ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478085.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1192 Score = 244 bits (123), Expect = 2e-61 Identities = 177/195 (90%) Strand = Plus / Plus Query: 262 gacgatggagctggagatcctgggcatgaacttcggctgcgtcctctcggcgctggcgga 321 |||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| Sbjct: 126 gacgatggagctggagatcctggggatcaacttcgggtgcgtcctcgcggcgctcgcgga 185 Query: 322 cgccaagatcccggagaaacagtgcctgctcccgctcgtctccaagctcctcggctactg 381 |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| Sbjct: 186 cgccaagatcccggagaaggactgcctgctcccgctcgcctccaagctgctcggctacgc 245 Query: 382 catcgttgccgcctccaccaccgtcaagctcccgcagatactaaagattttgaagcatag 441 |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| | Sbjct: 246 catcgtcgccgcctccaccaccgtcaagctccctcagatattaaagattttgaagcacgg 305 Query: 442 aagtgttagaggact 456 |||||| |||||||| Sbjct: 306 aagtgtaagaggact 320
>dbj|AK058326.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B11, full insert sequence Length = 1192 Score = 244 bits (123), Expect = 2e-61 Identities = 177/195 (90%) Strand = Plus / Plus Query: 262 gacgatggagctggagatcctgggcatgaacttcggctgcgtcctctcggcgctggcgga 321 |||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| Sbjct: 126 gacgatggagctggagatcctggggatcaacttcgggtgcgtcctcgcggcgctcgcgga 185 Query: 322 cgccaagatcccggagaaacagtgcctgctcccgctcgtctccaagctcctcggctactg 381 |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| Sbjct: 186 cgccaagatcccggagaaggactgcctgctcccgctcgcctccaagctgctcggctacgc 245 Query: 382 catcgttgccgcctccaccaccgtcaagctcccgcagatactaaagattttgaagcatag 441 |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| | Sbjct: 246 catcgtcgccgcctccaccaccgtcaagctccctcagatattaaagattttgaagcacgg 305 Query: 442 aagtgttagaggact 456 |||||| |||||||| Sbjct: 306 aagtgtaagaggact 320
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 200 bits (101), Expect = 3e-48 Identities = 140/153 (91%) Strand = Plus / Plus Query: 262 gacgatggagctggagatcctgggcatgaacttcggctgcgtcctctcggcgctggcgga 321 |||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| Sbjct: 17351195 gacgatggagctggagatcctggggatcaacttcgggtgcgtcctcgcggcgctcgcgga 17351254 Query: 322 cgccaagatcccggagaaacagtgcctgctcccgctcgtctccaagctcctcggctactg 381 |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| Sbjct: 17351255 cgccaagatcccggagaaggactgcctgctcccgctcgcctccaagctgctcggctacgc 17351314 Query: 382 catcgttgccgcctccaccaccgtcaagctccc 414 |||||| |||||||||||||||||||||||||| Sbjct: 17351315 catcgtcgccgcctccaccaccgtcaagctccc 17351347 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 415 gcagatactaaagattttgaagcatagaagtgttagaggact 456 ||||||| |||||||||||||||| ||||||| |||||||| Sbjct: 17353770 gcagatattaaagattttgaagcacggaagtgtaagaggact 17353811
>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0640E12 Length = 167353 Score = 200 bits (101), Expect = 3e-48 Identities = 140/153 (91%) Strand = Plus / Plus Query: 262 gacgatggagctggagatcctgggcatgaacttcggctgcgtcctctcggcgctggcgga 321 |||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| Sbjct: 156320 gacgatggagctggagatcctggggatcaacttcgggtgcgtcctcgcggcgctcgcgga 156379 Query: 322 cgccaagatcccggagaaacagtgcctgctcccgctcgtctccaagctcctcggctactg 381 |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| Sbjct: 156380 cgccaagatcccggagaaggactgcctgctcccgctcgcctccaagctgctcggctacgc 156439 Query: 382 catcgttgccgcctccaccaccgtcaagctccc 414 |||||| |||||||||||||||||||||||||| Sbjct: 156440 catcgtcgccgcctccaccaccgtcaagctccc 156472 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 415 gcagatactaaagattttgaagcatagaagtgttagaggact 456 ||||||| |||||||||||||||| ||||||| |||||||| Sbjct: 158895 gcagatattaaagattttgaagcacggaagtgtaagaggact 158936
>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0434A03 Length = 146505 Score = 200 bits (101), Expect = 3e-48 Identities = 140/153 (91%) Strand = Plus / Plus Query: 262 gacgatggagctggagatcctgggcatgaacttcggctgcgtcctctcggcgctggcgga 321 |||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| Sbjct: 19419 gacgatggagctggagatcctggggatcaacttcgggtgcgtcctcgcggcgctcgcgga 19478 Query: 322 cgccaagatcccggagaaacagtgcctgctcccgctcgtctccaagctcctcggctactg 381 |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| Sbjct: 19479 cgccaagatcccggagaaggactgcctgctcccgctcgcctccaagctgctcggctacgc 19538 Query: 382 catcgttgccgcctccaccaccgtcaagctccc 414 |||||| |||||||||||||||||||||||||| Sbjct: 19539 catcgtcgccgcctccaccaccgtcaagctccc 19571 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 415 gcagatactaaagattttgaagcatagaagtgttagaggact 456 ||||||| |||||||||||||||| ||||||| |||||||| Sbjct: 21994 gcagatattaaagattttgaagcacggaagtgtaagaggact 22035
>dbj|AK108177.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A07, full insert sequence Length = 693 Score = 200 bits (101), Expect = 3e-48 Identities = 140/153 (91%) Strand = Plus / Minus Query: 262 gacgatggagctggagatcctgggcatgaacttcggctgcgtcctctcggcgctggcgga 321 |||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| Sbjct: 260 gacgatggagctggagatcctggggatcaacttcgggtgcgtcctcgcggcgctcgcgga 201 Query: 322 cgccaagatcccggagaaacagtgcctgctcccgctcgtctccaagctcctcggctactg 381 |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| Sbjct: 200 cgccaagatcccggagaaggactgcctgctcccgctcgcctccaagctgctcggctacgc 141 Query: 382 catcgttgccgcctccaccaccgtcaagctccc 414 |||||| |||||||||||||||||||||||||| Sbjct: 140 catcgtcgccgcctccaccaccgtcaagctccc 108
>gb|AY106247.1| Zea mays PCO128311 mRNA sequence Length = 1265 Score = 117 bits (59), Expect = 3e-23 Identities = 98/111 (88%) Strand = Plus / Plus Query: 346 cctgctcccgctcgtctccaagctcctcggctactgcatcgttgccgcctccaccaccgt 405 ||||||||||||| |||| ||||| ||||||||| |||||| ||||| ||||||||||| Sbjct: 380 cctgctcccgctcatctctaagctgctcggctacgccatcgtcgccgcatccaccaccgt 439 Query: 406 caagctcccgcagatactaaagattttgaagcatagaagtgttagaggact 456 ||||| || |||||||| || |||||||||||| |||||||||||||||| Sbjct: 440 gaagcttccccagatactgaaaattttgaagcatggaagtgttagaggact 490
>gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete sequence Length = 97953 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 362 tccaagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctccc 414 ||||| |||||||| ||| |||||||||||| |||||||||||||| ||||| Sbjct: 47185 tccaaactcctcggttacgccatcgttgccgcttccaccaccgtcaaactccc 47133
>gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-29a5, complete sequence Length = 124676 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 362 tccaagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctccc 414 ||||| |||||||| ||| |||||||||||| |||||||||||||| ||||| Sbjct: 58478 tccaaactcctcggttacgccatcgttgccgcttccaccaccgtcaaactccc 58426
>ref|XM_470631.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1773 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 1644 ctgcgccgccggccggagcggctccg 1619
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 7061520 ctgcgccgccggccggagcggctccg 7061495
>gb|AF335504.1| Oryza sativa (japonica cultivar-group) hemoglobin 1 (hb1), hemoglobin 3 (hb3), and hemoglobin 4 (hb4) genes, complete cds Length = 11601 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 1331 ctgcgccgccggccggagcggctccg 1306
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 20845 ctgcgccgccggccggagcggctccg 20870
>gb|AC160408.6| Mus musculus 10 BAC RP23-116I16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210970 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 ctaaagattttgaagcatagaa 443 |||||||||||||||||||||| Sbjct: 202360 ctaaagattttgaagcatagaa 202381
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 7059415 ctgcgccgccggccggagcggctccg 7059390
>gb|AC158687.2| Mus musculus 10 BAC RP24-423N13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154559 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 ctaaagattttgaagcatagaa 443 |||||||||||||||||||||| Sbjct: 7458 ctaaagattttgaagcatagaa 7479
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence Length = 136098 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 132818 ctgcgccgccggccggagcggctccg 132843
>dbj|AK108855.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B01, full insert sequence Length = 2413 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 1842 ctgcgccgccggccggagcggctccg 1817
>dbj|AK072396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081G15, full insert sequence Length = 2223 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagctgctccg 200 ||||||||||||||||||| |||||| Sbjct: 1978 ctgcgccgccggccggagcggctccg 1953
>ref|NM_116811.2| Arabidopsis thaliana unknown protein AT4G07390 mRNA, complete cds Length = 1032 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 365 aagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctcccgcagata 421 ||||| ||||| || ||| ||||||| || || | ||||||||||||||| |||||| Sbjct: 164 aagcttctcggttattgcctcgttgctgcttcaatcaccgtcaagctccctcagata 220
>gb|AY114712.1| Arabidopsis thaliana unknown protein (At4g07390) mRNA, complete cds Length = 852 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 365 aagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctcccgcagata 421 ||||| ||||| || ||| ||||||| || || | ||||||||||||||| |||||| Sbjct: 94 aagcttctcggttattgcctcgttgctgcttcaatcaccgtcaagctccctcagata 150
>gb|AY072415.1| Arabidopsis thaliana unknown protein (At4g07390) mRNA, complete cds Length = 930 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 365 aagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctcccgcagata 421 ||||| ||||| || ||| ||||||| || || | ||||||||||||||| |||||| Sbjct: 140 aagcttctcggttattgcctcgttgctgcttcaatcaccgtcaagctccctcagata 196
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 ttgccgcctccaccaccgtca 407 ||||||||||||||||||||| Sbjct: 1279123 ttgccgcctccaccaccgtca 1279103
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 ctcgtctccaagctcctcggctact 380 ||||||||||| ||||||||||||| Sbjct: 10270274 ctcgtctccaacctcctcggctact 10270298
>emb|BX828984.1|CNS0A2QJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL57ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 892 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 365 aagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctcccgcagata 421 ||||| ||||| || ||| ||||||| || || | ||||||||||||||| |||||| Sbjct: 154 aagcttctcggttattgcctcgttgctgcttcaatcaccgtcaagctccctcagata 210
>gb|AY086246.1| Arabidopsis thaliana clone 2296 mRNA, complete sequence Length = 954 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 365 aagctcctcggctactgcatcgttgccgcctccaccaccgtcaagctcccgcagata 421 ||||| ||||| || ||| ||||||| || || | ||||||||||||||| |||||| Sbjct: 164 aagcttctcggttattgcctcgttgctgcttcaatcaccgtcaagctccctcagata 220
>ref|NM_212150.1| Eremothecium gossypii AFR467Wp (AFR467W), mRNA Length = 2604 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 ttgccgcctccaccaccgtca 407 ||||||||||||||||||||| Sbjct: 187 ttgccgcctccaccaccgtca 167
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 tggtcggcgaatctggagacg 265 ||||||||||||||||||||| Sbjct: 3083547 tggtcggcgaatctggagacg 3083567
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 ctcgtctccaagctcctcggctact 380 ||||||||||| ||||||||||||| Sbjct: 10270156 ctcgtctccaacctcctcggctact 10270180
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 ctcgtctccaagctcctcggctact 380 ||||||||||| ||||||||||||| Sbjct: 33193 ctcgtctccaacctcctcggctact 33217
>ref|XM_464250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 ctcctgcgccgccggccggagctgctccgcga 203 ||||||||||||| |||||||| || |||||| Sbjct: 243 ctcctgcgccgcccgccggagcagcgccgcga 212
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ctgcgccgccggccggagct 194 |||||||||||||||||||| Sbjct: 2288198 ctgcgccgccggccggagct 2288217
>ref|XM_956320.1| Neurospora crassa OR74A hypothetical protein (NCU01327.1) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gagacgatggagctggagat 279 |||||||||||||||||||| Sbjct: 826 gagacgatggagctggagat 845
>ref|XM_326819.1| Neurospora crassa OR74A hypothetical protein (NCU01327.1) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gagacgatggagctggagat 279 |||||||||||||||||||| Sbjct: 826 gagacgatggagctggagat 845
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 cgttgccgcctccaccaccg 404 |||||||||||||||||||| Sbjct: 710688 cgttgccgcctccaccaccg 710707
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gatcggcatggcgtggtcgg 251 |||||||||||||||||||| Sbjct: 5765176 gatcggcatggcgtggtcgg 5765195
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 ctggagacgatggagctggagatc 280 ||||||||||||| |||||||||| Sbjct: 1880132 ctggagacgatggcgctggagatc 1880109
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cgccgccggccggagctgctccgcgacg 205 ||||||||||| |||| ||||||||||| Sbjct: 23458 cgccgccggcctgagccgctccgcgacg 23431
>emb|AL451017.1|NC12F11 Neurospora crassa DNA linkage group V Cosmid contig 12F11 Length = 74317 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gagacgatggagctggagat 279 |||||||||||||||||||| Sbjct: 22569 gagacgatggagctggagat 22550
>emb|CR936327.2| Medicago truncatula chromosome 5 clone mte1-68g1, COMPLETE SEQUENCE Length = 116729 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gattttgaagcatagaagtg 446 |||||||||||||||||||| Sbjct: 86924 gattttgaagcatagaagtg 86943
>dbj|AK154336.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630021I12 product:single stranded DNA binding protein 4, full insert sequence Length = 1475 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tcgccgcgctgccctccccg 142 |||||||||||||||||||| Sbjct: 42 tcgccgcgctgccctccccg 23
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 cctgcgccgccggccggagctgct 197 ||||||||| |||||||||||||| Sbjct: 1925662 cctgcgccgtcggccggagctgct 1925639
>dbj|AK157387.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830213A02 product:single stranded DNA binding protein 4, full insert sequence Length = 1555 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tcgccgcgctgccctccccg 142 |||||||||||||||||||| Sbjct: 30 tcgccgcgctgccctccccg 11
>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence Length = 198967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tcgccgcgctgccctccccg 142 |||||||||||||||||||| Sbjct: 39626 tcgccgcgctgccctccccg 39607
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 ctcctgcgccgccggccggagctgctccgcga 203 ||||||||||||| |||||||| || |||||| Sbjct: 3655587 ctcctgcgccgcccgccggagcagcgccgcga 3655556
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagct 194 |||||||||||||||||||| Sbjct: 6534560 ctgcgccgccggccggagct 6534541
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 agggttaccggtgcctcgcc 101 |||||||||||||||||||| Sbjct: 3014526 agggttaccggtgcctcgcc 3014545
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctgcgccgccggccggagc 193 |||||||||||||||||||| Sbjct: 4649814 cctgcgccgccggccggagc 4649795
>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489G09 Length = 148707 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagct 194 |||||||||||||||||||| Sbjct: 102040 ctgcgccgccggccggagct 102021
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagct 194 |||||||||||||||||||| Sbjct: 14731 ctgcgccgccggccggagct 14712
>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21 Length = 180714 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 ctcctgcgccgccggccggagctgctccgcga 203 ||||||||||||| |||||||| || |||||| Sbjct: 136877 ctcctgcgccgcccgccggagcagcgccgcga 136846
>dbj|AK073193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023K13, full insert sequence Length = 1219 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctgcgccgccggccggagct 194 |||||||||||||||||||| Sbjct: 950 ctgcgccgccggccggagct 931
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gatcggcatggcgtggtcgg 251 |||||||||||||||||||| Sbjct: 2871908 gatcggcatggcgtggtcgg 2871927
>gb|AY105432.1| Zea mays PCO138398 mRNA sequence Length = 606 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gcatcgttgccgcctccacc 400 |||||||||||||||||||| Sbjct: 455 gcatcgttgccgcctccacc 474 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,728,557 Number of Sequences: 3902068 Number of extensions: 2728557 Number of successful extensions: 56438 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55339 Number of HSP's gapped (non-prelim): 1099 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
