ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100... 129 5e-30
2PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor (Polyg... 51 1e-06
3PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor (Po... 48 1e-05
4PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor (Po... 40 0.004
5PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor (Po... 37 0.024
6TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 33 0.35
7PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (... 33 0.35
8BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 ... 30 2.3
9Y2393_MYCBO (P67203) Hypothetical UPF0088 protein Mb2393c 29 6.6
10Y2372_MYCTU (P67202) Hypothetical UPF0088 protein Rv2372c/MT2441 29 6.6

>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor|
          Length = 372

 Score =  129 bits (323), Expect = 5e-30
 Identities = 61/120 (50%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
 Frame = +1

Query: 94  VFVSATTAGPACSESDRDALLSIRAALSEAHLGVFSSW-KGADCCANWYGVSCDPTSGRV 270
           VF+S  +    CS  D+ AL + +++LSE +LG+F++W +  DCC  WYG+SCDP SGRV
Sbjct: 16  VFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRV 75

Query: 271 ADLTLRGEGEDAVMAPDGHPASGVMSGYISDHVCHLDALSSLILADWKQISGPIPSCVAT 450
            D++LRGE EDA+    G   SG MSG I   VC L AL+SL+LADWK I+G IP C+ +
Sbjct: 76  TDISLRGESEDAIFQKAGR--SGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITS 133



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>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor|
           (Polygalacturonase-inhibiting protein)
          Length = 330

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
 Frame = +1

Query: 127 CSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSCDPTSGRVADLTL-RGEGED 303
           C+  D+  LL I+ A  + +  V +SWK    C +WY V+CD T+ R+  LT+  G+   
Sbjct: 27  CNPDDKKVLLQIKKAFGDPY--VLASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSG 84

Query: 304 AVMAPDG----------HPASGVMSGYISDHVCHLDALSSLILADWKQISGPIP 435
            + A  G          H     ++G I   +  L  L SL L+ W  +SG +P
Sbjct: 85  QIPALVGDLPYLETLEFHKQPN-LTGPIQPAIAKLKGLKSLRLS-WTNLSGSVP 136



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>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (Floral organ
           regulator 1)
          Length = 332

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
 Frame = +1

Query: 106 ATTAGPA----CSESDRDALLSIRAALSEAHLGVFSSWK--GADCCANWYGVSCDPTSGR 267
           A  A PA    C  SD+ AL+ ++ +L        S+W    ADCC  W  V CD  +GR
Sbjct: 16  AVAAAPARAVRCPPSDKQALMRVKQSLGNP--ATLSTWSLASADCC-EWDHVRCDE-AGR 71

Query: 268 VADLTLRGEGEDAVMAPDGHPASGVMSGYISDHVCHLDALSSLILADWKQISGPIPSCV 444
           V ++ + G  +              + G I   V  L AL SL L     +SGPIP+C+
Sbjct: 72  VNNVFIDGAND--------------VRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACL 116



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>PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 330

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +1

Query: 97  FVSATTAGPACSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSC-DPT-SGRV 270
           F++   +   C+++D++ LL I+ +L+  +    +SW     C +WY + C D T + RV
Sbjct: 15  FLTTCLSKDLCNQNDKNTLLKIKKSLNNPYH--LASWDPQTDCCSWYCLECGDATVNHRV 72

Query: 271 ADLTLRGEGEDAVMAPDGHPASGVMSGYISDHVCHLDALSSLILADWKQISGPIPSCVA 447
             LT+                SG +SG I   V  L  L +L+      ++G I   +A
Sbjct: 73  TALTI---------------FSGQISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIA 116



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>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 330

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
 Frame = +1

Query: 94  VFVSATTAGPACSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSC-DPT-SGR 267
           + ++ + A   C + D+  LL I+ +L+  +    +SW     C +WY + C D T + R
Sbjct: 14  LLLTTSLAKDLCHKDDKTTLLKIKKSLNNPYH--LASWDPKTDCCSWYCLECGDATVNHR 71

Query: 268 VADLTLRGEGEDAVMAPDGHPASG--------------VMSGYISDHVCHLDALSSLILA 405
           V  L ++ +GE +   P   P  G               ++G+I   +  L  L+ L L+
Sbjct: 72  VTSLIIQ-DGEISGQIP---PEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLS 127

Query: 406 DWKQISGPIP 435
            W  ++GP+P
Sbjct: 128 -WTNLTGPVP 136



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>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 202 SWKGADCCANWYGVSCDPTSGRVADLTLRGEGEDAVMAPD 321
           SWKG D C NW G++C  ++G +  ++L        ++P+
Sbjct: 344 SWKGNDPCTNWIGIAC--SNGNITVISLEKMELTGTISPE 381



 Score = 33.1 bits (74), Expect = 0.35
 Identities = 30/114 (26%), Positives = 46/114 (40%)
 Frame = +1

Query: 97  FVSATTAGPACSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSCDPTSGRVAD 276
           F+   +   A S+ D  A+LS++ +L+         W   D C  W  + C  T  RV  
Sbjct: 14  FLLLLSLSKADSDGDLSAMLSLKKSLNPPSS---FGWSDPDPC-KWTHIVCTGTK-RVTR 68

Query: 277 LTLRGEGEDAVMAPDGHPASGVMSGYISDHVCHLDALSSLILADWKQISGPIPS 438
           + +   G    ++PD               + +L  L  L L  W  ISGP+PS
Sbjct: 69  IQIGHSGLQGTLSPD---------------LRNLSELERLEL-QWNNISGPVPS 106



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>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
 Frame = +1

Query: 127 CSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSCDP-TSGRVADL-----TLR 288
           C   D +AL    A L     G  +S    DCC NW G++C+   +GRV  L      L 
Sbjct: 31  CHPHDLEALRDFIAHLEPKPDGWINSSSSTDCC-NWTGITCNSNNTGRVIRLELGNKKLS 89

Query: 289 GEGEDAVMAPDGHPASGVMSGYISD----HVCHLDALSSLILADWKQISGPIPSCV 444
           G+  +++   D      +   +I D     + +L  L +L L+    +SG IP+ +
Sbjct: 90  GKLSESLGKLDEIRVLNLSRNFIKDSIPLSIFNLKNLQTLDLSS-NDLSGGIPTSI 144



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>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
           (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +1

Query: 133 ESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSCDPTSGRVADLTLRGEGEDAVM 312
           ++D  +LLS +  + +    + S+W        + GV+C    GRV ++ L G G   ++
Sbjct: 37  KTDSLSLLSFKTMIQDDPNNILSNWSPRKSPCQFSGVTC--LGGRVTEINLSGSGLSGIV 94

Query: 313 APDGHPASGVMSGY-ISDHVCHLDALSSLIL 402
           + +   +   +S   +S++   L++ S L+L
Sbjct: 95  SFNAFTSLDSLSVLKLSENFFVLNSTSLLLL 125



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>Y2393_MYCBO (P67203) Hypothetical UPF0088 protein Mb2393c|
          Length = 262

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 112 TAGPACSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSCD 252
           T   A  +S+R  L +I  A +EA    F +W+ A C ANW G   D
Sbjct: 80  TVVQALPKSERSEL-AIELA-TEAGADAFLAWQAARCVANWDGARVD 124



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>Y2372_MYCTU (P67202) Hypothetical UPF0088 protein Rv2372c/MT2441|
          Length = 262

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 112 TAGPACSESDRDALLSIRAALSEAHLGVFSSWKGADCCANWYGVSCD 252
           T   A  +S+R  L +I  A +EA    F +W+ A C ANW G   D
Sbjct: 80  TVVQALPKSERSEL-AIELA-TEAGADAFLAWQAARCVANWDGARVD 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,262,489
Number of Sequences: 219361
Number of extensions: 540066
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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