>CLA4_ASHGO (Q9HFW2) Serine/threonine-protein kinase CLA4 (EC 2.7.11.1)|
          Length = 793

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   RPGAPSAVPRC--PPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLP 179
           RPG P+A+ +   PP +A  +L P    KK   AP G P+A A+  K+  P   + + + 
Sbjct: 427 RPGGPNAMKQQHGPPAAASGQLGPDS--KKPEGAP-GHPTAVAKKKKAGRPTMSNAEIMT 483

Query: 180 RLA 188
           RLA
Sbjct: 484 RLA 486

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +3

Query: 9   PGAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVS 158
           PGAP A P    P   R  PPR G+     AP G P      V   + +S
Sbjct: 114 PGAPPAAPTRASPLGARASPPRSGVSLARPAP-GCPRPACEPVYGPLTMS 162

>IF2_SYNY3 (P72689) Translation initiation factor IF-2|
          Length = 1001

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
 Frame = +3

Query: 15  APSAVPRCPPP------SADRELPPRDGIKKLHRAPR--GRPSATARAVKSSVPVSCSTK 170
           AP   P  PPP         +  PP    KK   APR  G P  TA   K++VP     K
Sbjct: 145 APPTQPLAPPPVPSLQSPPSKPAPPTPPAKKAAPAPRLAGPPGRTASPNKTAVPAPAKPK 204

>BLAA_STRCI (P33651) HTH-type transcriptional regulator blaA (Beta-lactamase|
           regulatory protein blaA)
          Length = 326

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 18  PSAVP--RCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLPRLAL 191
           PS  P  R   P+A R +   D ++   RA R RP      ++ +VP SC+T  L RL  
Sbjct: 56  PSLTPFGRDMLPAARRLVRVADVLEDEARAARSRP------MRLAVPASCTTAELARLVA 109

Query: 192 HFCSRSCRLCV 224
               R  RL V
Sbjct: 110 DSRERDIRLDV 120

>HMGYB_SOYBN (Q10370) HMG-Y-related protein B (SB16B protein) (Fragment)|
          Length = 152

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +3

Query: 12  GAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCST 167
           G P   P  PP S   +  P  G       PRGRP   AR+     P + ST
Sbjct: 86  GRPPKDPNAPPKSPKAKATPATG------RPRGRPKKVARSPAVPSPTAVST 131

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 15  APSAVPRCPPPSADRELPPRDGIKKLHR-----APRGRPSATARAVKSSVP 152
           AP+ VP+ PPP   +  PP    ++  +      P   P  TA A+KSS P
Sbjct: 750 APAPVPQQPPPPPQQPPPPPPPQQQQQQPPPPPPPPSMPQQTAPAMKSSPP 800

>NHR22_CAEEL (Q09587) Nuclear hormone receptor family member nhr-22|
          Length = 579

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 42  PPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLPRL-ALHFCSRSCRL 218
           PP     LP  + + K   +PRG PS    +       SC   S P    LHF  RSC+ 
Sbjct: 65  PPPESNHLP--EIVNKASTSPRGMPSPLTDSR------SCHVCSSPTANTLHFGGRSCKA 116

Query: 219 C 221
           C
Sbjct: 117 C 117

>M3KL4_HUMAN (Q5TCX8) Mitogen-activated protein kinase kinase kinase (EC|
            2.7.11.25) (Mixed lineage kinase 4)
          Length = 1036

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 21   SAVPRCPPPSADRELPPRDGIKK---LHRAPRGRPSATARAVKSSVPVSCSTKSLPRLAL 191
            SA+P CP P+    LP     KK   +H  P+ RP++     +S +P +    ++ +LA 
Sbjct: 913  SALPLCPSPAPHSHLPREVSPKKHSTVHIVPQRRPASLRS--RSDLPQAYPQTAVSQLAQ 970

Query: 192  HFC 200
              C
Sbjct: 971  TAC 973

>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
           (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
           4) (Histone acetyltransferase MOZ2) (Monocytic leukemia
           zinc finger protein-related factor) (Histone
           acetyltransferas
          Length = 2073

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 3   GRPGAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCST 167
           G PG       C  PS+      +D   +L      RP AT +   +S  +S ST
Sbjct: 370 GSPGRGQKTKVCTTPSSGHAASGKDSSSRLAVTDPTRPGATTKITTTSTYISAST 424

>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +3

Query: 15  APSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLPRLAL 191
           AP A+P  PP      LPPR        AP  RP   A A  ++   S S+ S P  AL
Sbjct: 421 APPALPALPP------LPPR--------APSSRPGEGAPAAAAAAGCSASSASSPGPAL 465

>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 39   PPPSADRE---LPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLP 179
            PP +   E   +PPR     LH  P   P A ARA + +VP+     + P
Sbjct: 6271 PPVTGTSEAPAVPPRVPQPLLHEGPEQEPEAIARAQEWTVPIRMEGAAWP 6320

>HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)|
          Length = 176

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 12  GAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCST 167
           G P   P  PP S   +  P  G       PRGRP    R+   + P + S+
Sbjct: 110 GRPPKDPNAPPKSPKAKATPGSG------RPRGRPKKVPRSPAVAAPTAVSS 155

>H13_GLYBA (P40265) Histone H1-III|
          Length = 228

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 9   PGAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKS 143
           P   SAVP   P  A +E  P+    K  +APR  P  +   V +
Sbjct: 6   PEVASAVPVASPAKAKKEKKPKTDKPKKAKAPRTHPPVSEMVVNA 50

>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 15  APSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLPR 182
           AP+A P    P   R  PPR G+    R   G P      V    P++ S K  P+
Sbjct: 105 APAATPARACPPGVRASPPRSGVSSSARPAPGCPRPACEPVYG--PLTMSLKPQPQ 158

>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 3   GRPGAPS-AVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCS 164
           GRP AP  A PR   PS  +  P +       RA   RPSA  +A  +  P + S
Sbjct: 61  GRPAAPKKAAPRPSAPSPAQAGPSQAAPAAGDRAAAPRPSAAPKAPAAQQPAAPS 115

>ATG26_LEPMC (Q8NJS1) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26) (UDP-glycosyltransferase
           51)
          Length = 1456

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 3   GRPGAPSAVPRCPPPSADRELPPRDGI---KKLHRAPRGRPSATARAVKSSVPVSCSTK 170
           G   AP++ P  PPP+A   + P DGI   K  + A + R  + A A     PVS + +
Sbjct: 181 GSMPAPASSP--PPPAAKGRVRPGDGIQMEKGRNVARKTRQRSPAAAATGEAPVSLAKR 237

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 6   RPGAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCS---TKSL 176
           +P   S +   PP S DR+L  RD  K    +P   P+A A   +++ P   S   TKS 
Sbjct: 685 KPVVRSRIDTKPPKSMDRKLAKRDEKKS---SPTTTPAARAPVAQNAKPKVLSRPATKSS 741

Query: 177 P 179
           P
Sbjct: 742 P 742

>RL2_CHLCV (Q824P8) 50S ribosomal protein L2|
          Length = 284

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +2

Query: 2   WSPGCPVCRATVSAPIG*SRAPATGRHQEVAPRPPW 109
           W    P  R T   P+        GRH    PR PW
Sbjct: 224 WKGVRPTVRGTAMNPVDHPHGGGEGRHNGYIPRTPW 259

>FBS1_MOUSE (Q60791) Fibrosin-1 (Fragment)|
          Length = 71

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 12  GAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKS-LPRLA 188
           G+ S  P+CPPP     LPP     K    PR     T       + VSC+  S LP++ 
Sbjct: 12  GSLSQRPKCPPPF---RLPP-----KFSCPPRAEEGGT-----KGIGVSCTYLSPLPQIP 58

Query: 189 LHFCS 203
             FC+
Sbjct: 59  QTFCT 63

>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52|
          Length = 435

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 15  APSAVPRCPPPSADRELPPRD 77
           APS VPR  PP   R  PP+D
Sbjct: 261 APSGVPRPAPPPPPRAWPPQD 281

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 15  APSAVPRCPPPSADRELPPRDGIKKLH----RAPRGRPSATARAVKSSVPVSCSTK 170
           AP+ VP+ PPP   +  PP    ++        P   P   A A+KSS P   +T+
Sbjct: 749 APAPVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQ 804

>STRR_STRGR (P08076) Streptomycin biosynthesis operon possible regulatory|
           protein
          Length = 350

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 12  GAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKS 173
           G P +  R       R L P +G K   R  +  PSA+ R + +   VS ST S
Sbjct: 169 GVPQSNVRIGRDGRARPLDPTEGRKLASRLLQENPSASLRQIAAQAGVSPSTAS 222

>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1114

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 21  SAVPRCPPPSADRELPPRDGIKKLHRAPRG 110
           SA+P    P+A R+LPP    K++   PRG
Sbjct: 548 SALPVNAHPAASRDLPPLPVSKQIQMVPRG 577

>LNT1_TREPA (O83279) Apolipoprotein N-acyltransferase 1 (EC 2.3.1.-) (ALP|
           N-acyltransferase 1)
          Length = 546

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 126 ARAVKSSVPVSCSTKSLPRLALHFCSRSCRLCVNLS 233
           AR +K SVP+ C   +   +   FC+R   L VN+S
Sbjct: 403 ARGLKFSVPI-CFEDAFGYITREFCARGASLLVNIS 437

>GROU_DROME (P16371) Protein groucho (Enhancer of split m9/10 protein)|
           (E(spl)m9/10)
          Length = 719

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 6   RPGAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSA 122
           +PG P A  R P P+A     P  G+      P+G P A
Sbjct: 305 KPGTPGAKARTPTPNA---AAPAPGVNPKQMMPQGPPPA 340

>GLT12_MOUSE (Q8BGT9) Polypeptide N-acetylgalactosaminyltransferase 12 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           12) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 12) (Polypeptide
           GalNAc transferase 12) (GalNAc-T12) (pp-GaNTas
          Length = 576

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 50  G*SRAPATGRHQEVAPRPP 106
           G  R P  GRH+ V PRPP
Sbjct: 46  GPPRTPLPGRHEPVLPRPP 64

>CD5R2_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precursor (CDK5|
           activator 2) (Cyclin-dependent kinase 5 regulatory
           subunit 2) (P39) (P39I)
          Length = 369

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 24/75 (32%), Positives = 27/75 (36%)
 Frame = +3

Query: 9   PGAPSAVPRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLPRLA 188
           PG+    P  PPP A +  PP  G      +PR             V V  ST  L R  
Sbjct: 148 PGSGGGKPPPPPPPAPQAAPPAPG-----SSPR------------RVIVQASTGELLRCL 190

Query: 189 LHFCSRSCRLCVNLS 233
             F  RSC     LS
Sbjct: 191 RDFVCRSCYRLKELS 205

>TFCP2_CHICK (Q7T2U9) Transcription factor CP2|
          Length = 496

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 12  GAPSAVPRCPPPSADRELP---PRDGIKKLHR 98
           G+P+  P  PPP AD  LP   P++  + LHR
Sbjct: 308 GSPNHQPEPPPPIADNLLPTSTPQEAQQWLHR 339

>RL2_CHLPN (Q9Z7R0) 50S ribosomal protein L2|
          Length = 284

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +2

Query: 2   WSPGCPVCRATVSAPIG*SRAPATGRHQEVAPRPPW 109
           W    P  R T   P+        GRH    PR PW
Sbjct: 224 WMGVRPTVRGTAMNPVDHPHGGGEGRHNGYIPRTPW 259

>H12_VOLCA (Q08865) Histone H1-II|
          Length = 240

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 30  PRCPPPSADRELPPRDGIKKLHRAPRGRPSATARAVKSSVPVSCSTKSLPRLA 188
           P    P+A +  P +    K   AP+   +AT +  K++ P      + P+ A
Sbjct: 171 PAAKKPAAKKATPKKAAAPKKAAAPKKAKAATPKKAKAATPKKAKAAAKPKAA 223

>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   GRPGAPSAVPRCPPPSADR 59
           GRP AP   P  PPPS++R
Sbjct: 199 GRPWAPLTGPSVPPPSSER 217

>MCLN1_MOUSE (Q99J21) Mucolipin-1 (Mucolipidin)|
          Length = 580

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 221 CESFCCCNREQGEEH 265
           C  FCCC R+  E+H
Sbjct: 561 CSLFCCCGRDSPEDH 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,198,625
Number of Sequences: 219361
Number of extensions: 678777
Number of successful extensions: 3438
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3412
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)