ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB088409.1| Triticum aestivum 1-FFT-A mRNA for fructan:fruct... 52 2e-04
2dbj|AB088410.1| Triticum aestivum 1-FFT-B mRNA for fructan:fruct... 44 0.044
3emb|AJ567377.2|HVU567377 Hordeum vulgare partial mRNA for sucros... 42 0.18

>dbj|AB088409.1| Triticum aestivum 1-FFT-A mRNA for fructan:fructan
           1-fructosyltransferase, complete cds
          Length = 2304

 Score = 52.0 bits (26), Expect = 2e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 10  tgccctacgcctaccagcagctgccctccttatccgtcgacgccaatggccagcagga 67
           |||||||||| ||| ||| |||||||||||  |||| ||||||||| |||||| ||||
Sbjct: 128 tgccctacgcgtacgagccgctgccctcctcctccgccgacgccaacggccaggagga 185



to top

>dbj|AB088410.1| Triticum aestivum 1-FFT-B mRNA for fructan:fructan
           1-fructosyltransferase, complete cds
          Length = 2251

 Score = 44.1 bits (22), Expect = 0.044
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 10  tgccctacgcctaccagcagctgccctccttatccgtcgacgccaatggccagcagga 67
           |||||||||| ||| ||| |||||||||||  || | ||||||||| |||||| ||||
Sbjct: 101 tgccctacgcgtacgagccgctgccctcctcctctgccgacgccaacggccaggagga 158



to top

>emb|AJ567377.2|HVU567377 Hordeum vulgare partial mRNA for
          sucrose-sucrose-1-fructosyltransferase (1-sst gene)
          Length = 2157

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 42 tccgtcgacgccaatggccagcaggagca 70
          |||| |||||||||||||||| |||||||
Sbjct: 6  tccgccgacgccaatggccaggaggagca 34


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 469,865
Number of Sequences: 3902068
Number of extensions: 469865
Number of successful extensions: 35499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35496
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top