Clone Information

BLAST Search Result

Clone Name	bast59h03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Conta...	33	0.22
2	PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2....	33	0.22
3	CORA_HBVW2 (P03148) Core antigen	32	0.38
4	COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Conta...	31	0.85
5	ZN592_HUMAN (Q92610) Zinc finger protein 592	31	0.85
6	CORA_HBVW9 (P17099) Core antigen	30	1.1
7	CORA_HBVAW (P03149) Core antigen	30	1.1
8	AGRN_HUMAN (O00468) Agrin precursor	30	1.5
9	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	30	1.5
10	GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outg...	30	1.5
11	CSPG5_HUMAN (O95196) Chondroitin sulfate proteoglycan 5 precurso...	30	1.9
12	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	30	1.9
13	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	30	1.9
14	CD2_MACFA (Q6SZ61) T-cell surface antigen CD2 precursor	30	1.9
15	CORA_HBVYW (P03146) Core antigen	30	1.9
16	CORA_HBVWO (P17392) Core antigen	30	1.9
17	CORA_HBVWJ (P17391) Core antigen	30	1.9
18	CORA_HBVWI (P69707) Core antigen	30	1.9
19	CORA_HBVDR (P69708) Core antigen	30	1.9
20	CORA_HBVD4 (P69706) Core antigen	30	1.9
21	CORA_HBVAY (P03147) Core antigen	30	1.9
22	CORA_HBVWS (P29178) Core antigen	29	2.5
23	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	29	3.2
24	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	29	3.2
25	CORA_HBVIA (P24023) Core antigen	29	3.2
26	CT174_HUMAN (Q5JPB2) Protein C20orf174	28	4.2
27	INHA_CHICK (P43031) Inhibin alpha chain precursor	28	4.2
28	NOXO1_HUMAN (Q8NFA2) NADPH oxidase organizer 1 (Nox organizer 1)...	28	4.2
29	IAA6_ORYSA (Q8LQ74) Auxin-responsive protein IAA6 (Indoleacetic ...	28	5.5
30	SIM1_HUMAN (P81133) Single-minded homolog 1	28	5.5
31	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	28	5.5
32	CSPG5_MOUSE (Q71M36) Chondroitin sulfate proteoglycan 5 precurso...	28	7.2
33	KIFC3_HUMAN (Q9BVG8) Kinesin-like protein KIFC3	28	7.2
34	RS4_METTH (O26142) 30S ribosomal protein S4P	28	7.2
35	DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrol...	28	7.2
36	NEF_HV1Y2 (P35959) Nef protein (Negative factor) (F-protein) (3'...	28	7.2
37	CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding...	28	7.2
38	HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein...	28	7.2
39	CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End...	27	9.4
40	RED1_HUMAN (P78563) Double-stranded RNA-specific editase 1 (EC 3...	27	9.4
41	PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)	27	9.4
42	PTP1_ENCHE (O76273) Major polar tube protein precursor (Major PT...	27	9.4
43	ITB3_MOUSE (O54890) Integrin beta-3 precursor (Platelet membrane...	27	9.4

>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV)]
          Length = 1367

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
 Frame = +1

Query: 139  PLALATSTKHQPALHGHPAPLFQSSPETH-------GRQGRPFL-------GWRGRPAPG 276
            PL +    K +P +HG P P+    P  H       GR GRP L       G RG   PG
Sbjct: 858  PLEMMKGRKGEPGIHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVTLPG 917

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>PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)|
           (p21-activated kinase 4) (PAK-4)
          Length = 593

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 277 APVPACRASQETGVLADRASQGKTGRAEQGGRARLAG 167
           +P P  RA QE G+L +RA+  +    + G RAR  G
Sbjct: 104 SPPPPARAHQENGMLEERAAPARMAPDKAGSRARATG 140

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>CORA_HBVW2 (P03148) Core antigen|
          Length = 185

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETH--GRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREM 345
           PA     AP+  + PET    R+ R     R  P+P R PS S RR+      R++SRE 
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRDRGRSPRRRTPSPRRRPSQSPRRR------RSQSRES 183

Query: 346 SC 351
            C
Sbjct: 184 QC 185

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>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
 Frame = +1

Query: 139  PLALATSTKHQPALHGHPAPLFQSSPETH-------GRQGRPFL----GWRGRP 267
            PL      K +P +HG P P+    P  H       GR GRP L    G +G P
Sbjct: 873  PLERLMGKKGEPGMHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGTKGDP 926

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>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 135 PAPSSSYQYKAPASLARPPCSALPVFP*DARSARTPVSWL 254
           PAPSSS ++   +  A PP  ALP++P   R  R  +  L
Sbjct: 675 PAPSSSPKHGLTSGSASPPPPALPLYPDPVRLIRYSIKCL 714

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>CORA_HBVW9 (P17099) Core antigen|
          Length = 214

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     RGR    R PS   RR  +    R++SRE  C
Sbjct: 159 PAYRPPNAPILSTLPETTVVRRRD----RGRSPRRRTPSPRRRRSQSPRRRRSQSRESQC 214

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>CORA_HBVAW (P03149) Core antigen|
          Length = 185

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     RGR    R PS   RR  +    R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRD----RGRSPRRRTPSPRRRRSQSPRRRRSQSRESQC 185

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>AGRN_HUMAN (O00468) Agrin precursor|
          Length = 2045

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 326  RAPVTVSCRLEEELGSRPGAGLPRQPRNGRPCRPCVSG---EDWKSGAGWPC 180
            R P T   R+    G RP A  P+QP      +PC  G   +DW  G G+ C
Sbjct: 1309 RPPTTAPSRVP---GRRPPA--PQQPPKPCDSQPCFHGGTCQDWALGGGFTC 1355

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 196 PLFQSSPETHG--RQGRPFLGWRGRPAPGREPSSSS 297
           P  Q++P T G  RQ RP  G  G P   R P+S S
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS 553

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>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 154 TSTKHQPALHGHPAPLFQSSPE--THGRQGRPFLGWRGRPAPGREPSSSSRRQLTVT-GA 324
           +S K  P   G   P+    PE  + G+  R  +G  G  +PG+E   SSRR+  ++ G+
Sbjct: 412 SSGKVDPVSLGKMDPMCSGKPELLSPGQAERVSVGKAGTVSPGKEDPVSSRREDPISAGS 471

Query: 325 RARSRE 342
           R  S E
Sbjct: 472 RKTSSE 477

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>CSPG5_HUMAN (O95196) Chondroitin sulfate proteoglycan 5 precursor (Neuroglycan|
           C) (Acidic leucine-rich EGF-like domain-containing brain
           protein)
          Length = 566

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 296 EEELGSRPGAGLPRQPRNGRPCRPCVSGEDWKSGAGWPCKAGW 168
           +  LGS PG+ +  +PR G P R   S E+     G  C++G+
Sbjct: 326 QHTLGSVPGSSIALRPRPGEPGRDLASSEN-----GTECRSGF 363

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 196 PLFQSSP--ETHGRQGRPFLGWRGRPAPGREPSSSS 297
           P+ Q+ P  +  GRQ RP  G  G P   R P+S S
Sbjct: 246 PVSQAQPLSQAQGRQSRPVAGGPGAPPAARPPASPS 281

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFL-GWRGRP-APGREPSSSSRRQLTVT 318
           P   G P P   + P  +G QG P L G +G P APG    +  R +L+V+
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651

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>CD2_MACFA (Q6SZ61) T-cell surface antigen CD2 precursor|
          Length = 351

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 118 NSARSHRPLALATSTKHQPALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSS 297
           + A SHRPL      +HQP     PAP   S  + H ++G P    R +P P +  + +S
Sbjct: 290 SQAPSHRPLPPGHRVQHQPQKR-PPAP---SGTQVHQQKGPPLPRPRVQPKPPQGAAENS 345

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>CORA_HBVYW (P03146) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVWO (P17392) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVWJ (P17391) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVWI (P69707) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVDR (P69708) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVD4 (P69706) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVAY (P03147) Core antigen|
          Length = 183

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 130 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRR------RSQSRESQC 183

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>CORA_HBVWS (P29178) Core antigen|
          Length = 195

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET   + R     R  P+P R  S S RR+      R++SRE  C
Sbjct: 142 PAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSPSPRRR------RSQSRESQC 195

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 205 QSSPETHG--RQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMS 348
           Q++P T G  RQ RP  G  G P   R P+S S ++    GA   +R+ S
Sbjct: 521 QATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQR--QAGAPQATRQAS 568

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 196 PLFQSSPETHG--RQGRPFLGWRGRPAPGREPSSSS 297
           P  Q++P T G  RQ RP  G  G P   R P+S S
Sbjct: 518 PASQATPMTQGQGRQSRPVAGGPGAPPATRPPASPS 553

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>CORA_HBVIA (P24023) Core antigen|
          Length = 211

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSREMSC 351
           PA     AP+  + PET        +  RGR    R PS   RR  +    R +SRE  C
Sbjct: 158 PAYRPPNAPILSTLPET------TVVRRRGRSPRRRTPSPRRRRSQSPRRRRTQSRESQC 211

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>CT174_HUMAN (Q5JPB2) Protein C20orf174|
          Length = 1082

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPG 276
           PAL G  +P   S        GR  LGW+  PAPG
Sbjct: 137 PALGGRDSPCSGSRSPLVSPNGRLELGWQMPPAPG 171

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>INHA_CHICK (P43031) Inhibin alpha chain precursor|
          Length = 329

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 129 FTPAPSSSYQYKAPASLARPPCSALPVFP*DARSARTPVSWLARQAGTGA*TEL 290
           F   PS++  + APA L   P   +PV    A ++RTP  W     G  A  +L
Sbjct: 126 FYSGPSAAPNHSAPAVLTLSPQGRVPVV---ATASRTPEHWTVFDFGPDALPQL 176

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>NOXO1_HUMAN (Q8NFA2) NADPH oxidase organizer 1 (Nox organizer 1)|
           (Nox-organizing protein 1) (NADPH oxidase regulatory
           protein)
          Length = 376

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 190 PAPLFQSSPETHGRQGRPFLGWRG-RPAPGREPSSSSRRQLTV-TGARARSREMS 348
           PAP  + +    GR+G P LG  G +    R   SS   +L+V  GAR R  E S
Sbjct: 216 PAPYLEEAAPGQGREGGPSLGSSGPQFCASRAYESSRADELSVPAGARVRVLETS 270

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>IAA6_ORYSA (Q8LQ74) Auxin-responsive protein IAA6 (Indoleacetic acid-induced|
           protein 6)
          Length = 335

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGR-QGRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSRE 342
           P  HG PA   ++ P+T GR    P +GW         P  S RR L  + +   S E
Sbjct: 151 PPPHGAPATPARNRPQTQGRGAAAPVVGW--------PPIRSFRRNLASSSSSKHSPE 200

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>SIM1_HUMAN (P81133) Single-minded homolog 1|
          Length = 766

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = +1

Query: 235 GRPFLGWRGRPAPGREPSSSSRRQLTVTGARARSRE 342
           GR FLG    P  GREP   SR  L +T A   SRE
Sbjct: 475 GRYFLG---TPQAGREPWWGSRAALPLTKASPESRE 507

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 205 QSSPETHG--RQGRPFLGWRGRPAPGREPSSSS 297
           Q++P T G  RQ RP  G  G P   R P+S S
Sbjct: 519 QATPMTQGQGRQSRPVAGGPGAPPAARPPASPS 551

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>CSPG5_MOUSE (Q71M36) Chondroitin sulfate proteoglycan 5 precursor (Neuroglycan|
           C) (Acidic leucine-rich EGF-like domain-containing brain
           protein)
          Length = 566

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 296 EEELGSRPGAGLPRQPRNGRPCRPCVSGEDWKSGAGWPCKAGW 168
           +  LG  PG+ +  +PR G P +   SGE+     G  C+ G+
Sbjct: 326 QHTLGMVPGSSISLRPRPGDPGKDLASGEN-----GTECRVGF 363

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>KIFC3_HUMAN (Q9BVG8) Kinesin-like protein KIFC3|
          Length = 694

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 292 RSSVHAPVPACRASQETGVLADRASQGKTGRAEQGG 185
           R+    P P C  SQE+  L D+ SQ +   AE  G
Sbjct: 22  RTKPAGPCPGCEHSQESAQLRDKLSQLQLEMAESKG 57

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>RS4_METTH (O26142) 30S ribosomal protein S4P|
          Length = 171

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 233 KDARFLAGAAGRHRGVNRAPLLG 301
           +DAR+L G A  H G  R  LLG
Sbjct: 53  RDARYLLGMASEHTGKEREQLLG 75

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>DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrolase,|
           mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP
           pyrophosphatase)
          Length = 252

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = +1

Query: 127 RSHRPLALATSTKHQPALHGHPAPLFQSSPETHGRQGRPFL---GWRGR-PAPGREPSSS 294
           RS   L    + +   A HG P PL  +   + G +G   +   GW+G  P  G  P+  
Sbjct: 33  RSRGTLRARPAPRPPAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPG 92

Query: 295 SRRQLTVTGARARSREM 345
                     RAR  E+
Sbjct: 93  PETPAISPSKRARPAEV 109

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>NEF_HV1Y2 (P35959) Nef protein (Negative factor) (F-protein) (3'ORF)|
           [Contains: C-terminal core protein]
          Length = 213

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = -1

Query: 209 DWKS----GAGWPCKAGWCFVLV 153
           DW++    G  WP   GWCF LV
Sbjct: 132 DWQNYTPGGTRWPLTFGWCFKLV 154

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>CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 3)
           (AGAP-3) (MR1-interacting protein) (MRIP-1)
           (CRAM-associated GTPase) (CRAG)
          Length = 875

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 23  LSHLALAETAPRFLISLSISVHAA-----AIASLPPGIRHVHTGP 142
           LS  A A   P  L   S SV +A     A  SLPPG++H  +GP
Sbjct: 479 LSSSAWAGPRPEGLHQRSCSVSSADQWSEATTSLPPGMQHPASGP 523

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>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 308  SCRLEEELGSRPGAGLPRQPRNG 240
            SC LEE +G  P AG   QP  G
Sbjct: 2864 SCTLEEAVGDTPAAGSSEQPTAG 2886

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>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 172 PALHGHPAPLFQSSPETHGRQGRPFL-GWRGRPAPGREPSSSSRRQL 309
           P   G P P   + P   G QG P   G+RG P P  EP     R L
Sbjct: 154 PGPPGLPGPSGITVPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGL 200

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>RED1_HUMAN (P78563) Double-stranded RNA-specific editase 1 (EC 3.5.-.-) (dsRNA|
           adenosine deaminase) (RNA-editing deaminase 1)
           (RNA-editing enzyme 1)
          Length = 741

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 168 PASLARPPCSALPVFP*DARSARTPV 245
           PASLA+PP   LP FP    S + PV
Sbjct: 214 PASLAQPPLPVLPPFP--PPSGKNPV 237

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>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 169 QPALHGHPAPLFQSSPETHGRQGRPFLGWRGRPAPGREPSSSSRR 303
           QP LHG P+   +  PE              +PAP +EPS  S +
Sbjct: 655 QPTLHGSPSAKAKQPPEADS---------LSKPAPPKEPSVPSEQ 690

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>PTP1_ENCHE (O76273) Major polar tube protein precursor (Major PTP) (PTP Eh55)|
          Length = 453

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -1

Query: 323 APVTVSCRLEEELGSRPGAGLPRQPRNGRPCRPCVSGEDWKS---GAGWPCKAG 171
           AP   SC+L    G+ PG  LP       PC P   G+       G  +PC+ G
Sbjct: 187 APGASSCQLVP--GNTPGQMLPGMTPGVSPCLPTQGGDGSNQTIPGIVYPCQPG 238

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>ITB3_MOUSE (O54890) Integrin beta-3 precursor (Platelet membrane glycoprotein|
           IIIa) (GPIIIa) (CD61 antigen)
          Length = 787

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
 Frame = +3

Query: 120 FGTFTPAPSSSYQYKAPASLARPPC-----SALPVF 212
           FG F   P S Y Y +P    + PC     + LP+F
Sbjct: 178 FGAFVDKPVSPYMYISPPQAIKNPCYNMKNACLPMF 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,241,026
Number of Sequences: 219361
Number of extensions: 857160
Number of successful extensions: 3357
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3352
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result