>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 24/161 (14%)
 Frame = +1

Query: 16   RRFLHRRMPRVAPACSAAVVQRFIVNRCRS-----VPAIAP----------SASRAGGHQ 150
            RR +  R P   P        R+  +  RS      PA AP          S SR+    
Sbjct: 791  RRAVESRSPSPPPRGRGRSYDRYSRSPSRSRSRTRSPAAAPPIRRGRSGTRSRSRSYSRS 850

Query: 151  LLPPRLMAFPSRGRSTASSXXXXXXXXXXXXXXXE-GASRG-------RVGCGPCRRLMT 306
              PP    +P+RGR+  S+                  ASR        R+  G   R  +
Sbjct: 851  PSPPPARGYPTRGRAPVSNNDRAAAASGKRRREGSYSASRSPHPPPQQRLRRGSYSRSRS 910

Query: 307  ASSAPSRTERRAIRVGGRGGLAEARGSWPGMP-SRLRASSP 426
             S  P R    A R  GR G A ARG       SR R  SP
Sbjct: 911  RSPIPIRGNGPAGRDTGRAGPAPARGGRRNRSYSRSRTRSP 951

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
 Frame = -1

Query: 418  TPSGAMASQATTLGPQPVLPGLQRE*RGAPSGSARTRQS*ADDTVHNPRGHARRPQAHG- 242
            T +G+  + ++T G +P+ P L        + S+    S A  T H P         HG 
Sbjct: 2670 TATGSTTNPSSTPGTRPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGR 2729

Query: 241  -------GVVRLAAASLLSMTQWSDHGTETPSGV----VAATGALQHA 131
                     VR A  S  S T  + H TE  +G      A TG  QH+
Sbjct: 2730 SLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHS 2777

>CU056_HUMAN (Q9H0A9) Putative protein C21orf56|
          Length = 340

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 115 IAPSASRAGGHQLLPPRLMAFPSRG 189
           ++ S    GGH LLPPR  A+P  G
Sbjct: 35  LSQSCQEGGGHDLLPPRAHAYPEAG 59

>VE2_HPV25 (P36787) Regulatory protein E2|
          Length = 502

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
 Frame = -2

Query: 318 RGRGSHEPTTRSTTHAATRGALKRMAASYG*PQPHSSR*RSGATT------GRKRHQAWW 157
           RGRG   PTT ++  AA   +    A S    +   SR R+G++       GR+RH+   
Sbjct: 314 RGRGPGSPTTTTSDRAARSPSTTSSATS---QRSQRSRSRAGSSRGGRGRGGRRRHRLSE 370

Query: 156 QQLVPSSTRSAGRDGRHAAAA------IHNESLHNGSRARRC--DARHPPM 28
                 S R +G    H  +A      +H  S  +  R  R   +A  PP+
Sbjct: 371 SPTSKRSRRESGSVRLHGVSADAVGTSVHTVSSRHTGRLGRLLEEALDPPV 421

>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (Box-dependent myc-interacting protein 1)
          Length = 593

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 144 APVAATTPDGVSVPWSLHCVIERSEAAASRTTPPCA*GRLA--WP 272
           +PV A TP G S+PW L    E    +     P  A G  A  WP
Sbjct: 403 SPVKAPTPSGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWP 447

>BIN1_RAT (O08839) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II)
          Length = 588

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 144 APVAATTPDGVSVPWSLHCVIERSEAAASRTTPPCA*G--RLAWP 272
           +PV A TP G S+PW L    E          P  A G   +AWP
Sbjct: 404 SPVKAPTPSGQSIPWDLWEPTESQAGVLPSGEPSSAEGSFAVAWP 448

>BIN1_MOUSE (O08539) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (SH3-domain-containing protein 9)
          Length = 588

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 144 APVAATTPDGVSVPWSLHCVIERSEAAASRTTPPCA*G--RLAWP 272
           +PV A TP G S+PW L    E          P  A G   +AWP
Sbjct: 404 SPVKAPTPSGQSIPWDLWEPTESQAGILPSGEPSSAEGSFAVAWP 448

>CYAA_BORBR (Q57506) Bifunctional hemolysin-adenylate cyclase precursor|
           (Cyclolysin) (ACT) (AC-HLY) [Contains:
           Calmodulin-sensitive adenylate cyclase (EC 4.6.1.1) (ATP
           pyrophosphate-lyase) (Adenylyl cyclase); Hemolysin]
          Length = 1706

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 331 ERRAIRVGGRGGLAEARGSWPGMPSRLRASSPDVVD 438
           E RA  V G+    +  G+ PG+P     SSPDV++
Sbjct: 346 ENRAYGVAGKSLFDDGLGAAPGVPGGRSKSSPDVLE 381

>ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finger protein NK10)|
          Length = 636

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
 Frame = -2

Query: 219 PHSSR*RSGATTGRKRHQA--------WWQQLV----------PSSTRSAGRDGRHAAAA 94
           P+S+    GA +GRK H+         W  QL           P      G+  RH+++ 
Sbjct: 234 PYSNGTDQGAQSGRKHHECADCGKTFLWRTQLTEHQRIHTGEKPFECNVCGKAFRHSSSL 293

Query: 93  IHNESLHNGSRARRC 49
             +E+ H G +  +C
Sbjct: 294 GQHENAHTGEKPYQC 308

>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1233

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 175  TPSGVVAATGALQHAKRW-ARWPARCGSDSQ*ISAQRQQSTQVRREASSYVRTCGAGLP 2
            TP   ++    +     W ARWP R G   + +SA  +  +  R   SS+ R   +G P
Sbjct: 983  TPGPPLSDVSRVSRRPAWEARWPVRTGHCGRHLSASERPLSPARCHYSSFPRADRSGRP 1041

>TLL_DROME (P18102) Protein tailless|
          Length = 452

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
 Frame = +3

Query: 96  LPQRAGHRAQRFACWRAPVAATTPDGVSVPWSLHCVIERS------------EAAASRTT 239
           LPQRAGH     A ++ P +A     +SVP   H  + +              A A+R  
Sbjct: 161 LPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRAL 220

Query: 240 PP 245
           PP
Sbjct: 221 PP 222

>CYSD_EMENI (P50125) O-acetylhomoserine (thiol)-lyase (EC 2.5.1.49)|
           (O-acetylhomoserine sulfhydrylase) (OAH sulfhydrylase)
           (Homocysteine synthase)
          Length = 437

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 292 DTVHNPRGHARRPQAHGGVVRLAAASLLSMTQW-SDHGTETPSGVVAATGALQHAKRWAR 116
           D      G+  RP  HG  + + +A     T+W   HGT T  GVV  +G  +  K  AR
Sbjct: 185 DNTFGAGGYFVRPIEHGADIVVHSA-----TKWIGGHGT-TIGGVVVDSGKFEWGKNAAR 238

Query: 115 WP 110
           +P
Sbjct: 239 FP 240

>ZN132_HUMAN (P52740) Zinc finger protein 132|
          Length = 589

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -2

Query: 177 KRHQAWWQQLVPSSTRSAGRDGRHAAAAIHNESLHNGSRARRCD 46
           ++HQ +  ++      + G+   H    +H++ +H+G R   CD
Sbjct: 190 RKHQKFHTEVKYYECIACGKTFNHKLTFVHHQRIHSGERPYECD 233

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 210  RSEAAASRTTPPCA*GRLAWPRGLWTVSSAHDCLVRAEPDGAPRYS 347
            + +A AS +T   A  R     G+ T+S   DC V+ EP+  PR S
Sbjct: 2651 KHDATASSSTTAAATARAMSSVGIQTIS---DCSVQTEPEQLPRVS 2693

>CYAA_BORPE (P15318) Bifunctional hemolysin-adenylate cyclase precursor|
           (Cyclolysin) (ACT) (AC-HLY) [Contains:
           Calmodulin-sensitive adenylate cyclase (EC 4.6.1.1) (ATP
           pyrophosphate-lyase) (Adenylyl cyclase); Hemolysin]
          Length = 1706

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 331 ERRAIRVGGRGGLAEARGSWPGMPSRLRASSPDVVD 438
           E RA  V G+    +  G+ PG+PS     SPDV++
Sbjct: 346 ENRAYGVAGKSLFDDGLGAAPGVPSGRSKFSPDVLE 381

>SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3.6.1.-)|
            (ATP-dependent helicase SNF2) (SWI/SNF complex component
            SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1)
            (Transcription factor TYE3)
          Length = 1703

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 305  LPRPRRAGRSAALFALEAGEDWLRPEGRGLGCHRA*GRP 421
            +P+PR AG+++   A  +     R  GRG G  R  GRP
Sbjct: 1486 IPKPRTAGKTSVKSARTSTRGRGRGRGRGRGRGRGRGRP 1524


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,871,895
Number of Sequences: 219361
Number of extensions: 1543242
Number of successful extensions: 4981
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4978
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)