ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59h06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence Length = 160155 Score = 317 bits (160), Expect = 2e-83 Identities = 286/327 (87%), Gaps = 6/327 (1%) Strand = Plus / Minus Query: 84 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 137 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 93356 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 93297 Query: 138 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 197 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 93296 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 93237 Query: 198 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 257 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 93236 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 93177 Query: 258 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 317 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 93176 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 93117 Query: 318 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 377 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 93116 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 93057 Query: 378 tcgacgccttctgcgcgcgcctngacg 404 |||||||||||||||| ||||| |||| Sbjct: 93056 tcgacgccttctgcgcccgcctcgacg 93030
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 317 bits (160), Expect = 2e-83 Identities = 286/327 (87%), Gaps = 6/327 (1%) Strand = Plus / Minus Query: 84 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 137 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 23772444 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 23772385 Query: 138 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 197 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 23772384 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 23772325 Query: 198 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 257 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 23772324 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 23772265 Query: 258 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 317 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 23772264 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 23772205 Query: 318 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 377 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 23772204 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 23772145 Query: 378 tcgacgccttctgcgcgcgcctngacg 404 |||||||||||||||| ||||| |||| Sbjct: 23772144 tcgacgccttctgcgcccgcctcgacg 23772118
>dbj|AK121520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028J23, full insert sequence Length = 1624 Score = 317 bits (160), Expect = 2e-83 Identities = 286/327 (87%), Gaps = 6/327 (1%) Strand = Plus / Plus Query: 84 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 137 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 421 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 480 Query: 138 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 197 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 481 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 540 Query: 198 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 257 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 541 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 600 Query: 258 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 317 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 601 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 660 Query: 318 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 377 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 661 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 720 Query: 378 tcgacgccttctgcgcgcgcctngacg 404 |||||||||||||||| ||||| |||| Sbjct: 721 tcgacgccttctgcgcccgcctcgacg 747
>dbj|AK105400.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C10, full insert sequence Length = 1608 Score = 317 bits (160), Expect = 2e-83 Identities = 286/327 (87%), Gaps = 6/327 (1%) Strand = Plus / Plus Query: 84 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 137 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 419 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 478 Query: 138 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 197 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 479 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 538 Query: 198 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 257 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 539 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 598 Query: 258 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 317 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 599 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 658 Query: 318 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 377 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 659 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 718 Query: 378 tcgacgccttctgcgcgcgcctngacg 404 |||||||||||||||| ||||| |||| Sbjct: 719 tcgacgccttctgcgcccgcctcgacg 745
>ref|XM_472862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 903 Score = 313 bits (158), Expect = 2e-82 Identities = 284/325 (87%), Gaps = 6/325 (1%) Strand = Plus / Plus Query: 86 atggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggaggac 139 |||||||||||||||| ||||||||||||||| ||||||| |||| ||||||| Sbjct: 1 atggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggaggag 60 Query: 140 tcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacggc 199 ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||||| Sbjct: 61 acggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacggc 120 Query: 200 gtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcccc 259 ||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct: 121 gtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcccc 180 Query: 260 gacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgcccagc 319 ||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| || Sbjct: 181 gacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccggc 240 Query: 320 cccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacgtc 379 | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 241 acagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacgtc 300 Query: 380 gacgccttctgcgcgcgcctngacg 404 |||||||||||||| ||||| |||| Sbjct: 301 gacgccttctgcgcccgcctcgacg 325
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 212 bits (107), Expect = 7e-52 Identities = 253/299 (84%), Gaps = 2/299 (0%) Strand = Plus / Minus Query: 93 agatcccggtgatcgacctgcggctcgccggcgcacggccggaggactcggcgcggctgc 152 ||||||||||||||||||||||||||||||||| ||| | || | |||||||||| Sbjct: 22929896 agatcccggtgatcgacctgcggctcgccggcgaggcgcccggcgaggccgcgcggctgc 22929837 Query: 153 gggacgcgtgcg-agcgcttgggctgcttccgcgtgtccggccacggcgtgcccgcggcg 211 | |||||| ||| |||| ||||||||||||||||||| |||||||||||||| || | Sbjct: 22929836 gcgacgcg-gcgcggcgcctgggctgcttccgcgtgtcgggccacggcgtgccgcgggag 22929778 Query: 212 ctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctccccgacgaagccaag 271 |||||||| | |||| |||| |||||||||| || ||||||||||||| ||| |||||| Sbjct: 22929777 ctccaggccggcatgagggccgccgtgcgcgccctgttcgacctccccggcgacgccaag 22929718 Query: 272 cgccgcaacacggacatcatcgccggcagcggctacgtcgcgcccagccccgccaacccg 331 ||||||||| | ||| ||||| ||||||||||||| | ||||| ||| ||||||||||| Sbjct: 22929717 cgccgcaacgccgacgtcatccacggcagcggctacatggcgccgagcgccgccaacccg 22929658 Query: 332 ctctacgaggccttcggcctcctggacgccgccgtccccgccgacgtcgacgccttctg 390 || |||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 22929657 ctgtacgaggcgttcggcctctacgacgccgcgtcccccgccgacgtcgacgccttctg 22929599 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cggtgatagacctgcggctcgccg 50 ||||||| |||||||||||||||| Sbjct: 22929890 cggtgatcgacctgcggctcgccg 22929867
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 212 bits (107), Expect = 7e-52 Identities = 253/299 (84%), Gaps = 2/299 (0%) Strand = Plus / Minus Query: 93 agatcccggtgatcgacctgcggctcgccggcgcacggccggaggactcggcgcggctgc 152 ||||||||||||||||||||||||||||||||| ||| | || | |||||||||| Sbjct: 49698 agatcccggtgatcgacctgcggctcgccggcgaggcgcccggcgaggccgcgcggctgc 49639 Query: 153 gggacgcgtgcg-agcgcttgggctgcttccgcgtgtccggccacggcgtgcccgcggcg 211 | |||||| ||| |||| ||||||||||||||||||| |||||||||||||| || | Sbjct: 49638 gcgacgcg-gcgcggcgcctgggctgcttccgcgtgtcgggccacggcgtgccgcgggag 49580 Query: 212 ctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctccccgacgaagccaag 271 |||||||| | |||| |||| |||||||||| || ||||||||||||| ||| |||||| Sbjct: 49579 ctccaggccggcatgagggccgccgtgcgcgccctgttcgacctccccggcgacgccaag 49520 Query: 272 cgccgcaacacggacatcatcgccggcagcggctacgtcgcgcccagccccgccaacccg 331 ||||||||| | ||| ||||| ||||||||||||| | ||||| ||| ||||||||||| Sbjct: 49519 cgccgcaacgccgacgtcatccacggcagcggctacatggcgccgagcgccgccaacccg 49460 Query: 332 ctctacgaggccttcggcctcctggacgccgccgtccccgccgacgtcgacgccttctg 390 || |||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 49459 ctgtacgaggcgttcggcctctacgacgccgcgtcccccgccgacgtcgacgccttctg 49401 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cggtgatagacctgcggctcgccg 50 ||||||| |||||||||||||||| Sbjct: 49692 cggtgatcgacctgcggctcgccg 49669
>ref|XM_475929.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 243 cgctcttcgacctccccgacgaagccaagcgccgcaac 280 ||||||||| ||||||| ||| ||||||||||||||| Sbjct: 200 cgctcttcgcgctccccgtcgacgccaagcgccgcaac 237
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 243 cgctcttcgacctccccgacgaagccaagcgccgcaac 280 ||||||||| ||||||| ||| ||||||||||||||| Sbjct: 15691 cgctcttcgcgctccccgtcgacgccaagcgccgcaac 15654
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 243 cgctcttcgacctccccgacgaagccaagcgccgcaac 280 ||||||||| ||||||| ||| ||||||||||||||| Sbjct: 28487998 cgctcttcgcgctccccgtcgacgccaagcgccgcaac 28487961 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||||| ||||||||| ||||| Sbjct: 19640525 gacgccgccgtcgccgccgacgccgacg 19640552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 ccaacccgctctacgaggccttcg 347 |||||||||||||| ||||||||| Sbjct: 11321263 ccaacccgctctacaaggccttcg 11321286
>dbj|AB097412.1| Triticum aestivum Wcor18 mRNA for cold regulated protein, complete cds Length = 784 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 349 cctcctggacgccgccgtccccgccg 374 ||||||||||||||||||| |||||| Sbjct: 389 cctcctggacgccgccgtcgccgccg 364
>emb|AJ421477.1|MDI421477 Methylobacterium dichloromethanicum mtdB gene, mchA gene, fae gene for Hypothetical protein, fae gene and ORF1-5, strain DM4 (DSM6343) Length = 7038 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gatcccggtgatcgacctgcg 114 ||||||||||||||||||||| Sbjct: 6646 gatcccggtgatcgacctgcg 6626
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 370 cgccgacgtcgacgccttctgcgcgcgcc 398 |||| ||||||||||| |||||||||||| Sbjct: 1808349 cgcccacgtcgacgccgtctgcgcgcgcc 1808321
>gb|AF032114.2| Methylobacterium extorquens mxbM gene, complete sequence; response regulator, sensor kinase (mxbD), formyltransferase/hydrolase complex Fhc subunit C (fhcC), formyltransferase/hydrolase complex Fhc subunit D (fhcD), formyltransferase/hydrolase complex Fhc subunit A (fhcA), formyltransferase/hydrolase complex Fhc subunit B (fhcB), methylene tetrahydromethanopterin dehydrogenase, methylene tetrahydromethanopterin cyclohydrolase (mch), and formaldehyde-activating enzyme (fae) genes, complete cds; and unknown genes Length = 16541 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gatcccggtgatcgacctgcg 114 ||||||||||||||||||||| Sbjct: 15468 gatcccggtgatcgacctgcg 15448
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tccccgccgacgtcgacgcct 386 ||||||||||||||||||||| Sbjct: 558930 tccccgccgacgtcgacgcct 558950
>emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosynthesis gene cluster, strain DSM 43868 Length = 47238 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 tgtccggccacggcgtgcccg 206 ||||||||||||||||||||| Sbjct: 13608 tgtccggccacggcgtgcccg 13628
>gb|AY549198.1| Streptomyces tubercidicus oxidoreductase (redLA1) gene, partial cds; and cytochrome P450 monooxygenase CYP107L3 (cypLA), O-methyltransferase (metLA1), O-methyltransferase (metLA2), and oxidoreductase (redLA2) genes, complete cds Length = 5427 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gctcttcgacctccccgacg 263 |||||||||||||||||||| Sbjct: 2994 gctcttcgacctccccgacg 3013
>ref|XM_463586.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||| | ||||||||||||||| Sbjct: 28 gacgccgccgccgccgccgacgtcgacg 55
>gb|BT018872.1| Zea mays clone EL01N0563D01.d mRNA sequence Length = 1668 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 173 ggctgcttccgcgtgtccggccacggcg 200 ||||||||||||| ||||||| |||||| Sbjct: 232 ggctgcttccgcgcgtccggcgacggcg 259
>gb|AC149302.1| Solanum demissum chromosome 11 clone PGEC400L14 map MAP_LOC, complete sequence Length = 136874 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cgcttgggctgcttccgcgt 186 |||||||||||||||||||| Sbjct: 35822 cgcttgggctgcttccgcgt 35803
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||||| ||||||||| ||||| Sbjct: 100424 gacgccgccgtcgccgccgacgccgacg 100451
>gb|AC145273.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0055E23, complete sequence Length = 156572 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 ccaacccgctctacgaggccttcg 347 |||||||||||||| ||||||||| Sbjct: 46540 ccaacccgctctacaaggccttcg 46563
>gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1657_H11, complete sequence Length = 98103 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||||| ||||||||| ||||| Sbjct: 5534 gacgccgccgtcgccgccgacgccgacg 5561
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 atagacctgcggctcgccgt 51 |||||||||||||||||||| Sbjct: 66383 atagacctgcggctcgccgt 66402
>gb|AY337067.1| Uncultured sulfate-reducing bacterium clone M300255 dissimilatory sulfite reductase subunits alpha and beta (dsrAB) gene, partial sequence Length = 1304 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 21 ccaggcggagatgaaggcct 40
>gb|AY337054.1| Uncultured sulfate-reducing bacterium clone M306285 dissimilatory sulfite reductase subunits alpha and beta (dsrAB) gene, partial sequence Length = 1288 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 21 ccaggcggagatgaaggcct 40
>gb|DQ112205.1| Uncultured sulfate-reducing bacterium clone VHS040 dissimilatory sulfite reductase alpha subunit (dsrA) and dissimilatory sulfite reductase bata subunit (dsrB) genes, partial cds Length = 1838 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 552 ccaggcggagatgaaggcct 571
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ctggacgccgccgtccccgc 372 |||||||||||||||||||| Sbjct: 4015680 ctggacgccgccgtccccgc 4015699 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ctggacgccgccgtccccgc 372 |||||||||||||||||||| Sbjct: 274059 ctggacgccgccgtccccgc 274040
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 cgtccccgccgacgtcgacg 383 |||||||||||||||||||| Sbjct: 153570 cgtccccgccgacgtcgacg 153551
>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ gene, spiK gene, spiL gene and spiZ gene Length = 48000 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 cgtccccgccgacgtcgacg 383 |||||||||||||||||||| Sbjct: 8531 cgtccccgccgacgtcgacg 8550
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gacgccttctgcgcgcgcct 399 |||||||||||||||||||| Sbjct: 4081419 gacgccttctgcgcgcgcct 4081438
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||| | ||||||||||||||| Sbjct: 92087 gacgccgccgccgccgccgacgtcgacg 92114
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gatcgacctgcggctcgccg 122 |||||||||||||||||||| Sbjct: 2716383 gatcgacctgcggctcgccg 2716402
>gb|AE011939.1| Xanthomonas axonopodis pv. citri str. 306, section 317 of 469 of the complete genome Length = 11203 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 atcccggtgatcgacctgcg 114 |||||||||||||||||||| Sbjct: 11027 atcccggtgatcgacctgcg 11008
>gb|AY885438.1| Uncultured sulfate-reducing bacterium clone FW-300-258 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1276 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 18 ccaggcggagatgaaggcct 37
>gb|AY885436.1| Uncultured sulfate-reducing bacterium clone FW-005-008 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1284 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 24 ccaggcggagatgaaggcct 43
>gb|AY885435.1| Uncultured sulfate-reducing bacterium clone FW-015-071 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1274 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 21 ccaggcggagatgaaggcct 40
>gb|AY885434.1| Uncultured sulfate-reducing bacterium clone FW-005-220 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1287 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 30 ccaggcggagatgaaggcct 49
>gb|AY885432.1| Uncultured sulfate-reducing bacterium clone FW-015-255 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccaggcggagatgaaggcct 233 |||||||||||||||||||| Sbjct: 36 ccaggcggagatgaaggcct 55
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||| | ||||||||||||||| Sbjct: 39537645 gacgccgccgccgccgccgacgtcgacg 39537672
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||| | ||||||||||||||| Sbjct: 18601 gacgccgccgccgccgccgacgtcgacg 18628
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ggactcggcgcggctgcggg 155 |||||||||||||||||||| Sbjct: 7228191 ggactcggcgcggctgcggg 7228172
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cggccacggcgtgcccgcgg 209 |||||||||||||||||||| Sbjct: 4036281 cggccacggcgtgcccgcgg 4036300 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 atcccggtgatcgacctgcggctc 118 |||||||| ||||||||||||||| Sbjct: 1582736 atcccggtcatcgacctgcggctc 1582713 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 355 ggacgccgccgtccccgccgacgtcgac 382 ||||||||||| ||||||||||| |||| Sbjct: 819953 ggacgccgccgcccccgccgacgacgac 819926
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||| | ||||||||||||||| Sbjct: 112659 gacgccgccgccgccgccgacgtcgacg 112686
>dbj|AB112586.1| Streptomyces sp. WA46 genes for salicylate degradation related proteins, complete cds Length = 27521 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 aggactcggcgcggctgcgggacg 158 ||||| |||||||||||||||||| Sbjct: 8854 aggacccggcgcggctgcgggacg 8877
>dbj|AK067269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099J01, full insert sequence Length = 1446 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 gacgccgccgtccccgccgacgtcgacg 383 |||||||||| | ||||||||||||||| Sbjct: 152 gacgccgccgccgccgccgacgtcgacg 179
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gacgccttctgcgcgcgcct 399 |||||||||||||||||||| Sbjct: 3331371 gacgccttctgcgcgcgcct 3331352 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,108,674 Number of Sequences: 3902068 Number of extensions: 2108674 Number of successful extensions: 52618 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50746 Number of HSP's gapped (non-prelim): 1872 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
