| Clone Name | bast59c11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 882 bits (445), Expect = 0.0 Identities = 457/460 (99%), Gaps = 1/460 (0%) Strand = Plus / Plus Query: 1 ttagcatggcgcaagcagctgccgcgctctggaacaaggccagtactctctccggtggta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 ttagcatggcgcaagcagctgccgcgctctggaacaaggccagtactctctccggtggta 557 Query: 61 ttggtagcgatgttgtcgacgacgacnacggcgacatgcttcgagccaacgacccggtaa 120 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 558 ttggtagcgatgttgtcgacgacgacgacggcgacatgcttcgagccaacgacccggtaa 617 Query: 121 agcaagcagtggcgaccctcgccgtcgccgtctgcgaggccgcgagattcagccctgtct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 agcaagcagtggcgaccctcgccgtcgccgtctgcgaggccgcgagattcagccctgtct 677 Query: 181 ccaaggtcgtcaatgcaggttggatcaaggacaaggtatccgtcacacccgacgaggtca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 ccaaggtcgtcaatgcaggttggatcaaggacaaggtatccgtcacacccgacgaggtca 737 Query: 241 actacatcaaggagtggggtgacttgtccaccgcgctgctcagctggatggacaagcaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 738 actacatcaaggagtggggtgacttgtccaccgcgctgctcagctggatggacaagcaat 797 Query: 301 acaaggacgatgcaaccattttcaaaaaattcaatggtatcgggataaccaacggggaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 798 acaaggacgatgcaaccattttcaaaaaattcaatggtatcgggataaccaacggggaag 857 Query: 361 aagccttggctgtggtgcggcttatgaagctagtcatccgaagcaacatggcggccgccc 420 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 858 aagccttggctgtggtgcggcttgtgaagctagtcatccgaagcaacatggcggccgccc 917 Query: 421 cgac-accgacgagcagctgctcgcgtacgctcaactacc 459 |||| ||||||||||||||||||||||||||||||||||| Sbjct: 918 cgacaaccgacgagcagctgctcgcgtacgctcaactacc 957
>ref|XM_640149.1| Dictyostelium discoideum hypothetical protein (DDB0203726), partial mRNA Length = 1041 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 accattttcaaaaaattcaat 335 ||||||||||||||||||||| Sbjct: 381 accattttcaaaaaattcaat 401
>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence Length = 268158 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 ccattttcaaaaaattcaatg 336 ||||||||||||||||||||| Sbjct: 239503 ccattttcaaaaaattcaatg 239483
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 accattttcaaaaaattcaat 335 ||||||||||||||||||||| Sbjct: 54408 accattttcaaaaaattcaat 54388
>emb|BX822321.1|CNS0A7SK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 633 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aatacaaggacgatgcaacca 318 ||||||||||||||||||||| Sbjct: 230 aatacaaggacgatgcaacca 250
>gb|AF284037.1| Streptomyces ansochromogenes putative 2-nitropropane dioxygenase (2-npdl) gene, complete cds Length = 1350 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 ctcgccgtcgccgtctgcgaggccg 162 ||||||| ||||||||||||||||| Sbjct: 259 ctcgccgccgccgtctgcgaggccg 283
>gb|AY636066.1| Hypomyces chlorinigenus strain G-10 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 532 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 gcagtggcgaccctcgccgtcgcc 149 |||||||||||||||||| ||||| Sbjct: 449 gcagtggcgaccctcgccatcgcc 472
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cggcgacatgcttcgagcca 108 |||||||||||||||||||| Sbjct: 5627830 cggcgacatgcttcgagcca 5627811
>gb|DQ205099.1| Human poliovirus 2 clone S2R9, complete genome Length = 7439 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ccctgtctccaaggtcgtcaatgcaggt 200 ||||||||||| || ||||||||||||| Sbjct: 2631 ccctgtctccacggccgtcaatgcaggt 2604
>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence Length = 133030 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ccttggctgtggtgcggctt 383 |||||||||||||||||||| Sbjct: 23758 ccttggctgtggtgcggctt 23739
>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163031 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggagtggggtgacttgtcca 270 |||||||||||||||||||| Sbjct: 62510 ggagtggggtgacttgtcca 62529
>emb|BX119965.9| Zebrafish DNA sequence from clone RP71-86I6 in linkage group 14, complete sequence Length = 135252 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cattttcaaaaaattcaatg 336 |||||||||||||||||||| Sbjct: 22281 cattttcaaaaaattcaatg 22300
>emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-307P22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191464 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cgccgtcgccgtctgcgagg 159 |||||||||||||||||||| Sbjct: 139787 cgccgtcgccgtctgcgagg 139768
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence Length = 212016 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gggaagaagccttggctgtg 374 |||||||||||||||||||| Sbjct: 76915 gggaagaagccttggctgtg 76896 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,295,369 Number of Sequences: 3902068 Number of extensions: 3295369 Number of successful extensions: 77815 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77789 Number of HSP's gapped (non-prelim): 25 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)