ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59e12 |
|---|---|
| Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 45.1 bits (105), Expect = 7e-05 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 393 N+T +L AG + F+ + ST QAN ++ G T+F P D+AF + K L++L Sbjct: 46 NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105 Query: 394 SQQDQVTLVQAH 429 ++ LV H Sbjct: 106 TKDQLKQLVLFH 117
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 43.1 bits (100), Expect = 3e-04 Identities = 28/76 (36%), Positives = 42/76 (55%) Frame = +1 Query: 202 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 381 A+ N+T +LEKAG T F L+ S+ L + + G TVFAP+D AF + Sbjct: 185 ASLSNITGLLEKAGCKT-FANLLVSSGV---LKTYESAVEKGLTVFAPSDEAFKAEGVPD 240 Query: 382 LNSLSQQDQVTLVQAH 429 L L+Q + V+L++ H Sbjct: 241 LTKLTQAEVVSLLEYH 256
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 42.4 bits (98), Expect = 5e-04 Identities = 27/76 (35%), Positives = 42/76 (55%) Frame = +1 Query: 202 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 381 A N+T +LEKAG T F L+ S+ + + + G TVFAP+D AF + Sbjct: 186 AGVSNITGLLEKAGCKT-FANLLVSSGV---IKTFESTVEKGLTVFAPSDEAFKARGVPD 241 Query: 382 LNSLSQQDQVTLVQAH 429 L +L+Q + V+L++ H Sbjct: 242 LTNLTQAEVVSLLEYH 257
>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog| Length = 133 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/48 (45%), Positives = 28/48 (58%) Frame = +1 Query: 256 FIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 399 F L+A+ Q + A E D FTVFAP D+AF L PGT+ +L Q Sbjct: 14 FSTLVAAVQAAGLVETLAGEGD--FTVFAPNDDAFAKLPPGTIQTLVQ 59
>Y1735_SYNY3 (P73392) Hypothetical protein sll1735| Length = 133 Score = 36.6 bits (83), Expect = 0.027 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +1 Query: 313 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 399 +S FTVFAPTD AF L PGT+ +L Q Sbjct: 31 QSPGPFTVFAPTDTAFAKLPPGTITTLVQ 59
>Y1483_SYNY3 (P74615) Hypothetical protein sll1483 precursor| Length = 180 Score = 36.6 bits (83), Expect = 0.027 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = +1 Query: 202 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 381 AA + ++E A F L+A+ + + A + E FTVFAPT++AF +L GT Sbjct: 40 AATDSAMTIVEVAAGNETFSTLVAAVKAADLVEALSAEGP--FTVFAPTNDAFAALPAGT 97 Query: 382 LNSL 393 + SL Sbjct: 98 VESL 101
>BGH3_RABIT (Q95215) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 33.5 bits (75), Expect = 0.22 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +1 Query: 328 FTVFAPTDNAFNSLKPGTLNSL 393 +TVFAPT+ AF +L PG LN L Sbjct: 537 YTVFAPTNEAFQALPPGELNKL 558
>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)| [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan receptor for endocytosis)] (Fragment) Length = 1431 Score = 33.5 bits (75), Expect = 0.22 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES-DTGFTVFAPTDNAFNSLKPGTLNS 390 N+T V G YTKF +L+ QD+ L + +S T TVF PTD A +L P + Sbjct: 607 NLTTVAANHG-YTKFSKLI----QDSGLLSVITDSIHTPVTVFWPTDKALEALPPEQQDF 661 Query: 391 LSQQD 405 L QD Sbjct: 662 LFNQD 666
>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like| laminin-type EGF-like and link domain-containing scavenger receptor 1) (FAS1 EGF-like and X-link domain-containing adhesion molecule 2) (Hyaluronan receptor for endocytosis) [ Length = 2551 Score = 33.1 bits (74), Expect = 0.29 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = +1 Query: 244 QYTKFIRLMASTQQDTQLNAQANESDTG--FTVFAPTDNAFNSLKPGTLNSL 393 +Y+KF L+ ++T L +E G +T+F P + A N++K GTL+ L Sbjct: 527 RYSKFRSLL----EETNLGHALDEDGVGGPYTIFVPNNEALNNMKDGTLDYL 574
>MP70_MYCTU (P0A668) Immunogenic protein MPT70 precursor| Length = 193 Score = 32.3 bits (72), Expect = 0.50 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Frame = +1 Query: 292 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 393 QLN Q N DT +TVFAPT+ AF+ L T++ L Sbjct: 80 QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDEL 117
>MP70_MYCBO (P0A669) Immunogenic protein MPB70 precursor| Length = 193 Score = 32.3 bits (72), Expect = 0.50 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Frame = +1 Query: 292 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 393 QLN Q N DT +TVFAPT+ AF+ L T++ L Sbjct: 80 QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDEL 117
>MP70_MYCKA (Q49614) Immunogenic protein MPT70 analog precursor (Fragment)| Length = 121 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +1 Query: 292 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 393 +LN Q N DT +TVFAPTD AF+ L T+ L Sbjct: 78 RLNPQVNLVDTLNNGQYTVFAPTDPAFDKLPASTIVQL 115
>CROC_DROME (P32027) Fork head domain protein crocodile (FKH protein FD1)| Length = 508 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = +3 Query: 246 VHQVHPADGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAGPGDARAG 425 +H VH A AA H A++ + V H H + P Q +GH ++ G A G Sbjct: 295 MHHVHHA----AAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG 350
>BGH3_MOUSE (P82198) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) Length = 683 Score = 30.0 bits (66), Expect = 2.5 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = +1 Query: 211 PNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNS 390 P + V++ +F L+A+ Q + E +TVFAPT+ AF ++ P LN Sbjct: 500 PPMGTVMDVLKGDNRFSMLVAAIQSAGLMEILNREGV--YTVFAPTNEAFQAMPPEELNK 557 Query: 391 L 393 L Sbjct: 558 L 558 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 313 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQA 426 E FT+FAP++ A++SL L+SL + L+ A Sbjct: 133 EGPGSFTIFAPSNEAWSSLPAEVLDSLVSNVNIELLNA 170 Score = 28.5 bits (62), Expect = 7.2 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 393 N+ ++E + +A++ +T L E D FT+ APT+ AF + TLN + Sbjct: 242 NIQQIIEIEDTFETLRAAVAASGLNTVL-----EGDGQFTLLAPTNEAFEKIPAETLNRI 296
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 29.3 bits (64), Expect = 4.2 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 393 NVTA E G Y F RL+ L + S FT+ PTD+A +L P N L Sbjct: 1728 NVTAAAESFG-YKIFSRLLTVAGLLPMLQ---DASHRPFTMLWPTDSALQALPPDRKNWL 1783 Query: 394 SQQD 405 +D Sbjct: 1784 FHED 1787
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = +3 Query: 267 DGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAG 404 +G D G E AG GHG +P + QQPQ AAG Sbjct: 140 EGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAG 185
>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]| Length = 2559 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 393 N+T V G YTKF +L+ Q L + T T+F PTD A +L + L Sbjct: 1750 NLTTVAANHG-YTKFSKLI---QDSGLLKVITDPMHTPVTLFWPTDKALQALPQEQQDFL 1805 Query: 394 SQQDQVTLVQAH 429 +D ++A+ Sbjct: 1806 FNEDNKDKLKAY 1817
>MP83_MYCTU (P0A670) Cell surface lipoprotein MPT83 precursor (Lipoprotein p23)| Length = 220 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +1 Query: 292 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 393 +LN N DT +TVFAPT+ AF+ L T++ L Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQL 143
>MP83_MYCBO (P0A671) Cell surface lipoprotein MPB83 precursor (Lipoprotein p23)| Length = 220 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +1 Query: 292 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 393 +LN N DT +TVFAPT+ AF+ L T++ L Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQL 143
>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)| Length = 162 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Frame = -1 Query: 428 CACTSVTWSCCESELRVPGLRLLKALS-VGANTVKPVSDSLACAFSCVSCCVD 273 C C S T +CC+S+ + + KPV C +CC D Sbjct: 80 CCCVSKTNNCCKSDTKECCTGTGEGCKCTSCQCCKPVQQGCCCGDKAKACCTD 132
>BGH3_PIG (O11780) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 313 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQA 426 E FT+FAP++ A+ SL L+SL + L+ A Sbjct: 133 EGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNA 170
>BGH3_HUMAN (Q15582) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 313 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQA 426 E FT+FAP++ A+ SL L+SL + L+ A Sbjct: 133 EGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNA 170
>PSPA_SHIFL (P0AFM8) Phage shock protein A| Length = 221 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES 318 N+ A+LEKA K +RLM +DT + ++ + Sbjct: 13 NINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSA 47
>PSPA_ECOLI (P0AFM6) Phage shock protein A| Length = 221 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES 318 N+ A+LEKA K +RLM +DT + ++ + Sbjct: 13 NINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSA 47
>PSPA_ECO57 (P0AFM7) Phage shock protein A| Length = 221 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 214 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES 318 N+ A+LEKA K +RLM +DT + ++ + Sbjct: 13 NINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSA 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.123 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,928,064 Number of Sequences: 219361 Number of extensions: 377747 Number of successful extensions: 1698 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1695 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
