| Clone Name | bast59h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY736119.1| Triticum aestivum 20S proteasome beta 5 subunit mRNA, complete cds Length = 860 Score = 313 bits (158), Expect = 2e-82 Identities = 167/170 (98%) Strand = Plus / Plus Query: 193 agctcgccctcgagttccccacctgcgacgacttcgacgggttccagaaggcgaccaagg 252 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 107 agctcgccctcgagttccccacctgcaacgacttcgatgggttccagaaggcgaccaagg 166 Query: 253 cgatggtgaacaacaagaaggggaccaccacgctctccttcatcttcgacaagggcgtca 312 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 agatggtgaacaacaagaaggggaccaccacgctctccttcatcttcgacaagggcgtca 226 Query: 313 tcgtcgccgccgactcccgggccagcatgggcggctacatatcttcgcaa 362 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 tcgtcgccgccgactcccgggccagcatgggcggctacatatcttcgcaa 276 Score = 75.8 bits (38), Expect = 9e-11 Identities = 41/42 (97%) Strand = Plus / Plus Query: 87 gacgacgcgatgatccccaacctctccgccctcgagaaccac 128 |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1 gacgacgcgatgattcccaacctctccgccctcgagaaccac 42
>dbj|AK104520.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E06, full insert sequence Length = 1099 Score = 194 bits (98), Expect = 1e-46 Identities = 131/142 (92%) Strand = Plus / Plus Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280 ||||||||||||||||||||||| |||||||| |||| |||| |||||||||| || || Sbjct: 182 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 241 Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340 ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 242 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 301 Query: 341 gggcggctacatatcttcgcaa 362 |||||| ||||||||||||||| Sbjct: 302 gggcggatacatatcttcgcaa 323
>dbj|AK104361.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C04, full insert sequence Length = 1099 Score = 194 bits (98), Expect = 1e-46 Identities = 131/142 (92%) Strand = Plus / Plus Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280 ||||||||||||||||||||||| |||||||| |||| |||| |||||||||| || || Sbjct: 182 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 241 Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340 ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 242 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 301 Query: 341 gggcggctacatatcttcgcaa 362 |||||| ||||||||||||||| Sbjct: 302 gggcggatacatatcttcgcaa 323
>dbj|AK071652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E18, full insert sequence Length = 1217 Score = 194 bits (98), Expect = 1e-46 Identities = 131/142 (92%) Strand = Plus / Plus Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280 ||||||||||||||||||||||| |||||||| |||| |||| |||||||||| || || Sbjct: 187 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 246 Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340 ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 247 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 306 Query: 341 gggcggctacatatcttcgcaa 362 |||||| ||||||||||||||| Sbjct: 307 gggcggatacatatcttcgcaa 328
>dbj|AB026567.1| Oryza sativa (japonica cultivar-group) OsPBE1 mRNA for beta 5 subunit of 20S proteasome, complete cds Length = 1233 Score = 194 bits (98), Expect = 1e-46 Identities = 131/142 (92%) Strand = Plus / Plus Query: 221 cgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccac 280 ||||||||||||||||||||||| |||||||| |||| |||| |||||||||| || || Sbjct: 181 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 240 Query: 281 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcat 340 ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 241 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 300 Query: 341 gggcggctacatatcttcgcaa 362 |||||| ||||||||||||||| Sbjct: 301 gggcggatacatatcttcgcaa 322
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 170 bits (86), Expect = 2e-39 Identities = 119/130 (91%) Strand = Plus / Minus Query: 225 ttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccaccacg 284 ||||||||||||||||||| |||||||| |||| |||| |||||||||| || |||||| Sbjct: 2772703 ttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgaccacg 2772644 Query: 285 ctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcatgggc 344 ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2772643 ctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcatgggc 2772584 Query: 345 ggctacatat 354 || ||||||| Sbjct: 2772583 ggatacatat 2772574 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 306 ggcgtcatcgtcgccgccgactcccgggccagca 339 |||||| || ||||||||||||||||| |||||| Sbjct: 2093420 ggcgtcgtcctcgccgccgactcccggaccagca 2093387
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 170 bits (86), Expect = 2e-39 Identities = 119/130 (91%) Strand = Plus / Minus Query: 225 ttcgacgggttccagaaggcgaccaaggcgatggtgaacaacaagaaggggaccaccacg 284 ||||||||||||||||||| |||||||| |||| |||| |||||||||| || |||||| Sbjct: 16184 ttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgaccacg 16125 Query: 285 ctctccttcatcttcgacaagggcgtcatcgtcgccgccgactcccgggccagcatgggc 344 ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 16124 ctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcatgggc 16065 Query: 345 ggctacatat 354 || ||||||| Sbjct: 16064 ggatacatat 16055
>gb|BT016601.1| Zea mays clone Contig434 mRNA sequence Length = 1072 Score = 159 bits (80), Expect = 8e-36 Identities = 131/148 (88%) Strand = Plus / Plus Query: 208 tccccacctgcgacgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaaca 267 |||||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || | Sbjct: 180 tccccatctgcgacgacttcgacggcttccaggcggccaccaaggatatggtgaagaata 239 Query: 268 agaaggggaccaccacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgact 327 |||||||||| |||||||| |||||||||||||||||||||||||||||||||| || | Sbjct: 240 agaaggggacgaccacgcttgccttcatcttcgacaagggcgtcatcgtcgccgctgatt 299 Query: 328 cccgggccagcatgggcggctacatatc 355 || |||||||||||||||| || ||||| Sbjct: 300 ccagggccagcatgggcggttatatatc 327
>gb|AY103704.1| Zea mays PCO130904 mRNA sequence Length = 1115 Score = 159 bits (80), Expect = 8e-36 Identities = 131/148 (88%) Strand = Plus / Plus Query: 208 tccccacctgcgacgacttcgacgggttccagaaggcgaccaaggcgatggtgaacaaca 267 |||||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || | Sbjct: 205 tccccatctgcgacgacttcgacggcttccaggcggccaccaaggatatggtgaagaata 264 Query: 268 agaaggggaccaccacgctctccttcatcttcgacaagggcgtcatcgtcgccgccgact 327 |||||||||| |||||||| |||||||||||||||||||||||||||||||||| || | Sbjct: 265 agaaggggacgaccacgcttgccttcatcttcgacaagggcgtcatcgtcgccgctgatt 324 Query: 328 cccgggccagcatgggcggctacatatc 355 || |||||||||||||||| || ||||| Sbjct: 325 ccagggccagcatgggcggttatatatc 352
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 306 ggcgtcatcgtcgccgccgactcccgggccagca 339 |||||| || ||||||||||||||||| |||||| Sbjct: 114282 ggcgtcgtcctcgccgccgactcccggaccagca 114249
>dbj|AK104152.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C07, full insert sequence Length = 999 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 306 ggcgtcatcgtcgccgccgactcccgggccagca 339 |||||| || ||||||||||||||||| |||||| Sbjct: 218 ggcgtcgtcctcgccgccgactcccggaccagca 251
>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence Length = 210051 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 284 gctctccttcatcttcgacaagggc 308 |||||||||||||||| |||||||| Sbjct: 171205 gctctccttcatcttctacaagggc 171181
>gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, complete sequence Length = 210003 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 aaggggaccaccacgctctcc 290 ||||||||||||||||||||| Sbjct: 13188 aaggggaccaccacgctctcc 13168
>gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, complete sequence Length = 214994 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 aaggggaccaccacgctctcc 290 ||||||||||||||||||||| Sbjct: 193548 aaggggaccaccacgctctcc 193528
>gb|DQ214027.1| Taeniopygia guttata clone 0058P0034B02 ankyrin-like protein variant 2-like mRNA, complete sequence Length = 1038 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 578 ggccagcatgggcggctaca 597
>gb|DQ214026.1| Taeniopygia guttata clone 0058P0001C03 ankyrin-like protein variant 2-like mRNA, complete sequence Length = 1038 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 578 ggccagcatgggcggctaca 597
>gb|DQ214025.1| Taeniopygia guttata clone 0058P0045H05 ankyrin-like protein variant 1-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 614 ggccagcatgggcggctaca 633
>gb|DQ214024.1| Taeniopygia guttata clone 0058P0016G03 ankyrin-like protein variant 1-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 614 ggccagcatgggcggctaca 633
>gb|DQ214023.1| Taeniopygia guttata clone 0058P0052B06 ankyrin-like protein variant 1-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 614 ggccagcatgggcggctaca 633
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggcgtcatcgtcgccgccga 325 |||||||||||||||||||| Sbjct: 2726293 ggcgtcatcgtcgccgccga 2726312
>ref|XM_859995.1| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 6 (LOC476662), mRNA Length = 1020 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 570 ggccagcatgggcggctaca 589
>ref|XM_859974.1| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 5 (LOC476662), mRNA Length = 975 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 525 ggccagcatgggcggctaca 544
>ref|XM_859956.1| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 4 (LOC476662), mRNA Length = 870 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 420 ggccagcatgggcggctaca 439
>ref|XM_533866.2| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 1 (LOC476662), mRNA Length = 939 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggccagcatgggcggctaca 351 |||||||||||||||||||| Sbjct: 489 ggccagcatgggcggctaca 508
>emb|BX063853.1|CNS09LFL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC45DF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1001 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tccagaaggcgaccaaggcg 254 |||||||||||||||||||| Sbjct: 285 tccagaaggcgaccaaggcg 304
>emb|BX060118.1|CNS09IJU Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC40BE03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1047 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tccagaaggcgaccaaggcg 254 |||||||||||||||||||| Sbjct: 1028 tccagaaggcgaccaaggcg 1047
>emb|BX054899.1|CNS09EIV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC33BB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 941 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tccagaaggcgaccaaggcg 254 |||||||||||||||||||| Sbjct: 604 tccagaaggcgaccaaggcg 623
>emb|BX046530.1|CNS0982E Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC20AH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 947 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tccagaaggcgaccaaggcg 254 |||||||||||||||||||| Sbjct: 664 tccagaaggcgaccaaggcg 645
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tgatccccaacctctccgcc 116 |||||||||||||||||||| Sbjct: 58084 tgatccccaacctctccgcc 58065
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tgatccccaacctctccgcc 116 |||||||||||||||||||| Sbjct: 27789414 tgatccccaacctctccgcc 27789395
>ref|XM_311198.2| Anopheles gambiae str. PEST ENSANGP00000019083 (ENSANGG00000016594), mRNA Length = 1481 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tccagaaggcgaccaaggcg 254 |||||||||||||||||||| Sbjct: 1141 tccagaaggcgaccaaggcg 1160 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,013,008 Number of Sequences: 3902068 Number of extensions: 2013008 Number of successful extensions: 63140 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62995 Number of HSP's gapped (non-prelim): 145 length of query: 362 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 340 effective length of database: 17,147,199,772 effective search space: 5830047922480 effective search space used: 5830047922480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)