFIIIC2 SUBUNIT [Homo sapiens], full insert sequence Length = 2329 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 805 tcttcaccctcgacctggag 786
>dbj|AK046192.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230349E13 product:TFIIIC2 SUBUNIT homolog [Homo sapiens], full insert sequence Length = 3542 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 823 tcttcaccctcgacctggag 804
>dbj|AK087563.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230002J01 product:MEF2-interacting transcription repressor, full insert sequence Length = 3709 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 39 ccccgccgcgccccgccggc 58
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cccgccgcgccccgccggcg 108 |||||||||||||||||||| Sbjct: 3688553 cccgccgcgccccgccggcg 3688572
>dbj|AK083636.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030057F13 product:TFIIIC2 SUBUNIT homolog [Homo sapiens], full insert sequence Length = 3504 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 794 tcttcaccctcgacctggag 775
>dbj|AK083585.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030049L08 product:TFIIIC2 SUBUNIT homolog [Homo sapiens], full insert sequence Length = 3774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 1040 tcttcaccctcgacctggag 1021
>gb|AC135178.13| Homo sapiens chromosome 17, clone RP11-849F2, complete sequence Length = 188340 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaa 21 |||||||||||||||||||| Sbjct: 38501 ggagaggaagggagaaagaa 38482
>dbj|AK004895.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300004C11 product:similar to TFIIIC2 SUBUNIT [Homo sapiens], full insert sequence Length = 3063 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 817 tcttcaccctcgacctggag 798
>dbj|AK043944.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830055J07 product:TFIIIC2 SUBUNIT homolog [Homo sapiens], full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 806 tcttcaccctcgacctggag 787
>dbj|AK011326.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610005M20 product:hypothetical protein, full insert sequence Length = 995 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcccccgccgcgccccgc 103 |||||||||||||||||||| Sbjct: 237 cctcccccgccgcgccccgc 256
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggagggggacgtggaggagg 304 |||||||||||||||||||| Sbjct: 12964063 ggagggggacgtggaggagg 12964044 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 194218 gagaggaagggagaaagaag 194237
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcgcgacgcggcggcgcagc 358 |||||||||||||||||||| Sbjct: 28175521 gcgcgacgcggcggcgcagc 28175540 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 9486604 gagaggaagggagaaagaag 9486585
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 gggaggcggagggggacgtggagg 301 ||||||||||||| |||||||||| Sbjct: 13128516 gggaggcggagggcgacgtggagg 13128539
>emb|BX908720.10| Human DNA sequence from clone DAMA-184I15 on chromosome 6, complete sequence Length = 132528 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cccacctcctcccccgccgcgccccgcc 104 |||||||||||||||||| | ||||||| Sbjct: 1047 cccacctcctcccccgcctctccccgcc 1020
>gb|AC154610.3| Mus musculus BAC clone RP23-335A11 from chromosome 13, complete sequence Length = 201893 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 cctcctcccccgccgcgccccgcc 104 |||||||||||||| ||||||||| Sbjct: 163464 cctcctcccccgccccgccccgcc 163441
>gb|AC154745.3| Mus musculus BAC clone RP24-395F6 from chromosome 13, complete sequence Length = 144172 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 31779 gagaggaagggagaaagaag 31760
>dbj|D21831.2| Mus musculus Rxrb gene for RXR-beta1 isoform, RXR-beta2 isoform, complete cds Length = 5582 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcccccgccgcgccccgcc 104 |||||||||||||||||||| Sbjct: 750 ctcccccgccgcgccccgcc 731
>gb|AC011445.6|AC011445 Homo sapiens chromosome 19 clone CTC-246B18, complete sequence Length = 138538 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 cctctcgtccccgcactcctgcgc 425 ||||||||||||||| |||||||| Sbjct: 28969 cctctcgtccccgcagtcctgcgc 28946
>gb|AE004596.1| Pseudomonas aeruginosa PAO1, section 157 of 529 of the complete genome Length = 11958 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 206 ccgaggacgacggcggggaaggcgacggcttc 237 |||||| || |||||||||||||| ||||||| Sbjct: 255 ccgaggtcggcggcggggaaggcgtcggcttc 286
>ref|NM_027901.2| Mus musculus general transcription factor IIIC, polypeptide 2, beta (Gtf3c2), mRNA Length = 4551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 1039 tcttcaccctcgacctggag 1020
>gb|AC106019.4| Homo sapiens chromosome 17, clone CTD-2540E3, complete sequence Length = 59257 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ggagaggaagggagaaagaa 21 |||||||||||||||||||| Sbjct: 47321 ggagaggaagggagaaagaa 47340
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cgtggtgtaccggcgcgacg 346 |||||||||||||||||||| Sbjct: 4793165 cgtggtgtaccggcgcgacg 4793146 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cgcactcctgcgcgcgcgcc 432 |||||||||||||||||||| Sbjct: 4382556 cgcactcctgcgcgcgcgcc 4382537 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cctcctcccccgccgcgccc 100 |||||||||||||||||||| Sbjct: 4096324 cctcctcccccgccgcgccc 4096343 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 cctcccccgccgcgccccgccggc 107 ||||| |||||||||||||||||| Sbjct: 210191 cctcctccgccgcgccccgccggc 210214
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 90 ccgccgcgccccgccggcgacggcggccaccc 121 ||||||||||| ||||||||||||| ||||| Sbjct: 71740 ccgccgcgcccgcccggcgacggcggtcaccc 71771
>gb|AF240580.1|AF240580 Homo sapiens clone 17ptel_2111ctg_drft sequence Length = 82360 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cccccgccgcgccccgccgg 106 |||||||||||||||||||| Sbjct: 28003 cccccgccgcgccccgccgg 28022
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 96839 gagaggaagggagaaagaag 96820
>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697D09 Length = 158479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 150658 gagaggaagggagaaagaag 150639
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcgcgacgcggcggcgcagc 358 |||||||||||||||||||| Sbjct: 31066 gcgcgacgcggcggcgcagc 31085
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcgcgacgcggcggcgcagc 358 |||||||||||||||||||| Sbjct: 158817 gcgcgacgcggcggcgcagc 158836
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1100H02 Length = 128773 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 68590 gagaggaagggagaaagaag 68571
>gb|AE005072.1| Halobacterium sp. NRC-1 section 103 of 170 of the complete genome Length = 12639 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccccgccggcgacggcgg 115 |||||||||||||||||||| Sbjct: 991 cgccccgccggcgacggcgg 972
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gcgccccgccggcgacggcg 114 |||||||||||||||||||| Sbjct: 21262 gcgccccgccggcgacggcg 21243
>dbj|AK129033.1| Mus musculus mRNA for mKIAA0011 protein Length = 4301 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcaccctcgacctggag 255 |||||||||||||||||||| Sbjct: 789 tcttcaccctcgacctggag 770
>emb|AJ250878.1|STE250878 Streptomyces tendae nikkomycin biosynthetic gene cluster ORFR DNA for nikkomycin regulatory protein Length = 6504 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cgccgcgccccgccggcgacggcg 114 |||||||||||||||||| ||||| Sbjct: 4755 cgccgcgccccgccggcgtcggcg 4732
>emb|AJ330070.1|HSA330070 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WF12R Length = 686 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ctcctcccccgccgcgcccc 101 |||||||||||||||||||| Sbjct: 260 ctcctcccccgccgcgcccc 279
>emb|AJ327325.1|HSA327325 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GI14R Length = 724 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 cctctcgtccccgcactcctgcgc 425 ||||||||||||||| |||||||| Sbjct: 138 cctctcgtccccgcagtcctgcgc 115
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 171371 ccccgccgcgccccgccggc 171352
>gb|AY631852.1| Streptomyces ansochromogenes SanG (sanG) gene, complete cds Length = 5073 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cgccgcgccccgccggcgacggcg 114 |||||||||||||||||| ||||| Sbjct: 3448 cgccgcgccccgccggcgtcggcg 3425
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 171371 ccccgccgcgccccgccggc 171352
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 gcccgccccacctcctcccccgcc 94 |||||||||||||||||| ||||| Sbjct: 871782 gcccgccccacctcctccgccgcc 871759
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ccgctcgcagccgccgtgcg 62 |||||||||||||||||||| Sbjct: 3009457 ccgctcgcagccgccgtgcg 3009476
>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region; Fas-binding protein Daxx (DAXX) gene, partial cds; Bing1 (BING1), tapasin (tapasin), RalGDS-like factor (RLF), KE2 (KE2), BING4 (BING4), beta1, 3-galactosyl transferase (beta1,3-galactosyl transferase), ribosomal protein subunit S18 (RPS18), Sacm21 (Sacm21), H2K1(b) (H2-K1(b)), RING1 (RING1), KE6a (KE6a), KE4 (KE4), RXRbeta (RXRbeta), collagen alpha-2 (XI) (COLA11A2), H2-O alpha (H2-Oalpha), RING3 (RING3), H2-M alpha (H2-M alpha), H2-M beta 2 (H2-M beta2), and H2-M beta1 (H2-M beta1) genes, complete cds; and LMP 2 gene, partial cds Length = 273800 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcccccgccgcgccccgcc 104 |||||||||||||||||||| Sbjct: 119009 ctcccccgccgcgccccgcc 118990
>gb|AF378144.2| Sternopygus macrurus Nav1.4a mRNA, complete cds Length = 7637 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccccctccagctccgtcccctc 156 |||| ||||||||||||||||||| Sbjct: 414 cgccgcctccagctccgtcccctc 391
>gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosome 16, complete sequence Length = 198814 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aggaagggagaaagaagacg 25 |||||||||||||||||||| Sbjct: 118576 aggaagggagaaagaagacg 118557
>emb|AL929249.15| Mouse DNA sequence from clone RP23-273G23 on chromosome 2, complete sequence Length = 194209 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 277 ggggaggcggagggggacgtggaggagg 304 ||||||||||||||||| | |||||||| Sbjct: 63917 ggggaggcggagggggagggggaggagg 63944
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggagggggacgtggaggagg 304 |||||||||||||||||||| Sbjct: 12918337 ggagggggacgtggaggagg 12918318 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 194218 gagaggaagggagaaagaag 194237
>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148110 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggagggggacgtggaggagg 304 |||||||||||||||||||| Sbjct: 103907 ggagggggacgtggaggagg 103926
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 145827 gagaggaagggagaaagaag 145846
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 81038 gagaggaagggagaaagaag 81019
>gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, complete sequence Length = 246636 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 217108 ccccgccgcgccccgccggc 217127
>gb|AC167697.2| Reniera sp. JGI-2005 clone JGIBAYC-5F12, complete sequence Length = 32734 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 2 ggagaggaagggagaaagaagacgagaa 29 ||||||| |||||||||||||| ||||| Sbjct: 11111 ggagagggagggagaaagaagaggagaa 11084
>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete sequence Length = 196737 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gagaggaagggagaaagaag 22 |||||||||||||||||||| Sbjct: 41628 gagaggaagggagaaagaag 41609
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 aaggcgacggcttcttcacc 243 |||||||||||||||||||| Sbjct: 1551540 aaggcgacggcttcttcacc 1551521
>gb|L34006.1|CHKMYOD Chicken (clone CMD1) MyoD gene, promoter and complete cds Length = 7389 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ccccgccgcgccccgccggc 107 |||||||||||||||||||| Sbjct: 4143 ccccgccgcgccccgccggc 4162
>emb|X72017.1|MMRXR M.musculus RXR-beta mRNA Length = 1340 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcccccgccgcgccccgcc 104 |||||||||||||||||||| Sbjct: 750 ctcccccgccgcgccccgcc 731
>emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chromosome 2, complete sequence Length = 196421 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 273 ggacggggaggcggagggggacgtggaggagg 304 ||||||||||| ||||| ||||| |||||||| Sbjct: 19921 ggacggggaggaggaggaggacggggaggagg 19952
>dbj|D70830.1|HUMDOC2B Homo sapiens mRNA for Doc2 beta, complete cds Length = 2043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cccccgccgcgccccgccgg 106 |||||||||||||||||||| Sbjct: 69 cccccgccgcgccccgccgg 88 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,900,194 Number of Sequences: 3902068 Number of extensions: 3900194 Number of successful extensions: 109861 Number of sequences better than 10.0: 194 Number of HSP's better than 10.0 without gapping: 200 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 104565 Number of HSP's gapped (non-prelim): 5302 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
