ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60a02 |
|---|---|
| Clone Library Name | barley_pub |
>PHB2_CAEEL (P50093) Mitochondrial prohibitin complex protein 2 (Prohibitin-2)| Length = 286 Score = 121 bits (304), Expect = 8e-28 Identities = 54/90 (60%), Positives = 71/90 (78%) Frame = +1 Query: 163 KTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRD 342 ++++ VE GHRAI+FNR+ G+ +Y EG H IPWF+ PIIYD+RARPN + S +GS+D Sbjct: 30 QSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKD 89 Query: 343 LQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 LQMV IGLRVL+RP PE L +YRTLG+N+ Sbjct: 90 LQMVNIGLRVLSRPNPEHLVHIYRTLGQNW 119
>PHB2_YEAST (P50085) Prohibitin-2| Length = 315 Score = 118 bits (296), Expect = 6e-27 Identities = 51/91 (56%), Positives = 71/91 (78%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N L+NV+GGHRAIV++R+ G+ +++ EGTH + PW + PIIYDVRA+P V S +G++ Sbjct: 55 NNALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTK 114 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQMV I RVL+RP +LPT+YRTLG++Y Sbjct: 115 DLQMVNITCRVLSRPDVVQLPTIYRTLGQDY 145
>L2CC_DROME (P24156) Protein l(2)37Cc| Length = 276 Score = 116 bits (290), Expect = 3e-26 Identities = 51/91 (56%), Positives = 69/91 (75%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N LYNVEGGHRA++F+R GIK+ V EGTH IPW +RPII+D+R++P V +GS+ Sbjct: 24 NSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK 83 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQ V I LR+L RP+P++LP +Y LG++Y Sbjct: 84 DLQNVNITLRILYRPIPDQLPKIYTILGQDY 114
>PHB2_RAT (Q5XIH7) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (BAP-37) Length = 299 Score = 114 bits (286), Expect = 9e-26 Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Frame = +1 Query: 82 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 258 R+PS P ++++ VEGGHRAI FNR+ G++ D + EG H Sbjct: 11 RLPSGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70 Query: 259 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 IPWF+ PIIYD+RARP + S +GS+DLQMV I LRVL+RP + LP+MY+ LG +Y Sbjct: 71 RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDY 128
>PHB2_MOUSE (O35129) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (Repressor of estrogen receptor activity) Length = 299 Score = 113 bits (283), Expect = 2e-25 Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Frame = +1 Query: 82 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 258 R+P+ P ++++ VEGGHRAI FNR+ G++ D + EG H Sbjct: 11 RLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70 Query: 259 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 IPWF+ PIIYD+RARP + S +GS+DLQMV I LRVL+RP + LP+MY+ LG +Y Sbjct: 71 RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDY 128
>PHB2_HUMAN (Q99623) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (Repressor of estrogen receptor activity) (D-prohibitin) Length = 299 Score = 113 bits (283), Expect = 2e-25 Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Frame = +1 Query: 82 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 258 R+P+ P ++++ VEGGHRAI FNR+ G++ D + EG H Sbjct: 11 RLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70 Query: 259 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 IPWF+ PIIYD+RARP + S +GS+DLQMV I LRVL+RP + LP+MY+ LG +Y Sbjct: 71 RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDY 128
>PHB1_CAEEL (Q9BKU4) Mitochondrial prohibitin complex protein 1 (Prohibitin-1)| Length = 275 Score = 108 bits (271), Expect = 5e-24 Identities = 46/88 (52%), Positives = 67/88 (76%) Frame = +1 Query: 169 LYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRDLQ 348 LYNV+GG RA++F+R G+K++V EGTH +IPW ++PII+D+R+ P V + +GS+DLQ Sbjct: 30 LYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQ 89 Query: 349 MVRIGLRVLTRPMPERLPTMYRTLGENY 432 V I LR+L RP P+RLP +Y +G +Y Sbjct: 90 NVNITLRILHRPSPDRLPNIYLNIGLDY 117
>PHB_RAT (P67779) Prohibitin| Length = 272 Score = 108 bits (270), Expect = 7e-24 Identities = 47/91 (51%), Positives = 67/91 (73%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQ V I LR+L RP+ +LP +Y ++GE+Y Sbjct: 84 DLQNVNITLRILFRPVASQLPRIYTSIGEDY 114
>PHB_MOUSE (P67778) Prohibitin (B-cell receptor-associated protein 32) (BAP| 32) Length = 272 Score = 108 bits (270), Expect = 7e-24 Identities = 47/91 (51%), Positives = 67/91 (73%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQ V I LR+L RP+ +LP +Y ++GE+Y Sbjct: 84 DLQNVNITLRILFRPVASQLPRIYTSIGEDY 114
>PHB_HUMAN (P35232) Prohibitin| Length = 272 Score = 107 bits (266), Expect = 2e-23 Identities = 46/91 (50%), Positives = 67/91 (73%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQ V I LR+L RP+ +LP ++ ++GE+Y Sbjct: 84 DLQNVNITLRILFRPVASQLPRIFTSIGEDY 114
>PHB_CHICK (P84173) Prohibitin| Length = 272 Score = 107 bits (266), Expect = 2e-23 Identities = 45/91 (49%), Positives = 67/91 (73%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP + +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSK 83 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQ V I LR+L RP+ +LP ++ ++GE+Y Sbjct: 84 DLQNVNITLRILFRPVTAQLPRIFTSIGEDY 114
>PHB_BOVIN (Q3T165) Prohibitin| Length = 272 Score = 107 bits (266), Expect = 2e-23 Identities = 46/91 (50%), Positives = 67/91 (73%) Frame = +1 Query: 160 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 339 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 340 DLQMVRIGLRVLTRPMPERLPTMYRTLGENY 432 DLQ V I LR+L RP+ +LP ++ ++GE+Y Sbjct: 84 DLQNVNITLRILFRPVASQLPRIFTSIGEDY 114
>PHB1_YEAST (P40961) Prohibitin-1| Length = 287 Score = 99.4 bits (246), Expect = 4e-21 Identities = 41/89 (46%), Positives = 66/89 (74%) Frame = +1 Query: 166 TLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRDL 345 ++Y+V+GG R ++F+R+ G+K +V EGTH ++PW ++ IIYDVR +P + + +G++DL Sbjct: 28 SMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYDVRTKPKSIATNTGTKDL 87 Query: 346 QMVRIGLRVLTRPMPERLPTMYRTLGENY 432 QMV + LRVL RP +LP +Y+ LG +Y Sbjct: 88 QMVSLTLRVLHRPEVLQLPAIYQNLGLDY 116
>HAND2_CHICK (Q90690) Heart- and neural crest derivatives-expressed protein 2| (Deciduum, heart, autonomic nervous system and neural crest derivatives-expressed protein 2) (dHAND) Length = 216 Score = 33.5 bits (75), Expect = 0.27 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 237 LPGGHPHRHPLVR-EAHHLRRPRAAQPRREHLREPGSPDGENWSSCSY 377 L GG PH HP+V E + LRR R + RR LR G P W S+ Sbjct: 3 LVGGFPH-HPVVHHEGYPLRRRRCRRRRRHPLRPRGEPLLHGWLISSH 49
>LAG3_CAEEL (Q09260) Protein lag-3 (Abnormal germ line proliferation protein 3)| (Abnormal cell lineage protein 3) Length = 490 Score = 33.5 bits (75), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +3 Query: 198 HRLQPPRGDQGQGLPGGHP---HRHPLVREAHHLRRPRA 305 H+ Q G G+P G+P H HP AHH+ +P A Sbjct: 447 HQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHMPQPTA 485
>RP54_KLEOX (P06223) RNA polymerase sigma-54 factor| Length = 477 Score = 32.0 bits (71), Expect = 0.79 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = -1 Query: 324 ALDEVGPRADVVDDGPLEPGDDDVGALRVDLVLDPLEAVEDDGPVASLDVVEGLVAEVER 145 A+D+ G V+D GDD++G V+ VL ++ + G VA+ D+ + L+ ++ + Sbjct: 147 AVDDTGYLTISVEDIVESIGDDEIGLEEVEAVLKRIQRFDPVG-VAAKDLRDCLLVQLSQ 205 Query: 144 GAAEQPELDQ 115 A E P +++ Sbjct: 206 FAKETPWIEE 215
>NEO1_HUMAN (Q92859) Neogenin precursor| Length = 1461 Score = 31.6 bits (70), Expect = 1.0 Identities = 19/47 (40%), Positives = 20/47 (42%) Frame = +3 Query: 207 QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 347 QPP Q + HP H L HH A P R HL PGSP Sbjct: 1244 QPP-----QPVISAHPI-HSLDNPHHHFHSSSLASPARSHLYHPGSP 1284
>IF2P_NATPD (Q3IMS5) Probable translation initiation factor IF-2| Length = 602 Score = 30.8 bits (68), Expect = 1.8 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = -1 Query: 384 GSCKNTKTNSHHLEIPAPGGALDEVGPRADVVDDGPLEPGDDDVGALRVDLVLD-PLEAV 208 GS + EIP + +V PR V EP + V A VD++ D EA Sbjct: 372 GSLEAIAAALEEAEIPIVRAEVGDVAPRDIAVASTAEEPKHEAVLAFNVDVLDDAEREAE 431 Query: 207 EDDGPVASLDVVEGLVAEVERGAAEQPELDQ 115 E D + + DV+ LV E + E E Q Sbjct: 432 EKDVKLFADDVIYQLVEEYDDYVTEIEEAQQ 462
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Frame = +3 Query: 207 QPPRGDQGQGL--PGGHPHRHPLVREAHHLRRPRAAQP---------RREHLREPGSP 347 Q PRG G HP R L + H RPR QP R HLR+ P Sbjct: 137 QHPRGRHASDRVQDGAHPRRQRLREQPRHAGRPRRRQPPRRGRSRGTHRRHLRQAPRP 194
>ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-rich| transcription factor ALX3) Length = 343 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +3 Query: 231 QGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 347 QG P PH HP L R A P +L EP P Sbjct: 29 QGTPAAAPHLHPAPPRGPRLTRFPACGPLEPYLPEPAKP 67
>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich| transcription factor ALX3) Length = 343 Score = 30.0 bits (66), Expect = 3.0 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +3 Query: 231 QGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 347 QG P PH HP L R A P +L EP P Sbjct: 29 QGTPDAAPHLHPAPPRGPRLSRFPACGPLEPYLPEPAKP 67
>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)| (P-Frk) Length = 375 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +3 Query: 240 PGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGE 356 P HPH HP AHHL A P H P G+ Sbjct: 285 PPPHPHPHP---HAHHLHAAAAPPPAPPHHGAAAPPPGQ 320
>FOXL2_HUMAN (P58012) Forkhead box protein L2| Length = 376 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +3 Query: 240 PGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGE 356 P HPH HP AHHL A P H P G+ Sbjct: 286 PPPHPHPHP---HAHHLHAAAAPPPAPPHHGAAAPPPGQ 321
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 29.6 bits (65), Expect = 3.9 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Frame = +3 Query: 213 PRGDQGQGLPGGHPHRH------PLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCS 374 PR G P HPHR P HH R RAA P S E+ SSC Sbjct: 1220 PRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCP 1279 Query: 375 YTTHARETT 401 AR T Sbjct: 1280 RAAPARRLT 1288
>SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1070 Score = 29.3 bits (64), Expect = 5.1 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -1 Query: 387 HGSCKNTKTNSHHLEIPAPGGALDEV--GPRADVVDDGPLEPGDDDVGAL 244 HG + N+ +E+ PG A DE+ RAD+ + GP DD GA+ Sbjct: 868 HGDLLADRLNTRAIEVVEPGAAWDELAYSARADMSELGP--AFGDDAGAV 915
>XERC2_RALSO (Q8XTL6) Tyrosine recombinase xerC 2| Length = 347 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 169 LYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLV 318 LY+V+ R +G KD+V P G + W +R Y + ARP L+ Sbjct: 179 LYDVDATRRLAFVRDGKGAKDRVVPVGVR-ALAWLDR---YLLEARPQLI 224
>Y603_ENCCU (Q8STJ4) Hypothetical protein ECU06_0030/ECU06_1690/ECU11_0020| Length = 248 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/71 (28%), Positives = 34/71 (47%) Frame = +3 Query: 249 HPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCSYTTHARETTNYVQDPGGE 428 HP R+ L +AHHLR P + R+P +N S+ T+ + + + D + Sbjct: 31 HPSRYHLHLQAHHLRSPLLSASAENRRRDP-----QNLSTTKATSPSTHQSPILPD---D 82 Query: 429 LHERVLPSSFM 461 +H +LP + M Sbjct: 83 IHS-ILPFAHM 92
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +3 Query: 201 RLQPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCSYT 380 + QPPR + + G H + H+ +P AQ +E LR PGSP + S T Sbjct: 1038 KCQPPR-KKSHRVSGKERPNHSR-GDPSHVTQPPPAQGSKEVLRAPGSPHSQQLHPPSPT 1095 Query: 381 TH 386 H Sbjct: 1096 EH 1097
>NEO1_MOUSE (P97798) Neogenin precursor| Length = 1493 Score = 29.3 bits (64), Expect = 5.1 Identities = 18/47 (38%), Positives = 19/47 (40%) Frame = +3 Query: 207 QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 347 QPP Q + HP H L HH A P R HL P SP Sbjct: 1275 QPP-----QPVISAHPI-HSLDNPHHHFHSSSLASPARSHLYHPSSP 1315
>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 652 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -1 Query: 288 DDGPLEPGDDDVGALRVDLVLDPLEAVEDDGPVASLDVVEGLVAE 154 D+GP EP DD+ G + + E DDG ++ +EG + E Sbjct: 200 DEGPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELRE 244
>SPEE1_RALSO (Q8XQC5) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 510 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 332 PEVLSTRLGRARTS*MMGLSNQGMTMWVPSG*TLSLIPSRRLKTMARW 189 P VL+ RLG RT + GL N + +W L S RL+ W Sbjct: 156 PLVLAPRLGLVRTGFLFGLCNTAIAVWTLWHFRAELGLSARLRGAMAW 203
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 28.9 bits (63), Expect = 6.7 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Frame = +3 Query: 210 PPRGDQGQGLPGGHPHRHPLVREA-----HHLRRPRAAQPRREHLREPGSPDGENWSSCS 374 PPR G P HPHR A HH R RAA P S E+ SSC Sbjct: 1207 PPRRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRSLEDLSSCP 1266 Query: 375 YTTHARETT 401 R T Sbjct: 1267 RAAPTRRLT 1275
>SPEE2_RALSO (Q8XQC8) Probable spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 525 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 332 PEVLSTRLGRARTS*MMGLSNQGMTMWVPSG*TLSLIPSRRLKTMARW 189 P VL+ RLG RT + GL N + +W L S RL+ W Sbjct: 171 PLVLAPRLGLVRTGFLFGLCNTAIAVWTLWHFRAELGLSARLRGAMAW 218
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +3 Query: 207 QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQP-RREHLREPGSP 347 QPP GQ P P + V + HH R + P HLRE SP Sbjct: 1018 QPPHPPPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLREAPSP 1065
>MURG_NITOC (Q3J789) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 359 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -2 Query: 281 GLSNQGMTMWVPSG*TLSLIPSRRLKTMARWPPSTL 174 GL +G+T W+ + L L S+ L+ + RW P+ + Sbjct: 61 GLRGKGLTHWLRAPFKLLLALSQALRALRRWQPAVV 96
>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)| Length = 616 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 204 LQPPRGDQGQGLPGGHPHRH 263 L+ RG + QGLP HPH H Sbjct: 581 LEGIRGSRAQGLPARHPHPH 600
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +3 Query: 198 HRLQPPRGD--QGQGLPGGHPHRHPLVREAHHLRRPRAAQPR-REHLREP 338 H+ Q + D QG G P HPH+H + +P+ QP +H +P Sbjct: 676 HQQQQQQADMLQGLGQPQAHPHQHQHQPPVAPMGQPQQMQPSPHQHPMDP 725
>YAEI_ECOLI (P37049) Phosphodiesterase yaeI (EC 3.1.4.-)| Length = 270 Score = 28.5 bits (62), Expect = 8.7 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = -1 Query: 393 LWHGSCKNTKTNSHHLEIPAPGGALDEVGPRADVVDDGPLEP---GDDDVGALRVDLVLD 223 LW G CK + +L P L +V+ D P + G G LRV LV + Sbjct: 167 LWAGQCKPPPASEANL----PRLVLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVPLVGE 222 Query: 222 PLEAVEDDGPVASLD 178 P VED VA L+ Sbjct: 223 PFAPVEDKRYVAGLN 237
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/50 (32%), Positives = 19/50 (38%) Frame = +3 Query: 198 HRLQPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 347 H PP G +G P G P HP H +R P P + P P Sbjct: 343 HPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPP 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,609,799 Number of Sequences: 219361 Number of extensions: 1326625 Number of successful extensions: 4314 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4012 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4301 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
