ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TOCC_MAIZE (Q94FY8) Probable tocopherol cyclase, chloroplast pre... 120 6e-28
2TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor (V... 108 4e-24
3PHLD_MYCTU (P0A5R8) Phospholipase C 4 precursor (EC 3.1.4.3) 28 4.2
4PHLD_MYCBO (P0A5R9) Phospholipase C 4 precursor (EC 3.1.4.3) 28 4.2
5GALR_ECOLI (P03024) HTH-type transcriptional regulator galR (Gal... 28 7.1
6ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7) 28 7.1
7DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-) 28 7.1

>TOCC_MAIZE (Q94FY8) Probable tocopherol cyclase, chloroplast precursor|
           (Sucrose export defective 1)
          Length = 474

 Score =  120 bits (302), Expect = 6e-28
 Identities = 52/62 (83%), Positives = 57/62 (91%)
 Frame = +1

Query: 181 LRTPHSGYHYDGTARAFFEGWYFKVSIPECRQSFCFMYSVENPFFRDGMTALDQAIHGPR 360
           LRTPHSGYH+DGTAR FFEGWYFKVSIPECRQSFCFMYSVENP FRDGM+ LD+ ++ PR
Sbjct: 64  LRTPHSGYHFDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPR 123

Query: 361 FT 366
           FT
Sbjct: 124 FT 125



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>TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor (Vitamin E|
           pathway gene 1 protein) (Sucrose export defective 1)
          Length = 488

 Score =  108 bits (269), Expect = 4e-24
 Identities = 46/62 (74%), Positives = 54/62 (87%)
 Frame = +1

Query: 181 LRTPHSGYHYDGTARAFFEGWYFKVSIPECRQSFCFMYSVENPFFRDGMTALDQAIHGPR 360
           LRTPHSGYH+DGT R FFEGWYF+VSIPE R+SFCFMYSVENP FR  ++ L+ A++GPR
Sbjct: 75  LRTPHSGYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPR 134

Query: 361 FT 366
           FT
Sbjct: 135 FT 136



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>PHLD_MYCTU (P0A5R8) Phospholipase C 4 precursor (EC 3.1.4.3)|
          Length = 514

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 369 PGKPWTVYGLVESSHPITKEW-----ILNRVHETEALPALWNGHLEVPSFEESPGGSIIV 205
           P   W +  ++ES HP          I+N +    A PA+W     + S++E+ G    V
Sbjct: 297 PRVSWVIPNVLESEHPAVPAAAGAFAIVNILRILLANPAVWEKTALIVSYDENGGFFDHV 356

Query: 204 IPA 196
           +PA
Sbjct: 357 VPA 359



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>PHLD_MYCBO (P0A5R9) Phospholipase C 4 precursor (EC 3.1.4.3)|
          Length = 514

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 369 PGKPWTVYGLVESSHPITKEW-----ILNRVHETEALPALWNGHLEVPSFEESPGGSIIV 205
           P   W +  ++ES HP          I+N +    A PA+W     + S++E+ G    V
Sbjct: 297 PRVSWVIPNVLESEHPAVPAAAGAFAIVNILRILLANPAVWEKTALIVSYDENGGFFDHV 356

Query: 204 IPA 196
           +PA
Sbjct: 357 VPA 359



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>GALR_ECOLI (P03024) HTH-type transcriptional regulator galR (Galactose operon|
           repressor)
          Length = 343

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 281 KLCLHSGMDTLKYHPSKKALAV 216
           +L +HS M++L YHP+  A A+
Sbjct: 33  RLAVHSAMESLSYHPNANARAL 54



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>ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7)|
          Length = 643

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 365 VNRGPCMAWSRAVIPSRKNGFSTEYMKQK 279
           V RGPC  W    +PS++ G   E   Q+
Sbjct: 108 VPRGPCPEWELKAVPSQQQGICKEEPAQE 136



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>DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-)|
          Length = 562

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 75  RSRGAGRWPGGRHESGGG 22
           R RG G W GGR   GGG
Sbjct: 529 RGRGGGGWRGGRGGGGGG 546


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,632,642
Number of Sequences: 219361
Number of extensions: 696811
Number of successful extensions: 3079
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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