ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein 882 0.0
2ref|XM_640149.1| Dictyostelium discoideum hypothetical protein (... 42 1.6
3gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, compl... 42 1.6
4gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875... 42 1.6
5emb|BX822321.1|CNS0A7SK Arabidopsis thaliana Full-length cDNA Co... 42 1.6
6gb|AF284037.1| Streptomyces ansochromogenes putative 2-nitroprop... 42 1.6
7gb|AY636066.1| Hypomyces chlorinigenus strain G-10 internal tran... 40 6.3
8gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.3
9gb|DQ205099.1| Human poliovirus 2 clone S2R9, complete genome 40 6.3
10gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7,... 40 6.3
11gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cance... 40 6.3
12emb|BX119965.9| Zebrafish DNA sequence from clone RP71-86I6 in l... 40 6.3
13emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-3... 40 6.3
14gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosom... 40 6.3

>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein
          Length = 1892

 Score =  882 bits (445), Expect = 0.0
 Identities = 457/460 (99%), Gaps = 1/460 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcatggcgcaagcagctgccgcgctctggaacaaggccagtactctctccggtggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttagcatggcgcaagcagctgccgcgctctggaacaaggccagtactctctccggtggta 557

                                                                       
Query: 61  ttggtagcgatgttgtcgacgacgacnacggcgacatgcttcgagccaacgacccggtaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 ttggtagcgatgttgtcgacgacgacgacggcgacatgcttcgagccaacgacccggtaa 617

                                                                       
Query: 121 agcaagcagtggcgaccctcgccgtcgccgtctgcgaggccgcgagattcagccctgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agcaagcagtggcgaccctcgccgtcgccgtctgcgaggccgcgagattcagccctgtct 677

                                                                       
Query: 181 ccaaggtcgtcaatgcaggttggatcaaggacaaggtatccgtcacacccgacgaggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccaaggtcgtcaatgcaggttggatcaaggacaaggtatccgtcacacccgacgaggtca 737

                                                                       
Query: 241 actacatcaaggagtggggtgacttgtccaccgcgctgctcagctggatggacaagcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actacatcaaggagtggggtgacttgtccaccgcgctgctcagctggatggacaagcaat 797

                                                                       
Query: 301 acaaggacgatgcaaccattttcaaaaaattcaatggtatcgggataaccaacggggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acaaggacgatgcaaccattttcaaaaaattcaatggtatcgggataaccaacggggaag 857

                                                                       
Query: 361 aagccttggctgtggtgcggcttatgaagctagtcatccgaagcaacatggcggccgccc 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 858 aagccttggctgtggtgcggcttgtgaagctagtcatccgaagcaacatggcggccgccc 917

                                                   
Query: 421 cgac-accgacgagcagctgctcgcgtacgctcaactacc 459
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 918 cgacaaccgacgagcagctgctcgcgtacgctcaactacc 957



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>ref|XM_640149.1| Dictyostelium discoideum hypothetical protein (DDB0203726), partial
           mRNA
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 315 accattttcaaaaaattcaat 335
           |||||||||||||||||||||
Sbjct: 381 accattttcaaaaaattcaat 401



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>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence
          Length = 268158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 316    ccattttcaaaaaattcaatg 336
              |||||||||||||||||||||
Sbjct: 239503 ccattttcaaaaaattcaatg 239483



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>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
             complete sequence
          Length = 257109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 315   accattttcaaaaaattcaat 335
             |||||||||||||||||||||
Sbjct: 54408 accattttcaaaaaattcaat 54388



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>emb|BX822321.1|CNS0A7SK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB28ZG10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 633

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 298 aatacaaggacgatgcaacca 318
           |||||||||||||||||||||
Sbjct: 230 aatacaaggacgatgcaacca 250



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>gb|AF284037.1| Streptomyces ansochromogenes putative 2-nitropropane dioxygenase
           (2-npdl) gene, complete cds
          Length = 1350

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 138 ctcgccgtcgccgtctgcgaggccg 162
           ||||||| |||||||||||||||||
Sbjct: 259 ctcgccgccgccgtctgcgaggccg 283



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>gb|AY636066.1| Hypomyces chlorinigenus strain G-10 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 532

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 126 gcagtggcgaccctcgccgtcgcc 149
           |||||||||||||||||| |||||
Sbjct: 449 gcagtggcgaccctcgccatcgcc 472



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      cggcgacatgcttcgagcca 108
               ||||||||||||||||||||
Sbjct: 5627830 cggcgacatgcttcgagcca 5627811



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>gb|DQ205099.1| Human poliovirus 2 clone S2R9, complete genome
          Length = 7439

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 173  ccctgtctccaaggtcgtcaatgcaggt 200
            ||||||||||| || |||||||||||||
Sbjct: 2631 ccctgtctccacggccgtcaatgcaggt 2604



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>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence
          Length = 133030

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   ccttggctgtggtgcggctt 383
             ||||||||||||||||||||
Sbjct: 23758 ccttggctgtggtgcggctt 23739



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>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163031

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   ggagtggggtgacttgtcca 270
             ||||||||||||||||||||
Sbjct: 62510 ggagtggggtgacttgtcca 62529



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>emb|BX119965.9| Zebrafish DNA sequence from clone RP71-86I6 in linkage group 14,
             complete sequence
          Length = 135252

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   cattttcaaaaaattcaatg 336
             ||||||||||||||||||||
Sbjct: 22281 cattttcaaaaaattcaatg 22300



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>emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-307P22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 191464

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    cgccgtcgccgtctgcgagg 159
              ||||||||||||||||||||
Sbjct: 139787 cgccgtcgccgtctgcgagg 139768



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>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence
          Length = 212016

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   gggaagaagccttggctgtg 374
             ||||||||||||||||||||
Sbjct: 76915 gggaagaagccttggctgtg 76896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,295,369
Number of Sequences: 3902068
Number of extensions: 3295369
Number of successful extensions: 77815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77789
Number of HSP's gapped (non-prelim): 25
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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