ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_480589.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.073
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.073
3dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.073
4dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.073
5dbj|AK106289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.073
6gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.29
7gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.29
8gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.1
9gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.1
10gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 42 1.1
11gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.1
12ref|NM_194777.1| Oryza sativa (japonica cultivar-group) unknown ... 40 4.5
13gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
14ref|XM_418021.1| PREDICTED: Gallus gallus similar to signal pept... 40 4.5
15gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
16emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 4.5
17gb|AE005730.1| Caulobacter crescentus CB15 section 56 of 359 of ... 40 4.5
18gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, c... 40 4.5
19gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, c... 40 4.5
20gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.5
21dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
22dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
23dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 4.5
24dbj|AB190763.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
25dbj|AB190762.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
26dbj|AB190761.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
27dbj|AB190760.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
28dbj|AB190759.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
29dbj|AB190758.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
30dbj|AB190757.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
31dbj|AB190756.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
32dbj|AB190755.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
33dbj|AB190754.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
34dbj|AB190753.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
35dbj|AB190752.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
36dbj|AB190751.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
37dbj|AB190750.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
38dbj|AB190749.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
39dbj|AB190748.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
40dbj|AB190747.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
41dbj|AB190746.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
42dbj|AB190745.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
43dbj|AB190744.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
44dbj|AB190743.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
45dbj|AB190742.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
46dbj|AB190741.1| Burkholderia plantarii gene for DNA-directed RNA... 40 4.5
47dbj|AK119430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.5
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
50gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromoso... 40 4.5
51dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 4.5

>ref|XM_480589.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 111 cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 170
           ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 174 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 233

                              
Query: 171 cctgcgccgccgctggccg 189
            || |||||||||||||||
Sbjct: 234 actccgccgccgctggccg 252



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                           
Query: 111     cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 170
               ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 6049658 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 6049717

                                  
Query: 171     cctgcgccgccgctggccg 189
                || |||||||||||||||
Sbjct: 6049718 actccgccgccgctggccg 6049736



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>dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1014_H11
          Length = 122464

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                          
Query: 111    cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 170
              ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 100470 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 100529

                                 
Query: 171    cctgcgccgccgctggccg 189
               || |||||||||||||||
Sbjct: 100530 actccgccgccgctggccg 100548



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>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0486F07
          Length = 154926

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                        
Query: 111  cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 170
            ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 5675 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 5734

                               
Query: 171  cctgcgccgccgctggccg 189
             || |||||||||||||||
Sbjct: 5735 actccgccgccgctggccg 5753



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>dbj|AK106289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B01, full
           insert sequence
          Length = 1768

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 111 cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 170
           ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 174 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 233

                              
Query: 171 cctgcgccgccgctggccg 189
            || |||||||||||||||
Sbjct: 234 actccgccgccgctggccg 252



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 219     cggcttcctcggccgggagcgtcgcc 244
               ||||||||||||||| ||||||||||
Sbjct: 1795570 cggcttcctcggccgtgagcgtcgcc 1795545



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 85      ctggcgcgcgtgcccggcgtcgccgacctc 114
               ||||||||| |||||||| |||||||||||
Sbjct: 1439068 ctggcgcgcctgcccggcttcgccgacctc 1439039



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 119     gctgcgcggccgcgcgcaagc 139
               |||||||||||||||||||||
Sbjct: 2184927 gctgcgcggccgcgcgcaagc 2184947



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    ggcgtcgccgacctcttccgctgcg 124
              ||||||||||||| |||||||||||
Sbjct: 193809 ggcgtcgccgaccgcttccgctgcg 193785



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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
            biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 241  cgccagggcggggaagggccgccgg 265
            |||| ||||||||||||||||||||
Sbjct: 6832 cgcctgggcggggaagggccgccgg 6856



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 139     cgctggcgcgacctcgtcacc 159
               |||||||||||||||||||||
Sbjct: 3070217 cgctggcgcgacctcgtcacc 3070237



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>ref|NM_194777.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0087H07.14), mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 134 gcaagcgctggcgcgacctcgtcaccga 161
           ||||||||||||||  ||||||||||||
Sbjct: 137 gcaagcgctggcgccgcctcgtcaccga 164



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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 134   gcaagcgctggcgcgacctcgtcaccga 161
             ||||||||||||||  ||||||||||||
Sbjct: 71546 gcaagcgctggcgccgcctcgtcaccga 71519



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>ref|XM_418021.1| PREDICTED: Gallus gallus similar to signal peptide, CUB domain,
            EGF-like 3; CUB and EGF containing protein 3; CUB domain
            and EGF-like repeat containing 3 (LOC419896), mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 250  ggggaagggccgccgggctc 269
            ||||||||||||||||||||
Sbjct: 2439 ggggaagggccgccgggctc 2458



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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 134     gcaagcgctggcgcgacctcgtcaccga 161
               ||||||||||||||  ||||||||||||
Sbjct: 2279444 gcaagcgctggcgccgcctcgtcaccga 2279417



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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   ccgcgcgcaagcgctggcgc 147
             ||||||||||||||||||||
Sbjct: 45570 ccgcgcgcaagcgctggcgc 45551



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>gb|AE005730.1| Caulobacter crescentus CB15 section 56 of 359 of the complete genome
          Length = 14506

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    tggcgcgcgtgcccggcgtcgccg 109
             |||||||| |||||||||||||||
Sbjct: 13859 tggcgcgcttgcccggcgtcgccg 13836



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>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence
          Length = 156654

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 134    gcaagcgctggcgcgacctcgtcaccga 161
              ||||||||||||||  ||||||||||||
Sbjct: 105098 gcaagcgctggcgccgcctcgtcaccga 105071



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>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence
          Length = 132268

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 134  gcaagcgctggcgcgacctcgtcaccga 161
            ||||||||||||||  ||||||||||||
Sbjct: 8444 gcaagcgctggcgccgcctcgtcaccga 8417



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     gcgcgcgtgcccggcgtcgc 107
              ||||||||||||||||||||
Sbjct: 155214 gcgcgcgtgcccggcgtcgc 155233



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 134     gcaagcgctggcgcgacctcgtcaccga 161
               ||||||||||||||  ||||||||||||
Sbjct: 2279444 gcaagcgctggcgccgcctcgtcaccga 2279417



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 134      gcaagcgctggcgcgacctcgtcaccga 161
                ||||||||||||||  ||||||||||||
Sbjct: 14736132 gcaagcgctggcgccgcctcgtcaccga 14736105



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      ggagatcctggcgcgcgtgc 97
               ||||||||||||||||||||
Sbjct: 1158744 ggagatcctggcgcgcgtgc 1158763



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>dbj|AB190763.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 301723
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190762.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311032
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190761.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311031
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190760.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311030
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190759.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311029
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190758.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302936
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190757.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302924
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190756.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302916
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190755.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302909
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190754.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302907
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190753.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302485
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190752.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302484
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190751.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302482
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190750.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302479
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190749.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302476
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190748.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302470
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190747.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302466
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190746.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302413
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190745.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302412
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190744.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302391
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190743.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302388
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190742.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302387
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AB190741.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302381
          Length = 829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 cctcgtcggcttcctcggcc 232
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227



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>dbj|AK119430.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A03, full
           insert sequence
          Length = 2800

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 134 gcaagcgctggcgcgacctcgtcaccga 161
           ||||||||||||||  ||||||||||||
Sbjct: 283 gcaagcgctggcgccgcctcgtcaccga 310



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     gcgcgacctcgtcaccgagc 163
               ||||||||||||||||||||
Sbjct: 1843766 gcgcgacctcgtcaccgagc 1843785



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 134     gcaagcgctggcgcgacctcgtcaccga 161
               ||||||||||||||  ||||||||||||
Sbjct: 2279395 gcaagcgctggcgccgcctcgtcaccga 2279368



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>gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromosome ul, complete
             sequence
          Length = 142253

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ggggaagggccgccgggctc 269
             ||||||||||||||||||||
Sbjct: 90583 ggggaagggccgccgggctc 90564



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 246     gggcggggaagggccgccgg 265
               ||||||||||||||||||||
Sbjct: 1344756 gggcggggaagggccgccgg 1344775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,141,433
Number of Sequences: 3902068
Number of extensions: 2141433
Number of successful extensions: 48596
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47052
Number of HSP's gapped (non-prelim): 1544
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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