>MENA_SYNY3 (P73962) Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase|
           (EC 2.5.1.-) (DHNA-octaprenyltransferase)
          Length = 307

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +2

Query: 308 LWRAA-KLPIYSVALVPLTVGAAAAYNHAXLFFAGRYFGLLAAAVLVITWL 457
           LW AA K P+Y+VA+VP+TVG+A AY     +    +   L +A+ +I W+
Sbjct: 18  LWLAAIKPPMYTVAVVPITVGSAVAYGLTGQWHGDVFTIFLLSAIAIIAWI 68

>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2|
          Length = 953

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +1

Query: 7   RTAAPSCPWPAAVPRSMLRHS*SNPSSLPQPAFGADAARRHCPRASPRIPSRASLSLCPW 186
           + A P+ P PAA   +  +     P++ P P  G  AA+       P  P  A+    P 
Sbjct: 88  QAAKPAAPKPAAPKPAAEKKPAPKPAAKPVPKPGFSAAKAESSAPKPAAPKPAAPK--PA 145

Query: 187 RRCSLRRAPGKAPR 228
            + S    PG  PR
Sbjct: 146 AQSSTTATPGSMPR 159

>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA|
           exonuclease 1 homolog-like)
          Length = 427

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
 Frame = +1

Query: 1   KHRTAAPS---CPWPAAVPRSMLRHS*SNPSSLPQP------AFGADAARR--------- 126
           +HR+A+P+   CPWP A   + +     +P S P P        GA   RR         
Sbjct: 306 RHRSASPAALACPWPQAPSTTAI-----SPESSPCPPRRKAKETGAVDGRRGQKAKSNPN 360

Query: 127 ---HCPRASPRIPSRASLSLCP 183
                PR   R PS  S SLCP
Sbjct: 361 RPLPVPRNPCRGPSGLSPSLCP 382

>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
          Length = 1162

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 13  AAPSCPWPAAVPRSMLRHS*SNPSSLPQPAFGADAARRHCPRASPRIPSR 162
           +APS P  AAV  S L      P+  P PA  +  A    P ++P  P R
Sbjct: 113 SAPSLPPAAAVLPSKLPEDDEPPARPPAPAGASPLAEPAAPPSTPAAPKR 162

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
 Frame = +1

Query: 7   RTAAPSC-----PWPAAVPRSMLRHS*SNPS------SLPQPAFGADAARRHCPRASPRI 153
           RT +  C     P P +  R+    +  NPS       +P  +F     +   PR S   
Sbjct: 539 RTFSQGCTQKDNPGPPSPRRATQGSNSRNPSPHRTNKDIPWASFPLRPTQSDSPRTSS-- 596

Query: 154 PSRASLSLCPWRRCSLRRAPGKAPRAT 234
           PSR   +  PW   SLR   G  P+ +
Sbjct: 597 PSRTKQNQVPWASISLRPTQGDKPQTS 623

>CDT1_MOUSE (Q8R4E9) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
           (Retroviral insertion site 2 protein)
          Length = 557

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 13  AAPSCPWPAAVPRSMLRHS*--SNPSSLPQPAFGADAARRHCPRASPRIPSRASLSLCP 183
           A P    PA + R  LR     S PSSLP+P+  A+ +    P A P  P+     +CP
Sbjct: 52  AEPGSDQPAPLARRRLRLPGLDSCPSSLPEPSSPAEPS----PPADPSPPADPGSPVCP 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,538,354
Number of Sequences: 219361
Number of extensions: 631083
Number of successful extensions: 2474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2472
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)