ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60a12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2969 Score = 176 bits (89), Expect = 2e-41 Identities = 139/155 (89%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 105 gcggccatgtcgacggatcgggagaaggagcgggaggcggagctggagggcgccatgtac 164 ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 455 gcggccatggcgacggatcgggagaaggagcgggaagcggagctggagagcgccatgtac 514 Query: 165 accaactgcctcctcctcggcctcgatcccgccgtcctcggctccccc---gccggcgcc 221 |||||||||||||||||||||||||||| |||||||||||| |||||| || |||| Sbjct: 515 accaactgcctcctcctcggcctcgatctcgccgtcctcggttccccctcgtcccccgcc 574 Query: 222 gtccccacgcgcgtcggcctcttccgccactccaa 256 | | | | |||||||||||||||||||||||||| Sbjct: 575 gccggccctcgcgtcggcctcttccgccactccaa 609
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 176 bits (89), Expect = 2e-41 Identities = 139/155 (89%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 105 gcggccatgtcgacggatcgggagaaggagcgggaggcggagctggagggcgccatgtac 164 ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 13349413 gcggccatggcgacggatcgggagaaggagcgggaagcggagctggagagcgccatgtac 13349472 Query: 165 accaactgcctcctcctcggcctcgatcccgccgtcctcggctccccc---gccggcgcc 221 |||||||||||||||||||||||||||| |||||||||||| |||||| || |||| Sbjct: 13349473 accaactgcctcctcctcggcctcgatctcgccgtcctcggttccccctcgtcccccgcc 13349532 Query: 222 gtccccacgcgcgtcggcctcttccgccactccaa 256 | | | | |||||||||||||||||||||||||| Sbjct: 13349533 gccggccctcgcgtcggcctcttccgccactccaa 13349567 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 12409475 ccgccgtcctcggctccccc 12409494
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 176 bits (89), Expect = 2e-41 Identities = 139/155 (89%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 105 gcggccatgtcgacggatcgggagaaggagcgggaggcggagctggagggcgccatgtac 164 ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 74664 gcggccatggcgacggatcgggagaaggagcgggaagcggagctggagagcgccatgtac 74723 Query: 165 accaactgcctcctcctcggcctcgatcccgccgtcctcggctccccc---gccggcgcc 221 |||||||||||||||||||||||||||| |||||||||||| |||||| || |||| Sbjct: 74724 accaactgcctcctcctcggcctcgatctcgccgtcctcggttccccctcgtcccccgcc 74783 Query: 222 gtccccacgcgcgtcggcctcttccgccactccaa 256 | | | | |||||||||||||||||||||||||| Sbjct: 74784 gccggccctcgcgtcggcctcttccgccactccaa 74818
>dbj|AK100291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075K17, full insert sequence Length = 2969 Score = 176 bits (89), Expect = 2e-41 Identities = 139/155 (89%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 105 gcggccatgtcgacggatcgggagaaggagcgggaggcggagctggagggcgccatgtac 164 ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 455 gcggccatggcgacggatcgggagaaggagcgggaagcggagctggagagcgccatgtac 514 Query: 165 accaactgcctcctcctcggcctcgatcccgccgtcctcggctccccc---gccggcgcc 221 |||||||||||||||||||||||||||| |||||||||||| |||||| || |||| Sbjct: 515 accaactgcctcctcctcggcctcgatctcgccgtcctcggttccccctcgtcccccgcc 574 Query: 222 gtccccacgcgcgtcggcctcttccgccactccaa 256 | | | | |||||||||||||||||||||||||| Sbjct: 575 gccggccctcgcgtcggcctcttccgccactccaa 609
>gb|AF131222.1|AF131222 Lophopyrum elongatum protein serine/threonine kinase (ESI47) mRNA, complete cds Length = 1878 Score = 46.1 bits (23), Expect = 0.055 Identities = 29/31 (93%) Strand = Plus / Plus Query: 124 gggagaaggagcgggaggcggagctggaggg 154 |||||||||||||||||| ||||||| |||| Sbjct: 217 gggagaaggagcgggaggaggagctgcaggg 247
>gb|AF339747.1|AF339747 Lophopyrum elongatum protein kinase (ESI47) gene, complete cds Length = 5826 Score = 46.1 bits (23), Expect = 0.055 Identities = 29/31 (93%) Strand = Plus / Plus Query: 124 gggagaaggagcgggaggcggagctggaggg 154 |||||||||||||||||| ||||||| |||| Sbjct: 3029 gggagaaggagcgggaggaggagctgcaggg 3059
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 132453 cgggagaaggagcgggagaaggagctggag 132424
>gb|BC043094.1| Mus musculus genetic suppressor element 1, mRNA (cDNA clone MGC:58013 IMAGE:6405464), complete cds Length = 6715 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 1369 cgggagaaggagcgggagaaggagctggag 1398
>ref|NM_198671.1| Mus musculus genetic suppressor element 1 (Gse1), mRNA Length = 6715 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 1369 cgggagaaggagcgggagaaggagctggag 1398
>dbj|AK154829.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630107O20 product:genetic suppressor element 1, full insert sequence Length = 4491 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 1216 cgggagaaggagcgggagaaggagctggag 1245
>dbj|AK042915.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730038O18 product:hypothetical protein, full insert sequence Length = 4503 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 1185 cgggagaaggagcgggagaaggagctggag 1214
>dbj|AK033263.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030479A17 product:hypothetical protein, full insert sequence Length = 4613 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 1184 cgggagaaggagcgggagaaggagctggag 1213
>dbj|AK122216.1| Mus musculus mRNA for mKIAA0182 protein Length = 5742 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 519 cgggagaaggagcgggagaaggagctggag 548
>gb|L27155.1|MUSKHCSC Mouse genetic suppressor element mRNA Length = 256 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 cgggagaaggagcgggaggcggagctggag 152 |||||||||||||||||| |||||||||| Sbjct: 45 cgggagaaggagcgggagaaggagctggag 74
>ref|XM_550602.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1551 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 cgcctcctcccgctcctccca 69 ||||||||||||||||||||| Sbjct: 561 cgcctcctcccgctcctccca 581
>ref|XM_470360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 732 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 412 cggctcccccggcggcgccgtcccc 388
>ref|NM_186090.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 468 cggctcccccggcggcgccgtcccc 492
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cgcctcctcccgctcctccca 69 ||||||||||||||||||||| Sbjct: 61205 cgcctcctcccgctcctccca 61185
>ref|XM_865320.1| PREDICTED: Bos taurus similar to Polymerase I and transcript release factor (LOC614016), mRNA Length = 768 Score = 42.1 bits (21), Expect = 0.86 Identities = 27/29 (93%) Strand = Plus / Plus Query: 130 aggagcgggaggcggagctggagggcgcc 158 |||||||| |||||||| ||||||||||| Sbjct: 425 aggagcggcaggcggagatggagggcgcc 453
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 34939565 cggctcccccggcggcgccgtcccc 34939589
>gb|AC091316.2| Sus scrofa clone RP44-479G12, complete sequence Length = 155724 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cccgctcctcccaaacctagc 77 ||||||||||||||||||||| Sbjct: 35097 cccgctcctcccaaacctagc 35077
>gb|AC133652.6| Mus musculus BAC clone RP24-283H8 from chromosome 16, complete sequence Length = 177172 Score = 42.1 bits (21), Expect = 0.86 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 ggagaaggagcgggaggcggagctggagg 153 ||||||||||||||||| ||||| ||||| Sbjct: 123732 ggagaaggagcgggaggaggagcaggagg 123760
>ref|XM_624769.1| PREDICTED: Apis mellifera similar to CG9895-PA (LOC552397), mRNA Length = 1434 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ggatcgggagaaggagcggga 139 ||||||||||||||||||||| Sbjct: 894 ggatcgggagaaggagcggga 914
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 28127453 cggctcccccggcggcgccgtcccc 28127429 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cccccgccggcgccgtcccc 227 |||||||||||||||||||| Sbjct: 1883328 cccccgccggcgccgtcccc 1883347
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cgcctcctcccgctcctccca 69 ||||||||||||||||||||| Sbjct: 1740990 cgcctcctcccgctcctccca 1740970
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 35029637 cggctcccccggcggcgccgtcccc 35029661
>gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, complete sequence Length = 181497 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctccc 68 ||||||||||||||||||||| Sbjct: 76570 ccgcctcctcccgctcctccc 76590
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 75915 cggctcccccggcggcgccgtcccc 75891
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cgcctcctcccgctcctccca 69 ||||||||||||||||||||| Sbjct: 66139 cgcctcctcccgctcctccca 66119
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggctcccccgccggcgccgtcccc 227 ||||||||||| ||||||||||||| Sbjct: 110749 cggctcccccggcggcgccgtcccc 110725
>gb|U90209.1|BHU90209 Bonnemaisonia hamifera RNA polymerase II largest subunit (rpb1) mRNA, partial cds Length = 5196 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 ccgcctcctcccgctcctccc 68 ||||||||||||||||||||| Sbjct: 4523 ccgcctcctcccgctcctccc 4503
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 ccgccggcgccgtccccacgcgcgt 235 ||||||||| ||||||||||||||| Sbjct: 727679 ccgccggcgtcgtccccacgcgcgt 727703 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 cgccggcgccgtccccacgcgcgt 235 |||||||| ||||||||||||||| Sbjct: 727437 cgccggcgtcgtccccacgcgcgt 727460
>emb|AL611950.17| Mouse DNA sequence from clone RP23-45A18 on chromosome 4, complete sequence Length = 161331 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 cctagccccaacccagccacc 92 ||||||||||||||||||||| Sbjct: 20980 cctagccccaacccagccacc 20960
>ref|NM_183561.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 291 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 62 ccgccgtcctcggctccccc 81
>ref|XM_465225.1| Oryza sativa (japonica cultivar-group), mRNA Length = 387 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 245 ccgccgtcctcggctccccc 226
>ref|NM_197755.1| Oryza sativa (japonica cultivar-group) putative lipase (OSJNBb0089A17.13), mRNA Length = 1605 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cctcggctcccccgccggcgccgt 223 |||||||||| ||||||||||||| Sbjct: 1573 cctcggctccgccgccggcgccgt 1550
>ref|NM_193374.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1992 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ccgccgtcctcggctcccccgccg 216 ||||||||||||| |||||||||| Sbjct: 79 ccgccgtcctcgggtcccccgccg 56
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gccggcggccatgtcgacgg 120 |||||||||||||||||||| Sbjct: 14535 gccggcggccatgtcgacgg 14516
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcccgcctcctcccgctcc 64 |||||||||||||||||||| Sbjct: 26546 cgcccgcctcctcccgctcc 26565
>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07, complete sequence Length = 156163 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 119 ggatcgggagaaggagcgggaggcggagctggaggg 154 |||||||| | |||||||||||| ||||| |||||| Sbjct: 12862 ggatcgggggcaggagcgggaggaggagccggaggg 12827
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 914441 ccgcctcctcccgctcctcc 914460 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 904311 ccgcctcctcccgctcctcc 904330 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 901053 ccgcctcctcccgctcctcc 901072
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 agtagaagccggcggccatg 113 |||||||||||||||||||| Sbjct: 3344605 agtagaagccggcggccatg 3344624
>gb|DQ186637.1| Zea mays transposon Helitron HelA-1c, complete sequence Length = 5189 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 204 ctgcctcctcctcggcctggatcc 227
>gb|DQ186636.1| Zea mays transposon Helitron HelA1b, complete sequence Length = 5189 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 204 ctgcctcctcctcggcctggatcc 227
>gb|DQ186635.1| Zea mays transposon Helitron HelA1a, complete sequence Length = 5858 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 204 ctgcctcctcctcggcctggatcc 227
>gb|DQ188098.1| Zea mays transposon HelA-2b, partial sequence Length = 6000 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 204 ctgcctcctcctcggcctggatcc 227
>ref|XR_002953.1| PREDICTED: Mus musculus inter-alpha (globulin) inhibitor H5-like (LOC207350), mRNA Length = 4191 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 agccccaacccagccaccca 94 |||||||||||||||||||| Sbjct: 1689 agccccaacccagccaccca 1670
>gb|AF391808.2| Zea mays chromosome 9S bz genomic region strain McC Length = 226001 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 139386 ctgcctcctcctcggcctggatcc 139363
>gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, complete sequence Length = 199554 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 cgcccgcctcctcccgctcctccc 68 ||||||||||| |||||||||||| Sbjct: 100758 cgcccgcctccgcccgctcctccc 100781
>gb|DP000038.2| Colobus guereza target 106 genomic scaffold Length = 481828 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggagcgggaggcggagctgg 150 |||||||||||||||||||| Sbjct: 81577 ggagcgggaggcggagctgg 81596
>gb|DQ334067.1| Drosophila miranda CG11122 gene, partial cds Length = 1026 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agcgggaggcggagctggag 152 |||||||||||||||||||| Sbjct: 425 agcgggaggcggagctggag 444
>ref|XM_776294.1| PREDICTED: Strongylocentrotus purpuratus similar to DEAD box polypeptide 42 protein (LOC575932), mRNA Length = 1422 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 497 ccgcctcctcccgctcctcc 478
>emb|AL138968.18| Human DNA sequence from clone RP6-13I1 on chromosome Xq22.2-24 Contains the 5' end of the FACL4 gene for fatty-acid-Coenzyme A ligase, long chain and a CpG island, complete sequence Length = 63262 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aggagcgggaggcggagctggagg 153 ||||||||||||||||| |||||| Sbjct: 21210 aggagcgggaggcggaggtggagg 21233
>emb|AL008725.1|HS148E22 Human DNA sequence from clone RP1-148E22 on chromosome 20q12-13.12 Contains the YWHAB gene for tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta polypeptide, the 5' end of the C20orf119 gene for chromosome 20 open reading frame 119 and two CpG islands, complete sequence Length = 79227 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggagcgggaggcggagctgg 150 |||||||||||||||||||| Sbjct: 74062 ggagcgggaggcggagctgg 74081
>ref|NM_001030896.1| Gallus gallus similar to Ras-related GTP binding C; Rag C protein (LOC419605), mRNA Length = 3098 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ggaggcggagctggagggcg 156 |||||||||||||||||||| Sbjct: 148 ggaggcggagctggagggcg 167
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 2233164 ccgcctcctcccgctcctcc 2233183 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 2219734 ccgcctcctcccgctcctcc 2219753
>emb|AJ719695.1| Gallus gallus mRNA for hypothetical protein, clone 5g2 Length = 3098 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ggaggcggagctggagggcg 156 |||||||||||||||||||| Sbjct: 148 ggaggcggagctggagggcg 167
>gb|AC108027.5| Homo sapiens BAC clone RP11-64C8 from 4, complete sequence Length = 73256 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 ggagaaggagcgggaggcggagctggag 152 ||||| ||||||||||| |||||||||| Sbjct: 33051 ggagagggagcgggagggggagctggag 33024
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 114249 ccgccgtcctcggctccccc 114268
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cctcggcctcgatcccgccg 198 |||||||||||||||||||| Sbjct: 464187 cctcggcctcgatcccgccg 464206
>gb|DP000042.1| Lemur catta target 106 genomic scaffold Length = 452647 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggagcgggaggcggagctgg 150 |||||||||||||||||||| Sbjct: 127341 ggagcgggaggcggagctgg 127360
>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold Length = 644818 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggagcgggaggcggagctgg 150 |||||||||||||||||||| Sbjct: 64163 ggagcgggaggcggagctgg 64182
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggagcgggaggcggagctgg 150 |||||||||||||||||||| Sbjct: 96107 ggagcgggaggcggagctgg 96126
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 11511 ctgcctcctcctcggcctggatcc 11488
>gb|DQ003206.1| Zea mays transposon Helitron, complete sequence Length = 7594 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 6304 ctgcctcctcctcggcctggatcc 6281
>gb|DQ000639.1| Zea mays clone 3530_1_147_1C02 hypro2 pseudogene mRNA, complete sequence Length = 1586 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ctgcctcctcctcggcctcgatcc 193 |||||||||||||||||| ||||| Sbjct: 142 ctgcctcctcctcggcctggatcc 165
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cctcggctcccccgccggcgccgt 223 |||||||||| ||||||||||||| Sbjct: 94685 cctcggctccgccgccggcgccgt 94662
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gccggcggccatgtcgacgg 120 |||||||||||||||||||| Sbjct: 124045 gccggcggccatgtcgacgg 124064
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcccgcctcctcccgctcc 64 |||||||||||||||||||| Sbjct: 10837026 cgcccgcctcctcccgctcc 10837045
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cctcggctcccccgccggcgccgt 223 |||||||||| ||||||||||||| Sbjct: 21662781 cctcggctccgccgccggcgccgt 21662758 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 2787473 ccgccgtcctcggctccccc 2787492
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 10276077 ccgcctcctcccgctcctcc 10276096
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 119 ggatcgggagaaggagcgggaggcggagctggaggg 154 |||||||| | |||||||||||| ||||| |||||| Sbjct: 18373025 ggatcgggggcaggagcgggaggaggagccggaggg 18372990 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gccggcggccatgtcgacgg 120 |||||||||||||||||||| Sbjct: 2736209 gccggcggccatgtcgacgg 2736190
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctcccccgccg 216 ||||||||||||| |||||||||| Sbjct: 20465281 ccgccgtcctcgggtcccccgccg 20465304 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ctcccccgccggcgccgtcc 225 |||||||||||||||||||| Sbjct: 18840770 ctcccccgccggcgccgtcc 18840789 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 10306217 ccgccgtcctcggctccccc 10306198
>gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, complete sequence Length = 219070 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgtcctcggctcccccg 213 |||||||||||||||||||| Sbjct: 36190 cgccgtcctcggctcccccg 36209
>dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0042P21 Length = 141230 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctcccccgccg 216 ||||||||||||| |||||||||| Sbjct: 121396 ccgccgtcctcgggtcccccgccg 121419
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gccggcggccatgtcgacgg 120 |||||||||||||||||||| Sbjct: 2073854 gccggcggccatgtcgacgg 2073835
>dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0511C01 Length = 170402 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 12937 ccgccgtcctcggctccccc 12918
>dbj|AP004357.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1074C08 Length = 165701 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ctcccccgccggcgccgtcc 225 |||||||||||||||||||| Sbjct: 13160 ctcccccgccggcgccgtcc 13179
>dbj|AP004641.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1147B04 Length = 142956 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ctcccccgccggcgccgtcc 225 |||||||||||||||||||| Sbjct: 47781 ctcccccgccggcgccgtcc 47800
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 gtcctcggctcccccgccggcgcc 221 |||||||||||||||| ||||||| Sbjct: 1088684 gtcctcggctcccccggcggcgcc 1088661
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 89612 ccgccgtcctcggctccccc 89631
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cccccgccggcgccgtcccc 227 |||||||||||||||||||| Sbjct: 87907 cccccgccggcgccgtcccc 87926
>dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_A10 Length = 95161 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 77226 ccgcctcctcccgctcctcc 77245
>emb|AL672282.9| Mouse DNA sequence from clone RP23-448K19 on chromosome X, complete sequence Length = 167107 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 agccccaacccagccaccca 94 |||||||||||||||||||| Sbjct: 92470 agccccaacccagccaccca 92451
>dbj|AK120912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034E09, full insert sequence Length = 701 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gccggcggccatgtcgacgg 120 |||||||||||||||||||| Sbjct: 173 gccggcggccatgtcgacgg 154
>dbj|AK107536.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H04, full insert sequence Length = 1032 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 119 ggatcgggagaaggagcgggaggcggagctggaggg 154 |||||||| | |||||||||||| ||||| |||||| Sbjct: 491 ggatcgggggcaggagcgggaggaggagccggaggg 526
>dbj|AK098947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050E08, full insert sequence Length = 1849 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 122 ccgcctcctcccgctcctcc 141
>dbj|AK072043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108N11, full insert sequence Length = 1816 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 122 ccgcctcctcccgctcctcc 141
>emb|Z61479.1|HS53A1F H.sapiens CpG island DNA genomic Mse1 fragment, clone 53a1, forward read cpg53a1.ft1b Length = 220 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgtcctcggctcccccg 213 |||||||||||||||||||| Sbjct: 77 cgccgtcctcggctcccccg 96
>dbj|AK070171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O20, full insert sequence Length = 2515 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcccgcctcctcccgctcc 64 |||||||||||||||||||| Sbjct: 1279 cgcccgcctcctcccgctcc 1298
>dbj|AK068798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164B18, full insert sequence Length = 1793 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 77 ccgcctcctcccgctcctcc 96
>dbj|AK059171.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F01, full insert sequence Length = 1605 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ccgcctcctcccgctcctcc 67 |||||||||||||||||||| Sbjct: 68 ccgcctcctcccgctcctcc 87
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cctcggctcccccgccggcgccgt 223 |||||||||| ||||||||||||| Sbjct: 21674444 cctcggctccgccgccggcgccgt 21674421 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgccgtcctcggctccccc 212 |||||||||||||||||||| Sbjct: 2787424 ccgccgtcctcggctccccc 2787443
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcccgcctcctcccgctcc 64 |||||||||||||||||||| Sbjct: 10916215 cgcccgcctcctcccgctcc 10916234 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,511,009 Number of Sequences: 3902068 Number of extensions: 2511009 Number of successful extensions: 132604 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130917 Number of HSP's gapped (non-prelim): 1679 length of query: 261 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 239 effective length of database: 17,147,199,772 effective search space: 4098180745508 effective search space used: 4098180745508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
