ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60a01 |
|---|---|
| Clone Library Name | barley_pub |
>MPU1_ARATH (Q9LTI3) Mannose-P-dolichol utilization defect 1 protein homolog| Length = 239 Score = 75.1 bits (183), Expect = 8e-14 Identities = 33/61 (54%), Positives = 48/61 (78%) Frame = +2 Query: 272 LEILGMNFGCVLSALADAKIPEKQCLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVR 451 ++ LG++ C + +L + + P K CLLPL+SKLLGY +VAAS TVKLPQI+KI+ ++SV+ Sbjct: 1 MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVK 60 Query: 452 G 454 G Sbjct: 61 G 61
>MPU1_DROME (Q9VMW8) Mannose-P-dolichol utilization defect 1 protein homolog| Length = 252 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/37 (51%), Positives = 24/37 (64%) Frame = +2 Query: 344 CLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVRG 454 C L+SK LG I+A S VK+PQ+LKIL +S G Sbjct: 32 CFKALLSKGLGLAIIAGSVLVKVPQVLKILNSKSGEG 68
>MPU1_CRIGR (Q60441) Mannose-P-dolichol utilization defect 1 protein| (Suppressor of Lec15 and Lec35 glycosylation mutation) (SL15) Length = 247 Score = 38.5 bits (88), Expect = 0.008 Identities = 22/37 (59%), Positives = 24/37 (64%) Frame = +2 Query: 344 CLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVRG 454 CL L+SK LG IVA S VKLPQI KIL +S G Sbjct: 37 CLKILLSKGLGLGIVAGSLLVKLPQIFKILGAKSAEG 73
>MPU1_MOUSE (Q9R0Q9) Mannose-P-dolichol utilization defect 1 protein| (Suppressor of Lec15 and Lec35 glycosylation mutation homolog) (SL15) Length = 247 Score = 37.4 bits (85), Expect = 0.018 Identities = 20/37 (54%), Positives = 24/37 (64%) Frame = +2 Query: 344 CLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVRG 454 CL L+SK LG IVA S VKLPQ+ K+L +S G Sbjct: 37 CLKILLSKGLGLGIVAGSLLVKLPQVFKLLGAKSAEG 73
>MPU1_HUMAN (O75352) Mannose-P-dolichol utilization defect 1 protein| (Suppressor of Lec15 and Lec35 glycosylation mutation homolog) (SL15) Length = 247 Score = 35.8 bits (81), Expect = 0.053 Identities = 20/37 (54%), Positives = 23/37 (62%) Frame = +2 Query: 344 CLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVRG 454 CL L+SK LG IVA S VKLPQ+ KI +S G Sbjct: 37 CLKILLSKGLGLGIVAGSLLVKLPQVFKIRGAKSAEG 73
>SSH1_MOUSE (Q76I79) Protein phosphatase Slingshot homolog 1 (EC 3.1.3.48) (EC| 3.1.3.16) (SSH-1L) (mSSH-1L) Length = 1042 Score = 33.9 bits (76), Expect = 0.20 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = -1 Query: 321 SASAERTQPKFMPRISSSIVSRFADHAMPISAPQSAPVGVAEQLRPAAQEGSRLKVRRTN 142 S+SA TQP F+P ++SS ++ + + P S P + L PA GSR + Sbjct: 675 SSSAICTQPTFLPHVTSSPMAHASSRSRAPERPASGPANTSPFLLPA---GSRKPDVSGS 731 Query: 141 GEGSA 127 G G+A Sbjct: 732 GAGAA 736
>PER3_MOUSE (O70361) Period circadian protein 3 (mPER3)| Length = 1113 Score = 32.7 bits (73), Expect = 0.45 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = -1 Query: 357 SGSRHCFSGILASASAERTQPKFMPRISSSIVSRFADHAMPISAPQSAPVGVA--EQLRP 184 S SRHC SG LA+A+A + +SSI D+A +S + P E L Sbjct: 951 SRSRHCTSGELATATAHQESAAASGSSASSIYFSSTDYASEVSENRQRPQDRQRDEALPG 1010 Query: 183 AAQEGSRLKVRRT 145 AA+E + RT Sbjct: 1011 AAEESIWRMIERT 1023
>SSH1_HUMAN (Q8WYL5) Protein phosphatase Slingshot homolog 1 (EC 3.1.3.48) (EC| 3.1.3.16) (SSH-1L) (hSSH-1L) Length = 1049 Score = 32.3 bits (72), Expect = 0.58 Identities = 24/65 (36%), Positives = 30/65 (46%) Frame = -1 Query: 321 SASAERTQPKFMPRISSSIVSRFADHAMPISAPQSAPVGVAEQLRPAAQEGSRLKVRRTN 142 +A A TQP F+P I+SS V+ A + P S P L PA GSR Sbjct: 672 NAPAICTQPAFLPHITSSPVAHLASRSRVPEKPASGPTEPPPFLPPA---GSRRADTSGP 728 Query: 141 GEGSA 127 G G+A Sbjct: 729 GAGAA 733
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 32.3 bits (72), Expect = 0.58 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 17/92 (18%) Frame = +1 Query: 214 SRLGS*DRHGV-VGESGDDGAGDPGHELRLR-PLGAGGRQDP---------------GET 342 S LG ++ G + E G+ G GHE L+ AGG QDP GE Sbjct: 1865 SELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEA 1924 Query: 343 VPAPARLQAPXXXXXXXXXXXQAPADTKDFEA 438 P ++AP +A +++D EA Sbjct: 1925 QPESEGVEAPEAEGDAQEAEGEAQPESEDVEA 1956
>ACHB_MOUSE (P09690) Acetylcholine receptor protein, beta subunit precursor| Length = 501 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +2 Query: 260 ETMELEILGMNFGCVLSALADAKIPEKQCLLPLVSKLLGYCIVAASTTVKLPQILKILKH 439 E M L I + V L K+PE +P++ K L + +V + +V L ++ L H Sbjct: 275 EKMGLSIFALLTLTVFLLLLADKVPETSLAVPIIIKYLMFTMVLVTFSVILSVVVLNLHH 334 Query: 440 RS 445 RS Sbjct: 335 RS 336
>ACHB_RAT (P25109) Acetylcholine receptor protein, beta subunit precursor| Length = 501 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +2 Query: 260 ETMELEILGMNFGCVLSALADAKIPEKQCLLPLVSKLLGYCIVAASTTVKLPQILKILKH 439 E M L I + V L K+PE +P++ K L + ++ + +V L ++ L H Sbjct: 275 EKMGLSIFALLTLTVFLLLLADKVPETSLAVPIIIKYLMFTMILVTFSVILSVVVLNLHH 334 Query: 440 RS 445 RS Sbjct: 335 RS 336
>ACHB_HUMAN (P11230) Acetylcholine receptor protein, beta subunit precursor| Length = 501 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +2 Query: 260 ETMELEILGMNFGCVLSALADAKIPEKQCLLPLVSKLLGYCIVAASTTVKLPQILKILKH 439 E M L I + V L K+PE +P++ K L + +V + +V L ++ L H Sbjct: 275 EKMGLSIFALLTLTVFLLLLADKVPETSLSVPIIIKYLMFTMVLVTFSVILSVVVLNLHH 334 Query: 440 RS 445 RS Sbjct: 335 RS 336
>ATPF2_HUMAN (Q8N5M1) ATP synthase mitochondrial F1 complex assembly factor 2,| mitochondrial precursor (ATP12 homolog) Length = 289 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = +1 Query: 277 DPGHELRLRPLGA-GGRQDPGETVPAPARLQAP 372 D G L RP G PG T+P+PAR AP Sbjct: 10 DGGRRLLNRPAGGPSASMSPGPTIPSPARAYAP 42
>ACHB_BOVIN (P04758) Acetylcholine receptor protein, beta subunit precursor| Length = 505 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +2 Query: 260 ETMELEILGMNFGCVLSALADAKIPEKQCLLPLVSKLLGYCIVAASTTVKLPQILKILKH 439 E M L I + V L K+PE +P++ K L + +V + +V L ++ L H Sbjct: 276 EKMGLSIFALLTLTVFLLLLADKVPETSLSVPIIIKYLMFTMVLVTFSVILSVVVLNLHH 335 Query: 440 RS 445 RS Sbjct: 336 RS 337
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 Query: 250 GESGDDGAGDPGHELRLRPLGAGGRQDPGETVPA 351 G G DGA RP GAGG D G+T PA Sbjct: 4426 GPGGADGAVAVAEGGPFRPEGAGGLGDMGDTTPA 4459
>MPU1_CAEEL (Q20157) Mannose-P-dolichol utilization defect 1 protein homolog| Length = 238 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 344 CLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVRG 454 C ++S+ LG+ I S + +PQILKI RS +G Sbjct: 28 CPKAVLSRGLGFAITLGSILLFVPQILKIQAARSAQG 64
>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) (Cav3.1c) (NBR13) Length = 2377 Score = 29.3 bits (64), Expect = 4.9 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -1 Query: 285 PRISSSIVSRFADH--AMPISAPQSAPVGVAEQLRPAAQEGSRLKVRRTNGEGSA 127 P + S++ H A P+S P+S G+ E L PA+ RRT+ GSA Sbjct: 1029 PELRKSLLPPLIIHTAATPMSLPKSTSTGLGEALGPAS--------RRTSSSGSA 1075
>DHB1_MOUSE (P51656) Estradiol 17-beta-dehydrogenase 1 (EC 1.1.1.62)| (17-beta-HSD 1) (17-beta-hydroxysteroid dehydrogenase 1) Length = 344 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/82 (26%), Positives = 36/82 (43%) Frame = +2 Query: 134 PSPLVRRTFSRDPSCAAGRSCSATPTGADWGAEIGMAWSANLETMELEILGMNFGCVLSA 313 P P +R FS + R + P+G+ + A + +NL+T E G V Sbjct: 247 PQPALRY-FSTNRFLPLARMRTEDPSGSSYVAAMHQEAFSNLQTQENAKAGAQVPGVSDT 305 Query: 314 LADAKIPEKQCLLPLVSKLLGY 379 + A I +C +P V+ LG+ Sbjct: 306 ASSALICLPECAIPRVASELGW 327
>ACHB_TORCA (P02712) Acetylcholine receptor protein, beta subunit precursor| Length = 493 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = +2 Query: 260 ETMELEILGMNFGCVLSALADAKIPEKQCLLPLVSKLLGYCIVAASTTVKLPQILKILKH 439 E M L I + V L K+PE +P++ + L + ++ + +V L ++ L H Sbjct: 271 EKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNLHH 330 Query: 440 RS 445 RS Sbjct: 331 RS 332
>FLVC2_MOUSE (Q91X85) Feline leukemia virus subgroup C receptor-related protein| 2 (Calcium-chelate transporter) (CCT) Length = 551 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 107 SGRPSVAALPSPLVRRTFSRDPSCAAGRSCSATPT 211 SG PSV+ PS + + S DPS + S SA P+ Sbjct: 46 SGHPSVSGHPSVSIHPSVSIDPSVSVRPSSSALPS 80
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = -3 Query: 385 DAVAEELGDEREQALFLRDLGVRQRREDAAEVH----AQDLQLHRLQIRRPRHADLSS 224 D + ++ DE+E+ + +R R R+ED ++ A+++Q L R R A+L++ Sbjct: 951 DQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTA 1008
>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor| Length = 1200 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 341 QCLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVR 451 +C+L ++LLG+ V + T+KL ++LK+ R+ + Sbjct: 480 RCILLRWARLLGFATVYGTVTLKLHRVLKVFLSRTAQ 516
>GP158_HUMAN (Q5T848) Probable G-protein coupled receptor 158 precursor| Length = 1215 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 341 QCLLPLVSKLLGYCIVAASTTVKLPQILKILKHRSVR 451 +C+L ++LLG+ V + T+KL ++LK+ R+ + Sbjct: 480 RCILLRWARLLGFATVYGTVTLKLHRVLKVFLSRTAQ 516
>CLAP2_BRARE (Q6NYW6) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1288 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 131 LPSPLVRRTFSRDPSCAAGRSCSATPTGADWGAEIGMAWSANLETMELEILGMNFGC-VL 307 +P P V + SR+ S + R S + G+ +GM+ S+ L + + +N G V Sbjct: 529 IPRPSVSQGCSREASRESSRDTSPVRSFTPLGSGLGMSQSSRLSSSVSAMRVLNTGSDVE 588 Query: 308 SALADA 325 ALADA Sbjct: 589 EALADA 594
>CT160_HUMAN (Q9NUG4) Protein C20orf160| Length = 571 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Frame = +1 Query: 235 RHGVVGESGDDGAGDPGHELRLRPLGAGG-----RQDPGETVPAPARLQAP 372 RHG G G GAG PG R G+GG R+ PG P P Q P Sbjct: 250 RHG--GGGGGGGAGKPGGSWERRQAGSGGGGSWERRHPG---PNPLDPQDP 295
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 28.5 bits (62), Expect = 8.4 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 14/54 (25%) Frame = +1 Query: 220 LGS*DRHGVVGESGDDG-AGDPG-----HELRLR-------PLGAGGRQ-DPGE 339 +G R G VGE GD+G GDPG E LR P+G G Q DPGE Sbjct: 1627 VGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGE 1680
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 Query: 250 GESGDDGAGDPGHELRLRPLGAGGRQDPGETVPA 351 G G DGA RP GAGG D G+T PA Sbjct: 4430 GPGGADGAVAVTDGGPFRPEGAGGLGDMGDTTPA 4463
>AMPH_ECOLI (P0AD70) Penicillin-binding protein ampH| Length = 385 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = -1 Query: 339 FSGILASAS---AERTQPKFMPRISSSIVSRFADH 244 FS +L +AS QP P +S IV R+ADH Sbjct: 7 FSAVLCAASLTSVHAAQPITEPEFASDIVDRYADH 41
>AMPH_ECO57 (P0AD71) Penicillin-binding protein ampH| Length = 385 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = -1 Query: 339 FSGILASAS---AERTQPKFMPRISSSIVSRFADH 244 FS +L +AS QP P +S IV R+ADH Sbjct: 7 FSAVLCAASLTSVHAAQPITEPEFASDIVDRYADH 41 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,420,214 Number of Sequences: 219361 Number of extensions: 789234 Number of successful extensions: 3735 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3730 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
