ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59f05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 268 bits (135), Expect = 1e-68 Identities = 234/267 (87%) Strand = Plus / Minus Query: 79 cgcggagctcgccgtcgttcgcgtccgtcctggcgtcgtccgtccggaacccgcggttcc 138 ||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| |||||| Sbjct: 20461987 cgcggggctcgtcgtcgttcgcgtcggtgctggcgtcgtccgtcaggaacccgaggttcc 20461928 Query: 139 tcgggccggccgtggtgcggccgctctgcatcgtcacggcgaccaacgcatcccacgtcc 198 | | ||| | | ||||||||||||||| |||| | | | |||||||| || ||||||| Sbjct: 20461927 tggcgcccggcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtcc 20461868 Query: 199 aggccgccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggc 258 |||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 20461867 aggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcgggc 20461808 Query: 259 acgactacgagggcctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacc 318 ||||||||||||||||||||| |||||||| ||| | |||| ||||||||| ||||||| Sbjct: 20461807 acgactacgagggcctctcgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacc 20461748 Query: 319 tcgccgccctccgctccgtgcgcgtca 345 |||||| |||||||||||||||||||| Sbjct: 20461747 tcgccggcctccgctccgtgcgcgtca 20461721 Score = 165 bits (83), Expect = 1e-37 Identities = 146/167 (87%) Strand = Plus / Minus Query: 155 gcggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctg 214 ||||||| |||| ||| ||||| |||| ||||| |||||||||||||||||||| |||| Sbjct: 20486383 gcggccggtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctg 20486324 Query: 215 cggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcct 274 |||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| Sbjct: 20486323 cggccgccggaacggcgtccgcctccgcatccgcagcggcgggcacgactacgagggcct 20486264 Query: 275 ctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctcg 321 ||||| | |||| | |||||| ||| ||||||||| ||||||||| Sbjct: 20486263 ctcgtacaggtcggagcggccggagacgttcgccgtgctcgacctcg 20486217 Score = 157 bits (79), Expect = 4e-35 Identities = 214/255 (83%), Gaps = 8/255 (3%) Strand = Plus / Minus Query: 157 ggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcg 216 |||||||||||||||||||| || || |||| || ||||||||||||||||| |||||| Sbjct: 20438095 ggccgctctgcatcgtcacgccggccgacgcgtcgcacgtccaggccgccgtgctctgcg 20438036 Query: 217 gccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctct 276 ||||| | || ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 20438035 gccgcgccgagggggtgcgcctccgcgcgcgcagcggcgggcacgactacgagggcctct 20437976 Query: 277 cgttccggtccgcgcggc---ccgaggagttcgccgtcgtcgacctcgccgcc---ctcc 330 ||| |||||||||||| | ||||| |||||| || |||||||||| |||| |||| Sbjct: 20437975 cgtaccggtccgcgcgccgcggcgaggtgttcgcggtggtcgacctcggcgccaggctcc 20437916 Query: 331 gctccgtgcgcgtcaccgtgagggagc-cggccgaggcgtgggtcgagtccggcgccacg 389 || ||||| |||||| || | ||| || ||| ||||||||| ||||||||||| || Sbjct: 20437915 gcgccgtgagcgtcagcg-gcgggggcgacgccacggcgtgggtggagtccggcgcgtcg 20437857 Query: 390 ctcggggagctgtac 404 ||||||||||||||| Sbjct: 20437856 ctcggggagctgtac 20437842 Score = 123 bits (62), Expect = 5e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||| |||||||||| ||||| || | |||||| |||||||||||||||||||||| Sbjct: 20466048 gccgctgtgcatcgtcatggcgaagaagacctcccacatccaggccgccgtcgtctgcgg 20465989 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 ||||||||| | || ||| |||||| ||||||||||||||||||||||||||| ||||| Sbjct: 20465988 ccgccggcatcgtgtccgcgtccgcgcgcgcagcggcgggcacgactacgaggggctctc 20465929 Query: 278 gt 279 || Sbjct: 20465928 gt 20465927 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 212 ctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgaggg 271 |||||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||| Sbjct: 20421550 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcggccacgactacgaggg 20421491 Query: 272 cctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctcg 321 |||||||| |||||| | | |||||| ||||||| |||||||||||| Sbjct: 20421490 cctctcgtaccggtcggagatccccgagccgttcgccatcgtcgacctcg 20421441 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 213 tgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggc 272 |||||||| || ||||| || ||| |||||| |||||||||||||||||||||||||||| Sbjct: 20389536 tgcggccggcgccacggggtccgcgtccgcgcgcgcagcggcgggcacgactacgagggc 20389477 Query: 273 ctctc 277 ||||| Sbjct: 20389476 ctctc 20389472 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 366 gcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcgggaaggc 421 |||||||| || |||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 20486175 gcgtgggtggactccggcgcgacgctcggggagatgtactacgccatcgggaaggc 20486120 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatc 413 ||||||||| |||||||||| |||||||| |||||||||||||||||| Sbjct: 20465841 ggcgtgggtgcagtccggcgcgacgctcggcgagctgtaccacgccatc 20465793 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 360 gccgaggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgc 409 |||||||||||||||| ||| |||||||||||||| ||||| ||| |||| Sbjct: 20389389 gccgaggcgtgggtcgggtcgggcgccacgctcggcgagctctactacgc 20389340 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcg 414 ||||||||||| |||||||| |||||||| ||| ||||| ||||||||| Sbjct: 20404643 ggcgtgggtcggctccggcgcgacgctcggcgaggtgtactacgccatcg 20404594 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 246 cgcagcggcgggcacgactacgagggcct 274 |||||||||||||| |||||||||||||| Sbjct: 20404768 cgcagcggcgggcatgactacgagggcct 20404740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 gaggagttcgccgtcgtcgacctcg 321 |||||||||||||||| |||||||| Sbjct: 6108348 gaggagttcgccgtcgacgacctcg 6108324
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 268 bits (135), Expect = 1e-68 Identities = 234/267 (87%) Strand = Plus / Minus Query: 79 cgcggagctcgccgtcgttcgcgtccgtcctggcgtcgtccgtccggaacccgcggttcc 138 ||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| |||||| Sbjct: 34282 cgcggggctcgtcgtcgttcgcgtcggtgctggcgtcgtccgtcaggaacccgaggttcc 34223 Query: 139 tcgggccggccgtggtgcggccgctctgcatcgtcacggcgaccaacgcatcccacgtcc 198 | | ||| | | ||||||||||||||| |||| | | | |||||||| || ||||||| Sbjct: 34222 tggcgcccggcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtcc 34163 Query: 199 aggccgccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggc 258 |||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 34162 aggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcgggc 34103 Query: 259 acgactacgagggcctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacc 318 ||||||||||||||||||||| |||||||| ||| | |||| ||||||||| ||||||| Sbjct: 34102 acgactacgagggcctctcgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacc 34043 Query: 319 tcgccgccctccgctccgtgcgcgtca 345 |||||| |||||||||||||||||||| Sbjct: 34042 tcgccggcctccgctccgtgcgcgtca 34016 Score = 165 bits (83), Expect = 1e-37 Identities = 146/167 (87%) Strand = Plus / Minus Query: 155 gcggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctg 214 ||||||| |||| ||| ||||| |||| ||||| |||||||||||||||||||| |||| Sbjct: 58678 gcggccggtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctg 58619 Query: 215 cggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcct 274 |||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| Sbjct: 58618 cggccgccggaacggcgtccgcctccgcatccgcagcggcgggcacgactacgagggcct 58559 Query: 275 ctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctcg 321 ||||| | |||| | |||||| ||| ||||||||| ||||||||| Sbjct: 58558 ctcgtacaggtcggagcggccggagacgttcgccgtgctcgacctcg 58512 Score = 157 bits (79), Expect = 4e-35 Identities = 214/255 (83%), Gaps = 8/255 (3%) Strand = Plus / Minus Query: 157 ggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcg 216 |||||||||||||||||||| || || |||| || ||||||||||||||||| |||||| Sbjct: 10390 ggccgctctgcatcgtcacgccggccgacgcgtcgcacgtccaggccgccgtgctctgcg 10331 Query: 217 gccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctct 276 ||||| | || ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 10330 gccgcgccgagggggtgcgcctccgcgcgcgcagcggcgggcacgactacgagggcctct 10271 Query: 277 cgttccggtccgcgcggc---ccgaggagttcgccgtcgtcgacctcgccgcc---ctcc 330 ||| |||||||||||| | ||||| |||||| || |||||||||| |||| |||| Sbjct: 10270 cgtaccggtccgcgcgccgcggcgaggtgttcgcggtggtcgacctcggcgccaggctcc 10211 Query: 331 gctccgtgcgcgtcaccgtgagggagc-cggccgaggcgtgggtcgagtccggcgccacg 389 || ||||| |||||| || | ||| || ||| ||||||||| ||||||||||| || Sbjct: 10210 gcgccgtgagcgtcagcg-gcgggggcgacgccacggcgtgggtggagtccggcgcgtcg 10152 Query: 390 ctcggggagctgtac 404 ||||||||||||||| Sbjct: 10151 ctcggggagctgtac 10137 Score = 123 bits (62), Expect = 5e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||| |||||||||| ||||| || | |||||| |||||||||||||||||||||| Sbjct: 38343 gccgctgtgcatcgtcatggcgaagaagacctcccacatccaggccgccgtcgtctgcgg 38284 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 ||||||||| | || ||| |||||| ||||||||||||||||||||||||||| ||||| Sbjct: 38283 ccgccggcatcgtgtccgcgtccgcgcgcgcagcggcgggcacgactacgaggggctctc 38224 Query: 278 gt 279 || Sbjct: 38223 gt 38222 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 366 gcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcgggaaggc 421 |||||||| || |||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 58470 gcgtgggtggactccggcgcgacgctcggggagatgtactacgccatcgggaaggc 58415 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatc 413 ||||||||| |||||||||| |||||||| |||||||||||||||||| Sbjct: 38136 ggcgtgggtgcagtccggcgcgacgctcggcgagctgtaccacgccatc 38088
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 268 bits (135), Expect = 1e-68 Identities = 234/267 (87%) Strand = Plus / Plus Query: 79 cgcggagctcgccgtcgttcgcgtccgtcctggcgtcgtccgtccggaacccgcggttcc 138 ||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| |||||| Sbjct: 200 cgcggggctcgtcgtcgttcgcgtcggtgctggcgtcgtccgtcaggaacccgaggttcc 259 Query: 139 tcgggccggccgtggtgcggccgctctgcatcgtcacggcgaccaacgcatcccacgtcc 198 | | ||| | | ||||||||||||||| |||| | | | |||||||| || ||||||| Sbjct: 260 tggcgcccggcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtcc 319 Query: 199 aggccgccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggc 258 |||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 320 aggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcgggc 379 Query: 259 acgactacgagggcctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacc 318 ||||||||||||||||||||| |||||||| ||| | |||| ||||||||| ||||||| Sbjct: 380 acgactacgagggcctctcgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacc 439 Query: 319 tcgccgccctccgctccgtgcgcgtca 345 |||||| |||||||||||||||||||| Sbjct: 440 tcgccggcctccgctccgtgcgcgtca 466
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 186 bits (94), Expect = 4e-44 Identities = 145/162 (89%) Strand = Plus / Plus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||| ||| ||||||||| | |||||||| |||||| ||||| ||||||| || ||||| Sbjct: 180 gccgatctacatcgtcacccccaccaacgcctcccacatccagtccgccgtggtgtgcgg 239 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 240 ccgccggcacggtgtccgcatccgcgtgcgcagcggcgggcacgactacgagggcctctc 299 Query: 278 gttccggtccgcgcggcccgaggagttcgccgtcgtcgacct 319 || ||||||| || ||||||||||||||||||||||||||| Sbjct: 300 gtaccggtccctgcagcccgaggagttcgccgtcgtcgacct 341 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatc 413 |||||||||||| |||||||| |||||| ||||| ||| |||||||| Sbjct: 384 ggcgtgggtcgactccggcgcgcagctcggcgagctctactacgccatc 432
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 165 bits (83), Expect = 1e-37 Identities = 143/163 (87%) Strand = Plus / Plus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||||| |||| |||| | |||||||| |||||| ||||| |||| || || ||||| Sbjct: 225 gccgctctacatcatcacccccaccaacgcctcccacatccagtccgcggtggtgtgcgg 284 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 ||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| || Sbjct: 285 ccgccggcacggcgtccgcatccgcgtgcggagcggcggccacgactacgagggcctgtc 344 Query: 278 gttccggtccgcgcggcccgaggagttcgccgtcgtcgacctc 320 || |||||||| ||| ||||||| ||||||||||||||||||| Sbjct: 345 gtaccggtccgagcgccccgaggcgttcgccgtcgtcgacctc 387
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 165 bits (83), Expect = 1e-37 Identities = 146/167 (87%) Strand = Plus / Plus Query: 155 gcggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctg 214 ||||||| |||| ||| ||||| |||| ||||| |||||||||||||||||||| |||| Sbjct: 289 gcggccggtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctg 348 Query: 215 cggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcct 274 |||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| Sbjct: 349 cggccgccggaacggcgtccgcctccgcatccgcagcggcgggcacgactacgagggcct 408 Query: 275 ctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctcg 321 ||||| | |||| | |||||| ||| ||||||||| ||||||||| Sbjct: 409 ctcgtacaggtcggagcggccggagacgttcgccgtgctcgacctcg 455 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 366 gcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcgggaaggc 421 |||||||| || |||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 497 gcgtgggtggactccggcgcgacgctcggggagatgtactacgccatcgggaaggc 552
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 153 bits (77), Expect = 6e-34 Identities = 155/181 (85%) Strand = Plus / Minus Query: 164 ctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccg 223 ||||||||| ||||| || |||| |||||||||||||||||||| ||||||| ||| Sbjct: 74501 ctgcatcgtggcggcgtccgacgcgtcccacgtccaggccgccgtgcggtgcggccaccg 74442 Query: 224 gcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgttccg 283 | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 74441 gagcggcgtccgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgtaccg 74382 Query: 284 gtccgcgcggcccgaggagttcgccgtcgtcgacctcgccgccctccgctccgtgcgcgt 343 ||| ||| ||||| ||||||||| |||||||||||| |||||| |||||||||| Sbjct: 74381 cgccgtgcgcgccgagacgttcgccgtgctcgacctcgccgggctccgcgccgtgcgcgt 74322 Query: 344 c 344 | Sbjct: 74321 c 74321 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcggga 417 ||||||||| || ||||||||||||||||||||||| ||| ||||| |||||| Sbjct: 74303 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgtcggga 74251
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 153 bits (77), Expect = 6e-34 Identities = 155/181 (85%) Strand = Plus / Minus Query: 164 ctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccg 223 ||||||||| ||||| || |||| |||||||||||||||||||| ||||||| ||| Sbjct: 17006894 ctgcatcgtggcggcgtccgacgcgtcccacgtccaggccgccgtgcggtgcggccaccg 17006835 Query: 224 gcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgttccg 283 | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 17006834 gagcggcgtccgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgtaccg 17006775 Query: 284 gtccgcgcggcccgaggagttcgccgtcgtcgacctcgccgccctccgctccgtgcgcgt 343 ||| ||| ||||| ||||||||| |||||||||||| |||||| |||||||||| Sbjct: 17006774 cgccgtgcgcgccgagacgttcgccgtgctcgacctcgccgggctccgcgccgtgcgcgt 17006715 Query: 344 c 344 | Sbjct: 17006714 c 17006714 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcggga 417 ||||||||| || ||||||||||||||||||||||| ||| ||||| |||||| Sbjct: 17006696 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgtcggga 17006644
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 153 bits (77), Expect = 6e-34 Identities = 155/181 (85%) Strand = Plus / Minus Query: 164 ctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccg 223 ||||||||| ||||| || |||| |||||||||||||||||||| ||||||| ||| Sbjct: 17101546 ctgcatcgtggcggcgtccgacgcgtcccacgtccaggccgccgtgcggtgcggccaccg 17101487 Query: 224 gcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgttccg 283 | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 17101486 gagcggcgtccgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgtaccg 17101427 Query: 284 gtccgcgcggcccgaggagttcgccgtcgtcgacctcgccgccctccgctccgtgcgcgt 343 ||| ||| ||||| ||||||||| |||||||||||| |||||| |||||||||| Sbjct: 17101426 cgccgtgcgcgccgagacgttcgccgtgctcgacctcgccgggctccgcgccgtgcgcgt 17101367 Query: 344 c 344 | Sbjct: 17101366 c 17101366 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcggga 417 ||||||||| || ||||||||||||||||||||||| ||| ||||| |||||| Sbjct: 17101348 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgtcggga 17101296
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 151 bits (76), Expect = 2e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 178 cgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcgtgcgcc 237 |||||||||| |||||| ||||||||||||| || |||||||||||||||||| ||||| Sbjct: 257 cgaccaacgcctcccacatccaggccgccgtggtgtgcggccgccggcacggcatgcgca 316 Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgttccggtccgcgcggcccg 297 ||||||||||||| |||||||||||||||||||| || |||| |||||||| | ||||| Sbjct: 317 tccgcgtgcgcagtggcgggcacgactacgaggggctgtcgtaccggtccgagaagcccg 376 Query: 298 aggagttcgccgtcgt 313 || |||||||||||| Sbjct: 377 agccgttcgccgtcgt 392
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 149 bits (75), Expect = 9e-33 Identities = 141/163 (86%) Strand = Plus / Plus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||||| |||| |||| | ||||||| |||||| ||||| ||||||| || ||||| Sbjct: 180 gccgctctacatcatcacccccaccaacgtctcccacatccagtccgccgtggtgtgcgg 239 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 |||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 240 ccgccgccacagcgtccgcatccgcgtgcgcagcggcgggcacgactacgagggcctctc 299 Query: 278 gttccggtccgcgcggcccgaggagttcgccgtcgtcgacctc 320 || |||||| || ||||||| ||||||||||||||||||| Sbjct: 300 gtaccggtctttgcagcccgagacgttcgccgtcgtcgacctc 342
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 149 bits (75), Expect = 9e-33 Identities = 141/163 (86%) Strand = Plus / Plus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||||| |||| |||| | |||||| | |||||| ||||| | || || || ||||| Sbjct: 219 gccgctctacatcatcacccccaccaacacctcccacatccagtctgctgtggtgtgcgg 278 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 279 ccgccggcacggcgtccgcctccgcgtgcggagcggcggccacgactacgagggcctgtc 338 Query: 278 gttccggtccgcgcggcccgaggagttcgccgtcgtcgacctc 320 || |||||||| ||| ||||||| |||||||||||| |||||| Sbjct: 339 gtaccggtccgagcgccccgaggcgttcgccgtcgtagacctc 381
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 149 bits (75), Expect = 9e-33 Identities = 141/163 (86%) Strand = Plus / Plus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||||| |||| |||| | ||||||| |||||| ||||| ||||||| || ||||| Sbjct: 266 gccgctctacatcatcacccccaccaacgtctcccacatccagtccgccgtggtgtgcgg 325 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 |||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 326 ccgccgccacagcgtccgcatccgcgtgcgcagcggcgggcacgactacgagggcctctc 385 Query: 278 gttccggtccgcgcggcccgaggagttcgccgtcgtcgacctc 320 || |||||| || ||||||| ||||||||||||||||||| Sbjct: 386 gtaccggtctttgcagcccgagacgttcgccgtcgtcgacctc 428
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 137 bits (69), Expect = 3e-29 Identities = 123/141 (87%) Strand = Plus / Plus Query: 180 accaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcgtgcgcctc 239 |||||||| |||||| |||| |||| || || |||||||||||||||||||| |||||| Sbjct: 238 accaacgcctcccacatccaatccgcggtggtgtgcggccgccggcacggcgtccgcctc 297 Query: 240 cgcgtgcgcagcggcgggcacgactacgagggcctctcgttccggtccgcgcggcccgag 299 |||||||| |||||||| ||||||||||||||||| |||| |||||||| | |||||| Sbjct: 298 cgcgtgcggagcggcggccacgactacgagggcctgtcgtaccggtccgagaaacccgag 357 Query: 300 gagttcgccgtcgtcgacctc 320 ||||||||||||||||||| Sbjct: 358 acgttcgccgtcgtcgacctc 378 Score = 46.1 bits (23), Expect = 0.092 Identities = 47/55 (85%) Strand = Plus / Plus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcgggaag 419 |||||||||||| |||||||| |||||| ||||| ||| ||||||||| |||| Sbjct: 420 ggcgtgggtcgaatccggcgcgcagctcggcgagctctactacgccatcgcgaag 474
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 125 bits (63), Expect = 1e-25 Identities = 120/139 (86%) Strand = Plus / Plus Query: 172 tcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcg 231 ||||| |||| ||||| |||||||| ||||||||||| | |||||||||||| ||| Sbjct: 269 tcacgccgacgaacgcctcccacgtgcaggccgccgtgctgtgcggccgccggagcgggc 328 Query: 232 tgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgttccggtccgcgc 291 ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct: 329 tgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccgtgc 388 Query: 292 ggcccgaggagttcgccgt 310 | ||||| ||||||||| Sbjct: 389 gcgccgagtcgttcgccgt 407
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 121 bits (61), Expect = 2e-24 Identities = 121/141 (85%) Strand = Plus / Plus Query: 180 accaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcgtgcgcctc 239 |||||||| || ||| ||||| |||| || || |||||||||||||||||| | |||||| Sbjct: 241 accaacgcctcgcacatccagtccgcggtggtgtgcggccgccggcacggcatccgcctc 300 Query: 240 cgcgtgcgcagcggcgggcacgactacgagggcctctcgttccggtccgcgcggcccgag 299 |||||||| |||||||| ||||||||||||||||| |||| |||||| | | |||||| Sbjct: 301 cgcgtgcggagcggcggccacgactacgagggcctgtcgtaccggtctgagaaacccgag 360 Query: 300 gagttcgccgtcgtcgacctc 320 ||||||||||||||||||| Sbjct: 361 acgttcgccgtcgtcgacctc 381
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 117 bits (59), Expect = 3e-23 Identities = 137/163 (84%) Strand = Plus / Plus Query: 158 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 217 |||||||| |||| |||| | |||||||| || ||| ||||| |||| || || ||||| Sbjct: 216 gccgctctacatcatcacccccaccaacgcctcgcacatccagtccgcggtggtgtgcgg 275 Query: 218 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctc 277 ||||||||| |||| ||||||||||| || |||||||| ||||||||||||||||| || Sbjct: 276 acgccggcacagcgtccgcctccgcgtccggagcggcggccacgactacgagggcctgtc 335 Query: 278 gttccggtccgcgcggcccgaggagttcgccgtcgtcgacctc 320 || |||||||| | |||||| ||||||||||||||||||| Sbjct: 336 gtaccggtccgagaaacccgagacgttcgccgtcgtcgacctc 378 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Plus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcg 414 |||||||||||| |||||||| |||||| ||||| ||| ||||||||| Sbjct: 420 ggcgtgggtcgaatccggcgcgcagctcggcgagctctactacgccatcg 469
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 105 bits (53), Expect = 1e-19 Identities = 101/117 (86%) Strand = Plus / Plus Query: 204 gccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgac 263 ||||| || ||||||||||| ||| ||| ||| ||||||| |||||||||||||||||| Sbjct: 2 gccgtggtgtgcggccgccgttacgacgtccgcatccgcgtacgcagcggcgggcacgac 61 Query: 264 tacgagggcctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctc 320 |||||||||||||||| ||| ||| || ||||||| | ||||| |||||||||||| Sbjct: 62 tacgagggcctctcgtaccgctccctgcagcccgagaacttcgcagtcgtcgacctc 118 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatc 413 |||||||||||| |||||||| |||||| ||||| ||| |||||||| Sbjct: 160 ggcgtgggtcgactccggcgcgcagctcggcgagctctactacgccatc 208
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 212 ctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgaggg 271 |||||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||| Sbjct: 144945 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcggccacgactacgaggg 144886 Query: 272 cctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctcg 321 |||||||| |||||| | | |||||| ||||||| |||||||||||| Sbjct: 144885 cctctcgtaccggtcggagatccccgagccgttcgccatcgtcgacctcg 144836 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 213 tgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgagggc 272 |||||||| || ||||| || ||| |||||| |||||||||||||||||||||||||||| Sbjct: 112931 tgcggccggcgccacggggtccgcgtccgcgcgcgcagcggcgggcacgactacgagggc 112872 Query: 273 ctctc 277 ||||| Sbjct: 112871 ctctc 112867 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 360 gccgaggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgc 409 |||||||||||||||| ||| |||||||||||||| ||||| ||| |||| Sbjct: 112784 gccgaggcgtgggtcgggtcgggcgccacgctcggcgagctctactacgc 112735 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcg 414 ||||||||||| |||||||| |||||||| ||| ||||| ||||||||| Sbjct: 128038 ggcgtgggtcggctccggcgcgacgctcggcgaggtgtactacgccatcg 127989 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 246 cgcagcggcgggcacgactacgagggcct 274 |||||||||||||| |||||||||||||| Sbjct: 128163 cgcagcggcgggcatgactacgagggcct 128135
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Plus Query: 212 ctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcgggcacgactacgaggg 271 |||||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||| Sbjct: 316 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcggccacgactacgaggg 375 Query: 272 cctctcgttccggtccgcgcggcccgaggagttcgccgtcgtcgacctcg 321 |||||||| |||||| | | |||||| ||||||| |||||||||||| Sbjct: 376 cctctcgtaccggtcggagatccccgagccgttcgccatcgtcgacctcg 425
>ref|NM_192799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3201 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2462 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 2421 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 303 ttcgccgtcgtcgacctcgccgccctcc 330 ||||||||||||||| ||||||| |||| Sbjct: 2376 ttcgccgtcgtcgacgtcgccgcgctcc 2349
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 106106 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 106147
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 12338628 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 12338669
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 7689749 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 7689790 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 tgccgccgacgacttcctccgg 41 |||||||||||||||||||||| Sbjct: 33494122 tgccgccgacgacttcctccgg 33494101
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 24483701 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 24483742 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| |||||||||||||||| |||||||||||||||||| Sbjct: 10209768 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgt 10209727 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 303 ttcgccgtcgtcgacctcgccgccctcc 330 ||||||||||||||| ||||||| |||| Sbjct: 24483787 ttcgccgtcgtcgacgtcgccgcgctcc 24483814
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 64085 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 64126 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 303 ttcgccgtcgtcgacctcgccgccctcc 330 ||||||||||||||| ||||||| |||| Sbjct: 64171 ttcgccgtcgtcgacgtcgccgcgctcc 64198
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 26014 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgt 26055
>ref|XM_462837.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| |||||||||||||||| |||||||||||||||||| Sbjct: 674 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgt 715
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| |||||||||||||||| |||||||||||||||||| Sbjct: 75082 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgt 75041
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 238 tccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 |||||| |||||||||||||||| |||||||||||||||||| Sbjct: 134367 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgt 134326
>ref|XM_481787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 232 tgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 ||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 296 tgcgcatccgcgtgcgcagcggcgcgcacagctacgagggcctctcgt 343 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 366 gcgtgggtcgagtccggcgccacgctcgg 394 |||||||| ||||||||||| |||||||| Sbjct: 445 gcgtgggttgagtccggcgcgacgctcgg 473
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 232 tgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 ||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 15504538 tgcgcatccgcgtgcgcagcggcgcgcacagctacgagggcctctcgt 15504491 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 gcgtgggtcgagtccggcgccacgctcgg 394 |||||||| ||||||||||| |||||||| Sbjct: 15504389 gcgtgggttgagtccggcgcgacgctcgg 15504361
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 232 tgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctctcgt 279 ||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 52296 tgcgcatccgcgtgcgcagcggcgcgcacagctacgagggcctctcgt 52249 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 gcgtgggtcgagtccggcgccacgctcgg 394 |||||||| ||||||||||| |||||||| Sbjct: 52147 gcgtgggttgagtccggcgcgacgctcgg 52119
>dbj|AK105176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence Length = 1757 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 365 ggcgtgggtcgagtccggcgccacgctcggggagctgtaccacgccatcg 414 ||||||||||| |||||||| |||||||| ||| ||||| ||||||||| Sbjct: 493 ggcgtgggtcggctccggcgcgacgctcggcgaggtgtactacgccatcg 542 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 246 cgcagcggcgggcacgactacgagggcct 274 |||||||||||||| |||||||||||||| Sbjct: 368 cgcagcggcgggcatgactacgagggcct 396
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 299 ggagttcgccgtcgtcgacctcgc 322 |||||||||||||||||||||||| Sbjct: 3121154 ggagttcgccgtcgtcgacctcgc 3121131
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 306 gccgtcgtcgacctcgccgccct 328 ||||||||||||||||||||||| Sbjct: 40188 gccgtcgtcgacctcgccgccct 40210
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 gccgtcgtcgacctcgccgccct 328 ||||||||||||||||||||||| Sbjct: 19336193 gccgtcgtcgacctcgccgccct 19336171
>dbj|AK121092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066P11, full insert sequence Length = 2037 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 306 gccgtcgtcgacctcgccgccct 328 ||||||||||||||||||||||| Sbjct: 517 gccgtcgtcgacctcgccgccct 539
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 gccgtcgtcgacctcgccgccct 328 ||||||||||||||||||||||| Sbjct: 19347469 gccgtcgtcgacctcgccgccct 19347447
>ref|XM_468176.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3248 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 tgccgccgacgacttcctccgg 41 |||||||||||||||||||||| Sbjct: 2883 tgccgccgacgacttcctccgg 2862
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 cgtcacggcgaccaacgcatcccacg 195 ||||| |||||||||||||||||||| Sbjct: 285909 cgtcagggcgaccaacgcatcccacg 285884
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 tgccgccgacgacttcctccgg 41 |||||||||||||||||||||| Sbjct: 68997 tgccgccgacgacttcctccgg 68976
>dbj|AK072337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043H01, full insert sequence Length = 3406 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 tgccgccgacgacttcctccgg 41 |||||||||||||||||||||| Sbjct: 3041 tgccgccgacgacttcctccgg 3020
>dbj|AK071978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I16, full insert sequence Length = 3248 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 tgccgccgacgacttcctccgg 41 |||||||||||||||||||||| Sbjct: 2882 tgccgccgacgacttcctccgg 2861
>ref|XM_323041.1| Neurospora crassa OR74A hypothetical protein ( (AL513467) conserved hypothetical protein [Neurospora crassa OR74A] ) (NCU03740.1) partial mRNA Length = 2826 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 cgccgtcgtcgacctcgccgc 325 ||||||||||||||||||||| Sbjct: 191 cgccgtcgtcgacctcgccgc 211
>ref|XM_956423.1| Neurospora crassa OR74A hypothetical protein ( (AL513467) conserved hypothetical protein [Neurospora crassa OR74A] ) (NCU03740.1) partial mRNA Length = 2826 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 cgccgtcgtcgacctcgccgc 325 ||||||||||||||||||||| Sbjct: 191 cgccgtcgtcgacctcgccgc 211
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 307 ccgtcgtcgacctcgccgccctccg 331 ||||||||||||| ||||||||||| Sbjct: 22489440 ccgtcgtcgaccttgccgccctccg 22489464
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 314 cgacctcgccgccctccgctccgtgcgcg 342 ||||||||||||||||||| || |||||| Sbjct: 5718351 cgacctcgccgccctccgcgccctgcgcg 5718379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 cgacctcgccgccctccgctc 334 ||||||||||||||||||||| Sbjct: 1686481 cgacctcgccgccctccgctc 1686501 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 agggcctctcgttccggtcc 287 |||||||||||||||||||| Sbjct: 1725551 agggcctctcgttccggtcc 1725532
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 307 ccgtcgtcgacctcgccgccctccg 331 ||||||||||||| ||||||||||| Sbjct: 4641 ccgtcgtcgaccttgccgccctccg 4665
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 gaggagttcgccgtcgtcgacctcg 321 |||||||||||||||| |||||||| Sbjct: 22167 gaggagttcgccgtcgacgacctcg 22143
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 gaggagttcgccgtcgtcgacctcg 321 |||||||||||||||| |||||||| Sbjct: 112847 gaggagttcgccgtcgacgacctcg 112823
>dbj|AK065677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035N16, full insert sequence Length = 3828 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 gaggagttcgccgtcgtcgacctcg 321 |||||||||||||||| |||||||| Sbjct: 133 gaggagttcgccgtcgacgacctcg 157
>dbj|AK064211.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E12, full insert sequence Length = 1331 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 307 ccgtcgtcgacctcgccgccctccg 331 ||||||||||||| ||||||||||| Sbjct: 165 ccgtcgtcgaccttgccgccctccg 189
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 299 ggagttcgccgtcgtcgacctcgcc 323 |||||||||||||||||| |||||| Sbjct: 4273172 ggagttcgccgtcgtcgatctcgcc 4273196
>emb|AL513467.1|NC17E5 Neurospora crassa DNA linkage group V Cosmid contig 17E5 Length = 130049 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 cgccgtcgtcgacctcgccgc 325 ||||||||||||||||||||| Sbjct: 18041 cgccgtcgtcgacctcgccgc 18021
>ref|XM_493828.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3284 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 cgacctcgccgccctccgctccgt 337 ||||||||||||||||||| |||| Sbjct: 334 cgacctcgccgccctccgcaccgt 311
>ref|XM_363202.1| Magnaporthe grisea 70-15 hypothetical protein (MG08786.4) partial cds Length = 1656 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 cgtgcgcagcggcgggcacg 261 |||||||||||||||||||| Sbjct: 449 cgtgcgcagcggcgggcacg 468
>gb|DQ279927.1| Human herpesvirus 4 strain AG876, complete genome Length = 172764 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcacgactacgagggcctct 276 |||||||||||||||||||| Sbjct: 135828 gcacgactacgagggcctct 135809
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 cgacctcgccgccctccgctccgt 337 ||||||||||||||||||| |||| Sbjct: 9613552 cgacctcgccgccctccgcaccgt 9613575
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 cgacctcgccgccctccgctccgt 337 ||||||||||||||||||| |||| Sbjct: 34451 cgacctcgccgccctccgcaccgt 34474
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgaggagttcgccgtcgtcg 315 |||||||||||||||||||| Sbjct: 1790167 cgaggagttcgccgtcgtcg 1790148
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 282 cggtccgcgcggcccgaggagttcgccg 309 |||| |||||||||||||||| |||||| Sbjct: 125677 cggtacgcgcggcccgaggagatcgccg 125650
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cacggcgaccaacgcatcccacgt 196 ||||| |||||||||||||||||| Sbjct: 1198584 cacggtgaccaacgcatcccacgt 1198607
>gb|AF363310.1| Polycope sp. OC-2001 18S ribosomal RNA gene, partial sequence Length = 1818 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ggagctcgccgtcgttcgcg 101 |||||||||||||||||||| Sbjct: 1352 ggagctcgccgtcgttcgcg 1371
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gtcgacctcgccgccctccg 331 |||||||||||||||||||| Sbjct: 302181 gtcgacctcgccgccctccg 302162
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gagctgtaccacgccatcgg 415 |||||||||||||||||||| Sbjct: 1227850 gagctgtaccacgccatcgg 1227869
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cgccgtcgtcgacctcgccg 324 |||||||||||||||||||| Sbjct: 20032950 cgccgtcgtcgacctcgccg 20032931 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gccgtcgtctgcggccgccg 223 |||||||||||||||||||| Sbjct: 3115361 gccgtcgtctgcggccgccg 3115342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 cgacctcgccgccctccgctccgt 337 ||||||||||||||||||| |||| Sbjct: 9611673 cgacctcgccgccctccgcaccgt 9611696
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 aggagttcgccgtcgtcgacctcg 321 |||||||||||||||| ||||||| Sbjct: 916081 aggagttcgccgtcgtagacctcg 916058
>dbj|AK110067.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-E04, full insert sequence Length = 3077 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cgccgtcgtcgacctcgccg 324 |||||||||||||||||||| Sbjct: 519 cgccgtcgtcgacctcgccg 538
>gb|AY037858.1| Cercopithicine herpesvirus 15 strain LCL8664, complete genome Length = 171096 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcacgactacgagggcctct 276 |||||||||||||||||||| Sbjct: 128940 gcacgactacgagggcctct 128921
>dbj|AK070260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045A10, full insert sequence Length = 2729 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 cgacctcgccgccctccgctccgt 337 ||||||||||||||||||| |||| Sbjct: 527 cgacctcgccgccctccgcaccgt 504
>emb|V01555.2|EBV Epstein-Barr virus (EBV) genome, strain B95-8 Length = 172281 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcacgactacgagggcctct 276 |||||||||||||||||||| Sbjct: 147290 gcacgactacgagggcctct 147271
>gb|AY961628.3| Human herpesvirus 4 strain GD1, complete genome Length = 171657 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcacgactacgagggcctct 276 |||||||||||||||||||| Sbjct: 134920 gcacgactacgagggcctct 134901
>emb|AJ507799.2|HHV507799 Human herpesvirus 4 complete wild type genome Length = 171823 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcacgactacgagggcctct 276 |||||||||||||||||||| Sbjct: 135001 gcacgactacgagggcctct 134982
>gb|DQ231522.1| Zea mays molybdenum cofactor biosynthesis protein (Vp10) gene, complete cds Length = 10034 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 cggcacggcgtgcgcctccgcgtg 245 |||||||||||||| ||||||||| Sbjct: 4340 cggcacggcgtgcggctccgcgtg 4317
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cgccgtcgtcgacctcgccg 324 |||||||||||||||||||| Sbjct: 19959164 cgccgtcgtcgacctcgccg 19959145 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gccgtcgtctgcggccgccg 223 |||||||||||||||||||| Sbjct: 3115306 gccgtcgtctgcggccgccg 3115287
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgtcgtctgcggccgccg 223 |||||||||||||||||||| Sbjct: 39482 gccgtcgtctgcggccgccg 39501
>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 99791 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cgccgtcgtcgacctcgccg 324 |||||||||||||||||||| Sbjct: 13112 cgccgtcgtcgacctcgccg 13093
>gb|M80517.1|HS4B958RAJ Epstein-Barr virus, artifactual joining of B95-8 complete genome and the sequences from Raji of the large deletion found in B95-8 Length = 184113 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcacgactacgagggcctct 276 |||||||||||||||||||| Sbjct: 147291 gcacgactacgagggcctct 147272 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,980,458 Number of Sequences: 3902068 Number of extensions: 1980458 Number of successful extensions: 44711 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42371 Number of HSP's gapped (non-prelim): 2328 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
