ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 60 gctttttgatggaaataaattcaccggtgacatcccggactctcttgggtttgttagtac 119 ||||||||||||||| |||||||| ||| | ||||| |||||||||||| |||||| ||| Sbjct: 12092872 gctttttgatggaaacaaattcactggtaatatcccagactctcttgggcttgttactac 12092931 Query: 120 actcgaagttgt 131 ||| |||||||| Sbjct: 12092932 acttgaagttgt 12092943 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 1 caattgtctggtcccatcccagatgctctcttcagccctgagatgacactgat 53 |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 12092729 caattgtccggtccaatcccagatgccctcttcagtcctgagatgacactgat 12092781 Score = 69.9 bits (35), Expect = 6e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 274 gatctgagtaacaacacatttgatccttccccgagcccacagtggttttggaagttgcca 333 |||||||| |||||||| || || ||||| || |||||||| |||||||||| | ||||| Sbjct: 12093388 gatctgagcaacaacacgttcgacccttctcctagcccacaatggttttggaggctgcca 12093447 Query: 334 cagctctcggctctg 348 |||||||| |||||| Sbjct: 12093448 cagctctcagctctg 12093462 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 208 ttagccaacaaccagcttaacggaccgttgcctaatctatc 248 ||||||||||||||||||| ||| || |||||| ||||||| Sbjct: 12093227 ttagccaacaaccagcttaccggcccattgcctgatctatc 12093267 Score = 48.1 bits (24), Expect = 0.022 Identities = 60/72 (83%) Strand = Plus / Plus Query: 132 ccggctggatagaaattccctctccggcccggttccggcgaacctgaataacctcaccaa 191 |||||| ||||| ||||| ||||| || || ||||| | ||| |||||||||||||| || Sbjct: 12093050 ccggcttgataggaattcgctctcagggccagttccagagaatctgaataacctcactaa 12093109 Query: 192 cgtaaacgagct 203 ||||| ||||| Sbjct: 12093110 agtaaatgagct 12093121 Score = 40.1 bits (20), Expect = 5.3 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 348 gatcatacaatcc-ggagactctacggcacggtgcc 382 ||||||||||||| |||| || |||||||||||||| Sbjct: 12093566 gatcatacaatccgggaggctttacggcacggtgcc 12093601
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 60 gctttttgatggaaataaattcaccggtgacatcccggactctcttgggtttgttagtac 119 ||||||||||||||| |||||||| ||| | ||||| |||||||||||| |||||| ||| Sbjct: 12089635 gctttttgatggaaacaaattcactggtaatatcccagactctcttgggcttgttactac 12089694 Query: 120 actcgaagttgt 131 ||| |||||||| Sbjct: 12089695 acttgaagttgt 12089706 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 1 caattgtctggtcccatcccagatgctctcttcagccctgagatgacactgat 53 |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 12089492 caattgtccggtccaatcccagatgccctcttcagtcctgagatgacactgat 12089544 Score = 69.9 bits (35), Expect = 6e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 274 gatctgagtaacaacacatttgatccttccccgagcccacagtggttttggaagttgcca 333 |||||||| |||||||| || || ||||| || |||||||| |||||||||| | ||||| Sbjct: 12090151 gatctgagcaacaacacgttcgacccttctcctagcccacaatggttttggaggctgcca 12090210 Query: 334 cagctctcggctctg 348 |||||||| |||||| Sbjct: 12090211 cagctctcagctctg 12090225 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 208 ttagccaacaaccagcttaacggaccgttgcctaatctatc 248 ||||||||||||||||||| ||| || |||||| ||||||| Sbjct: 12089990 ttagccaacaaccagcttaccggcccattgcctgatctatc 12090030 Score = 48.1 bits (24), Expect = 0.022 Identities = 60/72 (83%) Strand = Plus / Plus Query: 132 ccggctggatagaaattccctctccggcccggttccggcgaacctgaataacctcaccaa 191 |||||| ||||| ||||| ||||| || || ||||| | ||| |||||||||||||| || Sbjct: 12089813 ccggcttgataggaattcgctctcagggccagttccagagaatctgaataacctcactaa 12089872 Query: 192 cgtaaacgagct 203 ||||| ||||| Sbjct: 12089873 agtaaatgagct 12089884 Score = 40.1 bits (20), Expect = 5.3 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 348 gatcatacaatcc-ggagactctacggcacggtgcc 382 ||||||||||||| |||| || |||||||||||||| Sbjct: 12090329 gatcatacaatccgggaggctttacggcacggtgcc 12090364
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 60 gctttttgatggaaataaattcaccggtgacatcccggactctcttgggtttgttagtac 119 ||||||||||||||| |||||||| ||| | ||||| |||||||||||| |||||| ||| Sbjct: 113452 gctttttgatggaaacaaattcactggtaatatcccagactctcttgggcttgttactac 113511 Query: 120 actcgaagttgt 131 ||| |||||||| Sbjct: 113512 acttgaagttgt 113523 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 1 caattgtctggtcccatcccagatgctctcttcagccctgagatgacactgat 53 |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 113309 caattgtccggtccaatcccagatgccctcttcagtcctgagatgacactgat 113361 Score = 69.9 bits (35), Expect = 6e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 274 gatctgagtaacaacacatttgatccttccccgagcccacagtggttttggaagttgcca 333 |||||||| |||||||| || || ||||| || |||||||| |||||||||| | ||||| Sbjct: 113968 gatctgagcaacaacacgttcgacccttctcctagcccacaatggttttggaggctgcca 114027 Query: 334 cagctctcggctctg 348 |||||||| |||||| Sbjct: 114028 cagctctcagctctg 114042 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 208 ttagccaacaaccagcttaacggaccgttgcctaatctatc 248 ||||||||||||||||||| ||| || |||||| ||||||| Sbjct: 113807 ttagccaacaaccagcttaccggcccattgcctgatctatc 113847 Score = 48.1 bits (24), Expect = 0.022 Identities = 60/72 (83%) Strand = Plus / Plus Query: 132 ccggctggatagaaattccctctccggcccggttccggcgaacctgaataacctcaccaa 191 |||||| ||||| ||||| ||||| || || ||||| | ||| |||||||||||||| || Sbjct: 113630 ccggcttgataggaattcgctctcagggccagttccagagaatctgaataacctcactaa 113689 Query: 192 cgtaaacgagct 203 ||||| ||||| Sbjct: 113690 agtaaatgagct 113701 Score = 40.1 bits (20), Expect = 5.3 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 348 gatcatacaatcc-ggagactctacggcacggtgcc 382 ||||||||||||| |||| || |||||||||||||| Sbjct: 114146 gatcatacaatccgggaggctttacggcacggtgcc 114181
>ref|XM_475450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2730 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 tgagtaacaacacatttgatccttc 302 |||| |||||||||||||||||||| Sbjct: 701 tgagcaacaacacatttgatccttc 725 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 111 tgttagtacactcgaagttgtccggctggatag 143 ||||||||||||||||||| |||| ||||||| Sbjct: 534 tgttagtacactcgaagttctccgattggatag 566
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02, complete sequence Length = 127642 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 tgagtaacaacacatttgatccttc 302 |||| |||||||||||||||||||| Sbjct: 38613 tgagcaacaacacatttgatccttc 38589
>gb|AC021491.16| Homo sapiens chromosome 17, clone RP11-94C24, complete sequence Length = 175262 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ttttgatggaaataaattcac 83 ||||||||||||||||||||| Sbjct: 139064 ttttgatggaaataaattcac 139044
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 tgagtaacaacacatttgatccttc 302 |||| |||||||||||||||||||| Sbjct: 23757792 tgagcaacaacacatttgatccttc 23757768
>gb|AY116368.1| Cottus pollux cytochrome b (cytb) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1141 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 acactgattcatctgcttttt 66 ||||||||||||||||||||| Sbjct: 577 acactgattcatctgcttttt 597
>dbj|AK119823.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D06, full insert sequence Length = 3176 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 tgagtaacaacacatttgatccttc 302 |||| |||||||||||||||||||| Sbjct: 999 tgagcaacaacacatttgatccttc 1023 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 111 tgttagtacactcgaagttgtccggctggatag 143 ||||||||||||||||||| |||| ||||||| Sbjct: 832 tgttagtacactcgaagttctccgattggatag 864
>dbj|AK105683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B07, full insert sequence Length = 2509 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 tgagtaacaacacatttgatccttc 302 |||| |||||||||||||||||||| Sbjct: 473 tgagcaacaacacatttgatccttc 497 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 111 tgttagtacactcgaagttgtccggctggatag 143 ||||||||||||||||||| |||| ||||||| Sbjct: 306 tgttagtacactcgaagttctccgattggatag 338
>dbj|AP001207.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1562D12 Length = 153936 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 ccatcccagatgctctcttcagccc 38 ||||| ||||||||||||||||||| Sbjct: 108572 ccatcacagatgctctcttcagccc 108548
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 ccggcccggttccggcgaac 174 |||||||||||||||||||| Sbjct: 1759054 ccggcccggttccggcgaac 1759035
>gb|AC127683.10| Mus musculus BAC clone RP24-171F12 from chromosome 7, complete sequence Length = 158570 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ttgccacagctctcggctct 347 |||||||||||||||||||| Sbjct: 2764 ttgccacagctctcggctct 2745
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gattcatctgctttttgatg 70 |||||||||||||||||||| Sbjct: 1667619 gattcatctgctttttgatg 1667600
>gb|AY078406.1| Pestivirus type 1 polyprotein gene, partial cds Length = 3240 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ctttttgatggaaataaatt 80 |||||||||||||||||||| Sbjct: 2320 ctttttgatggaaataaatt 2339
>gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, complete sequence Length = 227676 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ttgccacagctctcggctct 347 |||||||||||||||||||| Sbjct: 163513 ttgccacagctctcggctct 163494 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,795,919 Number of Sequences: 3902068 Number of extensions: 2795919 Number of successful extensions: 49485 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49340 Number of HSP's gapped (non-prelim): 142 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
