ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast60a08 |
|---|---|
| Clone Library Name | barley_pub |
>GGR_ARATH (Q39108) Geranylgeranyl pyrophosphate synthase-related protein,| chloroplast precursor Length = 326 Score = 95.9 bits (237), Expect = 4e-20 Identities = 46/93 (49%), Positives = 60/93 (64%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 +FDLR YWT+LI+E+ +LD A+P++ P I+ AMR++VL AKRAPPV+CVAA Sbjct: 44 NFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQG-----AKRAPPVMCVAA 98 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H ASL+HDDLPC Sbjct: 99 CELFGGDRLAAFPTACALEMVHAASLIHDDLPC 131
>GGPP1_ARATH (P34802) Geranylgeranyl pyrophosphate synthetase 1, chloroplast| precursor (GGPP synthetase 1) (GGPS1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 371 Score = 74.3 bits (181), Expect = 1e-13 Identities = 39/93 (41%), Positives = 49/93 (52%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 SFD Y + V LD+A+P+R P IH AMR+++L G KR PVLC+AA Sbjct: 73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG------KRVRPVLCIAA 126 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H SL+HDDLPC Sbjct: 127 CELVGGEESTAMPAACAVEMIHTMSLIHDDLPC 159
>GGPPS_SINAL (Q43133) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 366 Score = 73.9 bits (180), Expect = 2e-13 Identities = 39/93 (41%), Positives = 48/93 (51%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 SFD Y V LD+A+P+R P IH AMR+++L G KR PVLC+AA Sbjct: 69 SFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG------KRVRPVLCIAA 122 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H SL+HDDLPC Sbjct: 123 CELVGGEESLAMPARCAVEMIHTMSLIHDDLPC 155
>GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 370 Score = 73.6 bits (179), Expect = 2e-13 Identities = 36/94 (38%), Positives = 50/94 (53%) Frame = +2 Query: 149 PSFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVA 328 PSFD + Y + + L+AA+P++ P IH +MR+++L G KR P LC+A Sbjct: 75 PSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG------KRVRPALCLA 128 Query: 329 ACEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 ACE EM+H SL+HDDLPC Sbjct: 129 ACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPC 162
>GGPP4_ARATH (Q9SLG2) Geranylgeranyl pyrophosphate synthetase 4 precursor (GGPP| synthetase 4) (GGPS4) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 372 Score = 70.9 bits (172), Expect = 1e-12 Identities = 37/93 (39%), Positives = 48/93 (51%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 SFD + Y S + LD A+P+ P +IH AMR+A+L G KR P+LC+AA Sbjct: 78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG------KRVRPILCLAA 131 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H SL+ DDLPC Sbjct: 132 CELVGGEERLAIQAACAVEMIHTMSLIKDDLPC 164
>GGPP3_ARATH (Q9LUD9) Geranylgeranyl pyrophosphate synthetase 3, chloroplast| precursor (GGPP synthetase 3) (GGPS3) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 360 Score = 68.6 bits (166), Expect = 6e-12 Identities = 32/93 (34%), Positives = 48/93 (51%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 +FD + Y V LD ++P+R P ++ A+R+++L G KR P+LC+A Sbjct: 63 AFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG------KRVRPLLCIAV 116 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H +SL+HDDLPC Sbjct: 117 CELVGGDEATAMSAACAVEMIHTSSLIHDDLPC 149
>GGPPS_CATRO (Q42698) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 357 Score = 68.2 bits (165), Expect = 8e-12 Identities = 35/93 (37%), Positives = 48/93 (51%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 SFD + Y + V L+ A+ +R P IH +MR+++L G KR P+LC+AA Sbjct: 63 SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG------KRVRPMLCIAA 116 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H SL+HDDLPC Sbjct: 117 CELFGGTESVAMPSACAVEMIHTMSLMHDDLPC 149
>GGPPS_CAPAN (P80042) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 369 Score = 66.6 bits (161), Expect = 2e-11 Identities = 35/92 (38%), Positives = 47/92 (51%) Frame = +2 Query: 155 FDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAAC 334 F+ + Y T V LD A+ ++ P IH AMR+++L G KR P+LC+AAC Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG------KRVRPMLCLAAC 129 Query: 335 EXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 E EM+H SL+HDDLPC Sbjct: 130 ELVGGNQENAMAAACAVEMIHTMSLIHDDLPC 161
>GGPP2_ARATH (O04046) Geranylgeranyl pyrophosphate synthetase 2 precursor (GGPP| synthetase 2) (GGPS2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 376 Score = 64.7 bits (156), Expect = 9e-11 Identities = 34/93 (36%), Positives = 46/93 (49%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 +F+ Y S V L+ A+P+ P IH AMR+A+L A KR P+LC+A+ Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAIL------AAGKRVRPILCLAS 135 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 CE EM+H SL+ DDLPC Sbjct: 136 CELVGGQENAAMPAACAVEMIHTMSLIKDDLPC 168
>GGPP6_ARATH (O22043) Geranylgeranyl pyrophosphate synthetase 6, mitochondrial| precursor (GGPP synthetase 6) (GGPS6) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 336 Score = 55.8 bits (133), Expect = 4e-08 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 8/95 (8%) Frame = +2 Query: 170 YWTSLISEVEGELDAAMPI--------RPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCV 325 Y + + LD ++P+ P +H AMR+ +LPG KR P+LC+ Sbjct: 35 YMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGG------KRVRPMLCL 88 Query: 326 AACEXXXXXXXXXXXXXXXXEMLHGASLVHDDLPC 430 ACE EM+H ASL+ DDLPC Sbjct: 89 VACELVGGQESTAMPAACAVEMIHAASLILDDLPC 123
>CRTE_CYAPA (P48368) Geranylgeranyl pyrophosphate synthetase homolog (EC| 2.5.1.29) (GGPP synthetase) (Farnesyltranstransferase) Length = 300 Score = 51.6 bits (122), Expect = 8e-07 Identities = 29/92 (31%), Positives = 46/92 (50%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 331 +F+L Y VE L+ ++P P I++++R+++ G KR P+LC+A+ Sbjct: 7 NFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGG------KRIRPILCLAS 60 Query: 332 CEXXXXXXXXXXXXXXXXEMLHGASLVHDDLP 427 CE EM+H SL+HDDLP Sbjct: 61 CELAGGTMEMALPTACALEMIHTMSLIHDDLP 92
>CRTE_RHOS4 (P54976) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 288 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/67 (34%), Positives = 30/67 (44%) Frame = +2 Query: 233 PESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLV 412 P + A+ +AV PG A+ P +L A E++H ASLV Sbjct: 24 PSKLATALDYAVTPGG-----ARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLV 78 Query: 413 HDDLPCF 433 HDDLPCF Sbjct: 79 HDDLPCF 85
>ISPA_AQUAE (O66952) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 262 Score = 38.1 bits (87), Expect = 0.009 Identities = 22/80 (27%), Positives = 33/80 (41%) Frame = +2 Query: 191 EVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXX 370 ++E L+ + PE + AM++ L KR P+ VA Sbjct: 10 KIEKRLNEILKPEGPEELIEAMKYYPLQ------KGKRIRPLFTVAVASALGGNEDDAIT 63 Query: 371 XXXXXEMLHGASLVHDDLPC 430 E++H SL+HDDLPC Sbjct: 64 VGSGIELIHNYSLIHDDLPC 83
>ISPA_RHISN (P55539) Probable geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 332 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/59 (37%), Positives = 27/59 (45%) Frame = +2 Query: 251 AMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDDLP 427 AMR+A L G KR +LC+AA EM+H +LVHDDLP Sbjct: 65 AMRYATLHGG------KRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLP 117
>ISPA_BRAJA (Q45220) Probable geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 332 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/59 (37%), Positives = 27/59 (45%) Frame = +2 Query: 251 AMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDDLP 427 AMR+A L G KR +LC+AA EM+H +LVHDDLP Sbjct: 65 AMRYATLHGG------KRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLP 117
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 35.8 bits (81), Expect = 0.046 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = +2 Query: 179 SLISEVEGELDAAMPIRPPESIHNA--MRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXX 352 SL +E L A+ PE++ + + A LP G A+ P +L A Sbjct: 2 SLDKRIESALVKALS---PEALGESPPLLAAALPYGVFPGGARIRPTILVSVALACGDDC 58 Query: 353 XXXXXXXXXXXEMLHGASLVHDDLPCF 433 E++H ASLVHDDLP F Sbjct: 59 PAVTDAAAVALELMHCASLVHDDLPAF 85
>ISPA_BACSU (P54383) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 272 Score = 35.4 bits (80), Expect = 0.061 Identities = 19/66 (28%), Positives = 30/66 (45%) Frame = +2 Query: 233 PESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLV 412 P+S+ +M +++ G KR P++ +A EM+H SL+ Sbjct: 30 PDSLKKSMLYSLQAGG------KRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLI 83 Query: 413 HDDLPC 430 HDDLPC Sbjct: 84 HDDLPC 89
>ISPA_BUCAP (Q8K9A0) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 294 Score = 33.5 bits (75), Expect = 0.23 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +2 Query: 242 IHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDD 421 + AM+++ L G KR L A E E++H SL+HDD Sbjct: 32 LFRAMKYSTLSGG------KRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDD 85 Query: 422 LPC 430 LPC Sbjct: 86 LPC 88
>CRTE_PANAN (P21684) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 302 Score = 32.7 bits (73), Expect = 0.39 Identities = 22/83 (26%), Positives = 35/83 (42%) Frame = +2 Query: 182 LISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXX 361 L+++++ LD +P+ + A A+ GA G R +L A Sbjct: 19 LLADIDRRLDQLLPVEGERDVVGA---AMREGALAPGKRIRPMLLLLTARDLGCAVSHDG 75 Query: 362 XXXXXXXXEMLHGASLVHDDLPC 430 EM+H ASL+ DD+PC Sbjct: 76 LLDLACAVEMVHAASLILDDMPC 98
>IDSA_METTM (Q53479) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 324 Score = 32.3 bits (72), Expect = 0.51 Identities = 16/64 (25%), Positives = 27/64 (42%) Frame = +2 Query: 233 PESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLV 412 P+++ A H + G K+ P L + +CE E++H SL+ Sbjct: 27 PDTLLKASEHLITAGG------KKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLI 80 Query: 413 HDDL 424 HDD+ Sbjct: 81 HDDI 84
>ISPA_HAEIN (P45204) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 295 Score = 32.0 bits (71), Expect = 0.67 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = +2 Query: 251 AMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDDLP 427 AM++A+L G KR P L A + E +H SL+HDDLP Sbjct: 36 AMKYALLLGG------KRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLP 88
>ISPA_BACST (Q08291) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 297 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/65 (27%), Positives = 27/65 (41%) Frame = +2 Query: 233 PESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLV 412 P + AM +++ E KR P+L ++ EM+H SL+ Sbjct: 31 PAKLKKAMAYSL------EAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLI 84 Query: 413 HDDLP 427 HDDLP Sbjct: 85 HDDLP 89
>ISPA_MICLU (O66126) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 291 Score = 31.2 bits (69), Expect = 1.1 Identities = 17/62 (27%), Positives = 27/62 (43%) Frame = +2 Query: 242 IHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDD 421 +H A+ +++ G KR P+L + + EM+H SL+HDD Sbjct: 31 LHEAINYSLSAGG------KRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDD 84 Query: 422 LP 427 LP Sbjct: 85 LP 86
>ISPA_BUCAI (P57537) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 282 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +2 Query: 239 SIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHD 418 S+ AM+++V G+ KR L + + E +H SL+HD Sbjct: 31 SLLKAMKYSVFSGS------KRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHD 84 Query: 419 DLPC 430 DLPC Sbjct: 85 DLPC 88
>ISPB_HAEIN (P44916) Octaprenyl-diphosphate synthase (EC 2.5.1.-) (Octaprenyl| pyrophosphate synthetase) (OPP synthetase) Length = 329 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +2 Query: 287 EGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDDL 424 +G KR P++ V A E +H ASL+HDD+ Sbjct: 47 QGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDV 92
>NHR64_CAEEL (O44960) Nuclear hormone receptor family member nhr-64| Length = 412 Score = 29.6 bits (65), Expect = 3.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 239 SIHNAMRHAVLPGAGKEGAAKRAPPVLC 322 SI N M +LP GK K +PP++C Sbjct: 383 SIDNLMLELMLPNEGKNTTDKTSPPIMC 410
>IDSA_METTH (O26156) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 325 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/64 (25%), Positives = 26/64 (40%) Frame = +2 Query: 233 PESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLV 412 PE++ A H + G K+ P L + + E E++H SL+ Sbjct: 28 PETLLRASEHLITAGG------KKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLI 81 Query: 413 HDDL 424 HDD+ Sbjct: 82 HDDI 85
>ISPB_SHIFL (P0AD58) Octaprenyl-diphosphate synthase (EC 2.5.1.-) (Octaprenyl| pyrophosphate synthetase) (OPP synthetase) Length = 323 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = +2 Query: 290 GAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDDL 424 G KR P++ V A E +H A+L+HDD+ Sbjct: 42 GGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV 86
>ISPB_ECOLI (P0AD57) Octaprenyl-diphosphate synthase (EC 2.5.1.-) (Octaprenyl| pyrophosphate synthetase) (OPP synthetase) Length = 323 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = +2 Query: 290 GAAKRAPPVLCVAACEXXXXXXXXXXXXXXXXEMLHGASLVHDDL 424 G KR P++ V A E +H A+L+HDD+ Sbjct: 42 GGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV 86
>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting| protein) (RING finger protein 90) Length = 511 Score = 28.5 bits (62), Expect = 7.4 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 11/56 (19%) Frame = +2 Query: 179 SLISEVEGELDAAMPI---RPPESI---HNAMRHAV-----LPGAGKEGAAKRAPP 313 +L +E++GE ++ + R P S+ H+ R + PGAG GAA RAPP Sbjct: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPP 73
>IDSA_METJA (Q58270) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 327 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/82 (20%), Positives = 34/82 (41%) Frame = +2 Query: 179 SLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAACEXXXXXXX 358 +++ +++ EL + + ++NA +H + G KR P L V Sbjct: 16 NILQKIDEELKTY--VDKDDKLYNASKHLLFAGG------KRIRPYLTVVTYMLKKDDIE 67 Query: 359 XXXXXXXXXEMLHGASLVHDDL 424 E++H +L+HDD+ Sbjct: 68 EVLPAAAAVELIHNYTLIHDDI 89
>RPOB2_METJA (Q58444) DNA-directed RNA polymerase subunit B'' (EC 2.7.7.6)| Length = 498 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +2 Query: 152 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLC 322 S D R++ ++ ++ E+ I PE + V PG K+ KRA VLC Sbjct: 240 SIDDERFFMEIVLNIQ-EIREEHNINSPEDALEFIGKRVAPGQAKDYRLKRAETVLC 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,188,083 Number of Sequences: 219361 Number of extensions: 544278 Number of successful extensions: 1701 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1691 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
