>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 535

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 43/100 (43%), Positives = 59/100 (59%)
 Frame = +3

Query: 123 RNPRFLGPAVVRPLCIVTATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEE 302
           +NP F  P V +P  IV   +   + + V C  R    +R+RSGGH YEGLS+ +  P  
Sbjct: 63  QNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLSYTADTP-- 120

Query: 303 FAVVDLAALRSVRVTVREPAEAWVESGATLGELYHAIGKA 422
           F +VD+  L  + + V     AWVESGATLGELY+AI ++
Sbjct: 121 FVIVDMMNLNRISIDVLSET-AWVESGATLGELYYAIAQS 159

>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 538

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 40/97 (41%), Positives = 57/97 (58%)
 Frame = +3

Query: 123 RNPRFLGPAVVRPLCIVTATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEE 302
           +NP F    + +P  I+   +   +   + C R+    +R+RSGGH YEGLS+ S  P  
Sbjct: 59  QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTP-- 116

Query: 303 FAVVDLAALRSVRVTVREPAEAWVESGATLGELYHAI 413
           F ++DL  L  V + + E   AWVESG+TLGELY+AI
Sbjct: 117 FILIDLMNLNRVSIDL-ESETAWVESGSTLGELYYAI 152

>HDNO_ARTOX (P08159) 6-hydroxy-D-nicotine oxidase (EC 1.5.3.6) (6-HDNO)|
          Length = 458

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 25/93 (26%), Positives = 40/93 (43%)
 Frame = +3

Query: 141 GPAVVRPLCIVTATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDL 320
           G  + RP  I    +A  V  +V     +G+ + VRSGGH+  G     A  +   V+DL
Sbjct: 32  GRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGY----ATNDGGIVLDL 87

Query: 321 AALRSVRVTVREPAEAWVESGATLGELYHAIGK 419
             + S+ +     + A +  G   G+L     K
Sbjct: 88  RLMNSIHIDT-AGSRARIGGGVISGDLVKEAAK 119

>YEK3_SCHPO (O36015) Putative ribosomal RNA methyltransferase C4F10.03c (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase)
          Length = 285

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 129 PRFLGPAVVRPLCIVTATNASHVQAAVVCGRRHG 230
           P    P + +PLC++  TNA  +   + CG   G
Sbjct: 210 PSNFQPDLTKPLCVIDPTNAHEIAPFIACGDLDG 243

>AAEA_YERPS (Q665H1) p-hydroxybenzoic acid efflux pump subunit aaeA (pHBA|
           efflux pump protein A)
          Length = 311

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 306 AVVDLAALRSVRVTVREPAEAWV 374
           AV DLA L   R TVR PAE WV
Sbjct: 143 AVRDLARLDLERTTVRAPAEGWV 165

>AAEA_YERPE (Q8ZAU9) p-hydroxybenzoic acid efflux pump subunit aaeA (pHBA|
           efflux pump protein A)
          Length = 311

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 306 AVVDLAALRSVRVTVREPAEAWV 374
           AV DLA L   R TVR PAE WV
Sbjct: 143 AVRDLARLDLERTTVRAPAEGWV 165

>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 ATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVRE 356
           A N + V    + GR H +R+ + + GH   G  F  A PE  ++     L +  +T+  
Sbjct: 145 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDQF-YASPEALSLAPRLQLHAEMLTITH 203

Query: 357 PA 362
           PA
Sbjct: 204 PA 205

>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 ATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVRE 356
           A N + V    + GR H +R+ + + GH   G  F  A PE  A+     L +  +T+  
Sbjct: 145 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF-YASPEARAMAPRLLLHAEMLTITH 203

Query: 357 PA 362
           PA
Sbjct: 204 PA 205

>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 ATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVRE 356
           A N + V    + GR H +R+ + + GH   G  F  A PE  ++     L +  +T+  
Sbjct: 145 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF-YASPEALSLAPRLQLHAEMLTITH 203

Query: 357 PA 362
           PA
Sbjct: 204 PA 205

>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 ATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVRE 356
           A N + V    + GR H +R+ + + GH   G  F  A PE  A+     L +  +T+  
Sbjct: 145 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF-YASPEARAMAPRLLLHAEMLTITH 203

Query: 357 PA 362
           PA
Sbjct: 204 PA 205

>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 ATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVRE 356
           A N + V    + GR H +R+ + + GH   G  F  A PE  A+     L +  +T+  
Sbjct: 145 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF-YASPEARAMAPRLLLHAEMLTITH 203

Query: 357 PA 362
           PA
Sbjct: 204 PA 205

>RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 ATNASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVRE 356
           A N + V    + GR H +R+ + + GH   G  F  A PE  A+     L +  +T+  
Sbjct: 145 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF-YASPEARAMAPRLLLHAEMLTITH 203

Query: 357 PA 362
           PA
Sbjct: 204 PA 205

>NORM_DEIRA (Q9RY44) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 451

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 270 GLSFRSARPEEFAVVDLAALR---SVRVTVREPAEAWVESGAT 389
           GL   SA    FAV++LAA R   SV V V +PA A + + AT
Sbjct: 318 GLGLSSAVMLTFAVIELAAPRTVFSVFVNVNDPANAGLIAAAT 360

>XYLA_LACBR (P29443) Xylose isomerase (EC 5.3.1.5)|
          Length = 449

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 126 NPRFLGPAVVRPLCIVTATNASHVQAAVVCGRRHGVRLRVRSGGHD-YEGLSFRSARPEE 302
           NPRF+  A   P   V A +A+ ++ ++  G+R G    V  GG + YE L   + + E+
Sbjct: 149 NPRFVEGAATSPYADVFAYSAAQLKHSLEIGKRVGSENYVFWGGREGYESLWNTNMKQEQ 208

>IF2M_SCHPO (O59683) Translation initiation factor IF-2, mitochondrial|
           precursor (IF-2Mt) (IF-2(Mt))
          Length = 686

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 225 HGVRLRVRSGGHDYEGLSFRSAR--PE-EFAVVDLAALRSVRVTVREPAEAW-VESGATL 392
           +G+++    G      +S ++ +  PE E A++ LA +  +R + R+P + W VES  T 
Sbjct: 299 NGIQVEALGGETQIIPISAKTGKGIPELEAAILTLAEIMEIRASPRDPFQGWIVESSVTK 358

Query: 393 G 395
           G
Sbjct: 359 G 359

>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3341

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 252  GGHDYEGLSFRSARPEEFAVVDLAALRSVRV 344
            GG  ++ + FR+  P  FA+V +A+L SV V
Sbjct: 2284 GGFRFDEIPFRAVLPSGFAIVAIASLPSVVV 2314

>RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 219

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 183 NASHVQAAVVCGRRHGVRLRVRSGGHDYEGLSFRSARPEEFAVVDLAALRSVRVTVREP- 359
           N + V+   + GR H +RL + + GH   G  F  A P+  A+     L + ++  R P 
Sbjct: 148 NTTRVKLTPITGRSHQLRLHMLALGHPILGDKF-YAPPQAKALSPRLCLHAEQLAFRHPI 206

Query: 360 AEAWVESGA 386
            + W+   A
Sbjct: 207 TQEWLSFSA 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,396,499
Number of Sequences: 219361
Number of extensions: 546879
Number of successful extensions: 1910
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)