ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59c11 |
|---|---|
| Clone Library Name | barley_pub |
>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 242 bits (617), Expect(2) = 2e-66 Identities = 125/141 (88%), Positives = 126/141 (89%) Frame = +3 Query: 3 SMAQAAAALWNKASTLXXXXXXXXXXXXXXXMLRANDPVKQAVATLAVAVCEAARFSPVS 182 SMAQAAAALWNKASTL MLRANDPVKQAVATLAVAVCEAARFSPVS Sbjct: 150 SMAQAAAALWNKASTLSGGIGSDVVDDDDGDMLRANDPVKQAVATLAVAVCEAARFSPVS 209 Query: 183 KVVNAGWIKDKVSVTPDEVNYIKEWGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEE 362 KVVNAGWIKDKVSVTPDEVNYIKEWGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEE Sbjct: 210 KVVNAGWIKDKVSVTPDEVNYIKEWGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEE 269 Query: 363 ALAVVRLMKLVIRSNMAAAPT 425 ALAVVRL+KLVIRSNMAAAPT Sbjct: 270 ALAVVRLVKLVIRSNMAAAPT 290 Score = 30.0 bits (66), Expect(2) = 2e-66 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = +2 Query: 419 PDTDEQLLAYAQLP 460 P TDEQLLAYAQLP Sbjct: 289 PTTDEQLLAYAQLP 302
>RIPX_MAIZE (P28522) Ribosome-inactivating protein precursor (EC 3.2.2.22)| (rRNA N-glycosidase) [Contains: Ribosome-inactivating protein alpha chain; Ribosome-inactivating protein beta chain] Length = 301 Score = 48.1 bits (113), Expect = 1e-05 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Frame = +3 Query: 105 ANDP---VKQAVATLAVAVCEAARFSPVSKVVNAGW-IKDKVSVTPDEVNYIKEWGDLST 272 A DP K + L V VCE RF+ VS+ V+AG+ + V++T + +++W +S Sbjct: 187 AADPQADTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISK 246 Query: 273 ALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLMKLVIRSNMAAAPTPTSS 437 A W D + +GI + EA +V L+K AAA T S+ Sbjct: 247 AAFEWAD----HPTAVIPDMQKLGIKDKNEAARIVALVK---NQTTAAAATAASA 294
>RIP9_MAIZE (P25892) Ribosome-inactivating protein 9 (EC 3.2.2.22) (rRNA| N-glycosidase) (B-32 protein) Length = 304 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Frame = +3 Query: 105 ANDP---VKQAVATLAVAVCEAARFSPVSKVVNAGW-IKDKVSVTPDEVNYIKEWGDLST 272 A DP K + L V VCE RF+ VS+ V+AG+ + V++T + +++W +S Sbjct: 188 AADPQADTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISK 247 Query: 273 ALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLMKLVIRSNMAAA 419 A W D + +GI + EA +V L+K + AAA Sbjct: 248 AAFEWAD----HPTAVIPDMQKLGIKDKNEAARIVALVKNQTTAAAAAA 292
>ALB3_MAIZE (P10593) Albumin b-32 protein (EC 3.2.2.22) (Opaque-6 protein)| (rRNA N-glycosidase) Length = 303 Score = 46.2 bits (108), Expect = 4e-05 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Frame = +3 Query: 105 ANDP---VKQAVATLAVAVCEAARFSPVSKVVNAGW-IKDKVSVTPDEVNYIKEWGDLST 272 A DP K + L V VCE RF+ +S+ V+AG+ + V++T + +++W +S Sbjct: 187 AADPQADTKSKLVKLVVMVCEGLRFNTLSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISK 246 Query: 273 ALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLMKLVIRSNMAAA 419 A W D + +GI + EA +V L+K + AAA Sbjct: 247 AAFEWAD----HPTAVIPDMQKLGIKDKNEAARIVALVKNQTTAAAAAA 291
>RIP3_MAIZE (P25891) Ribosome-inactivating protein 3 (rRNA N-glycosidase) (EC| 3.2.2.22) (B-32 protein) Length = 300 Score = 46.2 bits (108), Expect = 4e-05 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Frame = +3 Query: 105 ANDP---VKQAVATLAVAVCEAARFSPVSKVVNAGW-IKDKVSVTPDEVNYIKEWGDLST 272 A DP K + L V VCE RF+ VS+ V+AG+ + V++T + +++W +S Sbjct: 187 AADPQADTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQGKQVQKWDRISK 246 Query: 273 ALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLMK 389 A W D + +GI + EA +V L+K Sbjct: 247 AAFEWAD----HPTAVIPDMQKLGIKDKNEAARIVALVK 281
>SYT_RICFE (Q4UKU3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 635 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/99 (23%), Positives = 56/99 (56%), Gaps = 1/99 (1%) Frame = +3 Query: 114 PVKQAVATLAVAVCEAARFSPVSKVVNAGWIKDKVSVTPDEVNY-IKEWGDLSTALLSWM 290 P++ A+AT+ + + A V K + ++ ++++PD++NY I+E+ + +++ + Sbjct: 538 PIQVAIATITSDLNDYAL--EVQKALIDNGVRTDINISPDKINYKIREFSNQKIPMIAVI 595 Query: 291 DKQYKDDATIFKKFNGIGITNGEEALAVVRLMKLVIRSN 407 KQ K++ + + G T +E L++ +L+ L+ + N Sbjct: 596 GKQEKENKHVTIRRLG---TTDQEVLSIEQLIALIKKEN 631
>SYT_RICTY (Q68XE8) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 635 Score = 35.4 bits (80), Expect = 0.073 Identities = 24/100 (24%), Positives = 57/100 (57%), Gaps = 2/100 (2%) Frame = +3 Query: 114 PVKQAVATLAVAVCEAARFSPVSKVVNAGWIKDKVSVTPDEVNY-IKEWGDLSTALLSWM 290 PV+ A+AT+ + + A V K + I+ ++++PD++NY I+E+ + +++ + Sbjct: 538 PVQVAIATITNDLNDYAL--EVQKTLIDNNIRTDINISPDKINYKIREFSNQKIPMIAVI 595 Query: 291 DKQYKDDATI-FKKFNGIGITNGEEALAVVRLMKLVIRSN 407 K+ + + + +KF T G+E L++ +L+ ++ + N Sbjct: 596 GKKEQANKQVTIRKFG----TTGQEILSIEQLIAMIKKEN 631
>IDHP_MOUSE (P54071) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 523 Score = 32.7 bits (73), Expect = 0.47 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +2 Query: 287 DGQAIQGRCNHFQKIQWYRDNQRGR---SLGCGAAYEASHPKQHGGRPDTDEQLLAYAQ 454 DG+ I+ H + YR++Q+GR + G + + + +H G+ D ++ L+ +AQ Sbjct: 410 DGKTIEAEAAHGTVTRHYREHQKGRPTSTKGIASIFAWTRGLEHRGKLDGNQDLIRFAQ 468
>SYT_RICPR (O05947) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 635 Score = 32.0 bits (71), Expect = 0.81 Identities = 22/99 (22%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Frame = +3 Query: 114 PVKQAVATLAVAVCEAARFSPVSKVVNAGWIKDKVSVTPDEVNY-IKEWGDLSTALLSWM 290 PV+ A+AT+ + + A V K + ++ ++++PD++NY I+E+ + +++ + Sbjct: 538 PVQVAIATITNDLNDYAL--EVQKTLIDNGVRTDINISPDKINYKIREFSNQKIPIIAVI 595 Query: 291 DKQYKDDATIFKKFNGIGITNGEEALAVVRLMKLVIRSN 407 KQ + + + + G T +E L++ +L+ ++ + N Sbjct: 596 GKQEQANKQVTIRKLG---TIEQEILSIEQLIAMIKKEN 631
>IDHP_HUMAN (P48735) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 452 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = +2 Query: 287 DGQAIQGRCNHFQKIQWYRDNQRGRSLG---CGAAYEASHPKQHGGRPDTDEQLLAYAQL 457 DG+ I+ H + YR++Q+GR + + + +H G+ D ++ L+ +AQ+ Sbjct: 338 DGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQM 397
>IDHP_BOVIN (Q04467) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 452 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +2 Query: 287 DGQAIQGRCNHFQKIQWYRDNQRGRSLG---CGAAYEASHPKQHGGRPDTDEQLLAYAQ 454 DG+ I+ H + YR++Q+GR + + + +H G+ D ++ L+ +AQ Sbjct: 338 DGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQ 396
>IDHP_PIG (P33198) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) (Fragment) Length = 421 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +2 Query: 287 DGQAIQGRCNHFQKIQWYRDNQRGRSLG---CGAAYEASHPKQHGGRPDTDEQLLAYAQ 454 DG+ I+ H + YR++Q+GR + + + +H G+ D ++ L+ +AQ Sbjct: 307 DGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQ 365
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 29.6 bits (65), Expect = 4.0 Identities = 31/91 (34%), Positives = 42/91 (46%) Frame = -3 Query: 394 TSFISRTTAKASSPLVIPIPLNFLKMVASSLYCLSIQLSSAVDKSPHSLM*LTSSGVTDT 215 T+ S T +S PL L+ L V+SS+ SS+ S SL L+ S DT Sbjct: 1313 TAVSSSTFIASSLPLSSKSSLS-LSPVSSSILMSQFSSSSSSSSSLASLPSLSISPTVDT 1371 Query: 214 LSLIQPALTTLETGLNLAASQTATARVATAC 122 +S++QP TT L SQ V+T C Sbjct: 1372 VSVLQP--TTSIATLTCTDSQ-CQQEVSTIC 1399
>PQQB_ACIAD (Q6F9J2) Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone| biosynthesis protein B) Length = 304 Score = 29.3 bits (64), Expect = 5.2 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 23/96 (23%) Frame = +3 Query: 144 VAVCEAARFSPVSKVVNAG-----------------WIKDKVSVTPDEVNYIKEWGDLST 272 VAVCEA RF+PV + NA WI+D + T + Y G + Sbjct: 149 VAVCEAIRFTPVPILSNAPPYSPYRHRPLPGHNIALWIED--TRTGHSLFYAPGLGQMDD 206 Query: 273 ALLSWMDKQ--YKDDATIFK----KFNGIGITNGEE 362 ++LS+M + D T++K G+G G++ Sbjct: 207 SILSYMQRADCLLVDGTLWKDQELALLGVGKNTGQD 242
>FLO9_YEAST (P39712) Flocculation protein FLO9 precursor| Length = 1322 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = -3 Query: 400 RMTSFISRTTAKASSPLVIPI-PLNFLKMVASSLYCLSIQLSSAVDKSPHSLM*LTSSGV 224 ++TSFI+ ++ P++ P P N +++SS+ S S + S S + +TSS V Sbjct: 869 QITSFIT-----SARPIITPFYPSNGTSVISSSVISSSDTSSLVISSSVTSSL-VTSSPV 922 Query: 223 TDTLSLIQPALTTLETGLNLAASQTATARVATACFT 116 + + P +++ T ++ + + ++ + T+ T Sbjct: 923 ISSSFISSPVISSTTTSASILSESSKSSVIPTSSST 958
>EFG_OCEIH (Q8ETY5) Elongation factor G (EF-G)| Length = 692 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 290 HPAEQRGGQVTPLLDVVDLVGCDGYLVLDPTCIDDLGDRAESR 162 HP + G ++DL+ D Y L DDLG R+E+R Sbjct: 160 HPIQMPIGAEDEFHGIIDLITMDAYFYL-----DDLGQRSETR 197
>VIF_SIVMK (P05902) Virion infectivity factor (Vif) (SOR protein) (Q protein)| Length = 214 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 332 QWYRDNQRGRSLGCGAAYEASHPKQHGGRPDT 427 QW RDN+RG + A + KQ GG+P T Sbjct: 170 QWRRDNRRGLRM---AKQNSRGDKQRGGKPPT 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,183,620 Number of Sequences: 219361 Number of extensions: 1113350 Number of successful extensions: 3337 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3330 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
