ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY736119.1| Triticum aestivum 20S proteasome beta 5 subunit m... 313 2e-82
2dbj|AK104520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
3dbj|AK104361.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
4dbj|AK071652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
5dbj|AB026567.1| Oryza sativa (japonica cultivar-group) OsPBE1 mR... 194 1e-46
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
7dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
8gb|BT016601.1| Zea mays clone Contig434 mRNA sequence 159 8e-36
9gb|AY103704.1| Zea mays PCO130904 mRNA sequence 159 8e-36
10dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
11dbj|AK104152.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
12gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, com... 42 1.2
13gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, com... 42 1.2
14gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, co... 42 1.2
15gb|DQ214027.1| Taeniopygia guttata clone 0058P0034B02 ankyrin-li... 40 4.8
16gb|DQ214026.1| Taeniopygia guttata clone 0058P0001C03 ankyrin-li... 40 4.8
17gb|DQ214025.1| Taeniopygia guttata clone 0058P0045H05 ankyrin-li... 40 4.8
18gb|DQ214024.1| Taeniopygia guttata clone 0058P0016G03 ankyrin-li... 40 4.8
19gb|DQ214023.1| Taeniopygia guttata clone 0058P0052B06 ankyrin-li... 40 4.8
20gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 4.8
21ref|XM_859995.1| PREDICTED: Canis familiaris similar to regulato... 40 4.8
22ref|XM_859974.1| PREDICTED: Canis familiaris similar to regulato... 40 4.8
23ref|XM_859956.1| PREDICTED: Canis familiaris similar to regulato... 40 4.8
24ref|XM_533866.2| PREDICTED: Canis familiaris similar to regulato... 40 4.8
25emb|BX063853.1|CNS09LFL Single read from an extremity of a full-... 40 4.8
26emb|BX060118.1|CNS09IJU Single read from an extremity of a full-... 40 4.8
27emb|BX054899.1|CNS09EIV Single read from an extremity of a full-... 40 4.8
28emb|BX046530.1|CNS0982E Single read from an extremity of a full-... 40 4.8
29emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 40 4.8
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
31ref|XM_311198.2| Anopheles gambiae str. PEST ENSANGP00000019083 ... 40 4.8

>gb|AY736119.1| Triticum aestivum 20S proteasome beta 5 subunit mRNA, complete cds
          Length = 860

 Score =  313 bits (158), Expect = 2e-82
 Identities = 167/170 (98%)
 Strand = Plus / Plus

                                                                       
Query: 193 agctcgccctcgagttccccacctgcgacgacttcgacgggttccagaaggcgaccaagg 252
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 107 agctcgccctcgagttccccacctgcaacgacttcgatgggttccagaaggcgaccaagg 166

                                                                       
Query: 253 cgatggtgaacaacaagaaggggaccaccacgctctccttcatcttcgacaagggcgtca 312
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 agatggtgaacaacaagaaggggaccaccacgctctccttcatcttcgacaagggcgtca 226

                                                             
Query: 313 tcgtcgccgccgactcccgggccagcatgggcggctacatatcttcgcaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcgtcgccgccgactcccgggccagcatgggcggctacatatcttcgcaa 276



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 87  gacgacgcgatgatccccaacctctccgccctcgagaaccac 128
           |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1   gacgacgcgatgattcccaacctctccgccctcgagaaccac 42



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>dbj|AK104520.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E06, full
           insert sequence
          Length = 1099

 Score =  194 bits (98), Expect = 1e-46
 Identities = 131/142 (92%)
 Strand = Plus / Plus

                                                                       
Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280
           ||||||||||||||||||||||| |||||||| |||| ||||  |||||||||| || ||
Sbjct: 182 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 241

                                                                       
Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340
           ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 242 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 301

                                 
Query: 341 gggcggctacatatcttcgcaa 362
           |||||| |||||||||||||||
Sbjct: 302 gggcggatacatatcttcgcaa 323



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>dbj|AK104361.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C04, full
           insert sequence
          Length = 1099

 Score =  194 bits (98), Expect = 1e-46
 Identities = 131/142 (92%)
 Strand = Plus / Plus

                                                                       
Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280
           ||||||||||||||||||||||| |||||||| |||| ||||  |||||||||| || ||
Sbjct: 182 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 241

                                                                       
Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340
           ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 242 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 301

                                 
Query: 341 gggcggctacatatcttcgcaa 362
           |||||| |||||||||||||||
Sbjct: 302 gggcggatacatatcttcgcaa 323



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>dbj|AK071652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E18, full
           insert sequence
          Length = 1217

 Score =  194 bits (98), Expect = 1e-46
 Identities = 131/142 (92%)
 Strand = Plus / Plus

                                                                       
Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280
           ||||||||||||||||||||||| |||||||| |||| ||||  |||||||||| || ||
Sbjct: 187 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 246

                                                                       
Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340
           ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 247 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 306

                                 
Query: 341 gggcggctacatatcttcgcaa 362
           |||||| |||||||||||||||
Sbjct: 307 gggcggatacatatcttcgcaa 328



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>dbj|AB026567.1| Oryza sativa (japonica cultivar-group) OsPBE1 mRNA for beta 5
           subunit of 20S proteasome, complete cds
          Length = 1233

 Score =  194 bits (98), Expect = 1e-46
 Identities = 131/142 (92%)
 Strand = Plus / Plus

                                                                       
Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280
           ||||||||||||||||||||||| |||||||| |||| ||||  |||||||||| || ||
Sbjct: 181 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 240

                                                                       
Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340
           ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 300

                                 
Query: 341 gggcggctacatatcttcgcaa 362
           |||||| |||||||||||||||
Sbjct: 301 gggcggatacatatcttcgcaa 322



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  170 bits (86), Expect = 2e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                           
Query: 225     ttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccaccacg 284
               ||||||||||||||||||| |||||||| |||| ||||  |||||||||| || ||||||
Sbjct: 2772703 ttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgaccacg 2772644

                                                                           
Query: 285     ctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcatgggc 344
               ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2772643 ctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcatgggc 2772584

                         
Query: 345     ggctacatat 354
               || |||||||
Sbjct: 2772583 ggatacatat 2772574



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 306     ggcgtcatcgtcgccgccgactcccgggccagca 339
               |||||| || ||||||||||||||||| ||||||
Sbjct: 2093420 ggcgtcgtcctcgccgccgactcccggaccagca 2093387



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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score =  170 bits (86), Expect = 2e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                         
Query: 225   ttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccaccacg 284
             ||||||||||||||||||| |||||||| |||| ||||  |||||||||| || ||||||
Sbjct: 16184 ttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgaccacg 16125

                                                                         
Query: 285   ctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcatgggc 344
             ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16124 ctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcatgggc 16065

                       
Query: 345   ggctacatat 354
             || |||||||
Sbjct: 16064 ggatacatat 16055



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>gb|BT016601.1| Zea mays clone Contig434 mRNA sequence
          Length = 1072

 Score =  159 bits (80), Expect = 8e-36
 Identities = 131/148 (88%)
 Strand = Plus / Plus

                                                                       
Query: 208 tccccacctgcgacgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaaca 267
           |||||| |||||||||||||||||| ||||||  ||| |||||||  |||||||| || |
Sbjct: 180 tccccatctgcgacgacttcgacggcttccaggcggccaccaaggatatggtgaagaata 239

                                                                       
Query: 268 agaaggggaccaccacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgact 327
           |||||||||| ||||||||  |||||||||||||||||||||||||||||||||| || |
Sbjct: 240 agaaggggacgaccacgcttgccttcatcttcgacaagggcgtcatcgtcgccgctgatt 299

                                       
Query: 328 cccgggccagcatgggcggctacatatc 355
           || |||||||||||||||| || |||||
Sbjct: 300 ccagggccagcatgggcggttatatatc 327



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>gb|AY103704.1| Zea mays PCO130904 mRNA sequence
          Length = 1115

 Score =  159 bits (80), Expect = 8e-36
 Identities = 131/148 (88%)
 Strand = Plus / Plus

                                                                       
Query: 208 tccccacctgcgacgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaaca 267
           |||||| |||||||||||||||||| ||||||  ||| |||||||  |||||||| || |
Sbjct: 205 tccccatctgcgacgacttcgacggcttccaggcggccaccaaggatatggtgaagaata 264

                                                                       
Query: 268 agaaggggaccaccacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgact 327
           |||||||||| ||||||||  |||||||||||||||||||||||||||||||||| || |
Sbjct: 265 agaaggggacgaccacgcttgccttcatcttcgacaagggcgtcatcgtcgccgctgatt 324

                                       
Query: 328 cccgggccagcatgggcggctacatatc 355
           || |||||||||||||||| || |||||
Sbjct: 325 ccagggccagcatgggcggttatatatc 352



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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0041F13
          Length = 163230

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 306    ggcgtcatcgtcgccgccgactcccgggccagca 339
              |||||| || ||||||||||||||||| ||||||
Sbjct: 114282 ggcgtcgtcctcgccgccgactcccggaccagca 114249



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>dbj|AK104152.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C07, full
           insert sequence
          Length = 999

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 306 ggcgtcatcgtcgccgccgactcccgggccagca 339
           |||||| || ||||||||||||||||| ||||||
Sbjct: 218 ggcgtcgtcctcgccgccgactcccggaccagca 251



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>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence
          Length = 210051

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 284    gctctccttcatcttcgacaagggc 308
              |||||||||||||||| ||||||||
Sbjct: 171205 gctctccttcatcttctacaagggc 171181



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>gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, complete sequence
          Length = 210003

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   aaggggaccaccacgctctcc 290
             |||||||||||||||||||||
Sbjct: 13188 aaggggaccaccacgctctcc 13168



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>gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, complete sequence
          Length = 214994

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    aaggggaccaccacgctctcc 290
              |||||||||||||||||||||
Sbjct: 193548 aaggggaccaccacgctctcc 193528



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>gb|DQ214027.1| Taeniopygia guttata clone 0058P0034B02 ankyrin-like protein variant
           2-like mRNA, complete sequence
          Length = 1038

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 578 ggccagcatgggcggctaca 597



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>gb|DQ214026.1| Taeniopygia guttata clone 0058P0001C03 ankyrin-like protein variant
           2-like mRNA, complete sequence
          Length = 1038

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 578 ggccagcatgggcggctaca 597



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>gb|DQ214025.1| Taeniopygia guttata clone 0058P0045H05 ankyrin-like protein variant
           1-like mRNA, complete sequence
          Length = 1085

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 614 ggccagcatgggcggctaca 633



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>gb|DQ214024.1| Taeniopygia guttata clone 0058P0016G03 ankyrin-like protein variant
           1-like mRNA, complete sequence
          Length = 1085

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 614 ggccagcatgggcggctaca 633



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>gb|DQ214023.1| Taeniopygia guttata clone 0058P0052B06 ankyrin-like protein variant
           1-like mRNA, complete sequence
          Length = 1085

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 614 ggccagcatgggcggctaca 633



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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 306     ggcgtcatcgtcgccgccga 325
               ||||||||||||||||||||
Sbjct: 2726293 ggcgtcatcgtcgccgccga 2726312



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>ref|XM_859995.1| PREDICTED: Canis familiaris similar to regulatory factor
           X-associated ankyrin-containing protein isoform b,
           transcript variant 6 (LOC476662), mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 570 ggccagcatgggcggctaca 589



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>ref|XM_859974.1| PREDICTED: Canis familiaris similar to regulatory factor
           X-associated ankyrin-containing protein isoform b,
           transcript variant 5 (LOC476662), mRNA
          Length = 975

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 525 ggccagcatgggcggctaca 544



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>ref|XM_859956.1| PREDICTED: Canis familiaris similar to regulatory factor
           X-associated ankyrin-containing protein isoform b,
           transcript variant 4 (LOC476662), mRNA
          Length = 870

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 420 ggccagcatgggcggctaca 439



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>ref|XM_533866.2| PREDICTED: Canis familiaris similar to regulatory factor
           X-associated ankyrin-containing protein isoform b,
           transcript variant 1 (LOC476662), mRNA
          Length = 939

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggccagcatgggcggctaca 351
           ||||||||||||||||||||
Sbjct: 489 ggccagcatgggcggctaca 508



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>emb|BX063853.1|CNS09LFL Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC45DF07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1001

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 tccagaaggcgaccaaggcg 254
           ||||||||||||||||||||
Sbjct: 285 tccagaaggcgaccaaggcg 304



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>emb|BX060118.1|CNS09IJU Single read from an extremity of a full-length cDNA clone made from
            Anopheles gambiae total adult females. 5-PRIME end of
            clone FK0AAC40BE03 of strain 6-9 of Anopheles gambiae
            (African malaria mosquito)
          Length = 1047

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  tccagaaggcgaccaaggcg 254
            ||||||||||||||||||||
Sbjct: 1028 tccagaaggcgaccaaggcg 1047



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>emb|BX054899.1|CNS09EIV Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC33BB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 941

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 tccagaaggcgaccaaggcg 254
           ||||||||||||||||||||
Sbjct: 604 tccagaaggcgaccaaggcg 623



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>emb|BX046530.1|CNS0982E Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC20AH06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 947

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 tccagaaggcgaccaaggcg 254
           ||||||||||||||||||||
Sbjct: 664 tccagaaggcgaccaaggcg 645



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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    tgatccccaacctctccgcc 116
             ||||||||||||||||||||
Sbjct: 58084 tgatccccaacctctccgcc 58065



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 97       tgatccccaacctctccgcc 116
                ||||||||||||||||||||
Sbjct: 27789414 tgatccccaacctctccgcc 27789395



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>ref|XM_311198.2| Anopheles gambiae str. PEST ENSANGP00000019083 (ENSANGG00000016594),
            mRNA
          Length = 1481

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  tccagaaggcgaccaaggcg 254
            ||||||||||||||||||||
Sbjct: 1141 tccagaaggcgaccaaggcg 1160


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,013,008
Number of Sequences: 3902068
Number of extensions: 2013008
Number of successful extensions: 63140
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62995
Number of HSP's gapped (non-prelim): 145
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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