Clone Information

BLAST Search Result

Clone Name	bast59c09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF474982.1\| Hordeum vulgare clone BAC 011009, complete sequence	601	e-169
2	gb\|BT009062.1\| Triticum aestivum clone wds1f.pk002.a12:fis, full...	206	5e-50
3	ref\|NM_187680.1\| Oryza sativa (japonica cultivar-group), predic...	78	3e-11
4	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	78	3e-11
5	dbj\|AK061907.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	3e-11
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
7	dbj\|AK066332.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	3e-11
8	gb\|AC121489.2\| Oryza sativa (japonica cultivar-group) chromosome...	78	3e-11
9	gb\|AY112630.1\| Zea mays CL552_1 mRNA sequence	62	2e-06
10	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	46	0.10
11	ref\|NM_153756.1\| Homo sapiens fibronectin type III domain contai...	42	1.6
12	gb\|BC007548.1\| Homo sapiens fibronectin type III domain containi...	42	1.6
13	gb\|BC033123.1\| Homo sapiens fibronectin type III domain containi...	42	1.6
14	gb\|AC158934.4\| Mus musculus chromosome 3, clone RP23-218L17, com...	42	1.6
15	dbj\|AK092102.1\| Homo sapiens cDNA FLJ34783 fis, clone NT2NE2003921	42	1.6
16	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	1.6
17	gb\|AC114493.3\| Homo sapiens chromosome 1 clone RP11-336O20, comp...	42	1.6
18	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	42	1.6
19	gb\|AC102844.11\| Mus musculus chromosome 3, clone RP24-389H4, com...	42	1.6
20	emb\|BX537781.1\|HSM805868 Homo sapiens mRNA; cDNA DKFZp779L0160 (...	42	1.6
21	gb\|U41627.1\|SHU41627 Streptomyces halstedii beta-1,4-endoxylanas...	42	1.6
22	emb\|AL137791.19\| Human DNA sequence from clone RP5-1079D1 on chr...	42	1.6
23	dbj\|AB040071.1\| Streptomyces griseus genes for ABC transport sys...	42	1.6
24	ref\|NM_194828.1\| Oryza sativa (japonica cultivar-group) putative...	40	6.2
25	gb\|AC164075.4\| Mus musculus chromosome 7, clone RP24-259P13, com...	40	6.2
26	gb\|AC145839.3\| Microcebus murinus clone CH257-408H17, complete s...	40	6.2
27	gb\|AY652588.1\| Homo sapiens origin recognition complex, subunit ...	40	6.2
28	ref\|NM_001006486.1\| Gallus gallus SET domain containing 3 (SETD3...	40	6.2
29	gb\|AC145838.3\| Microcebus murinus clone CH257-311F17, complete s...	40	6.2
30	gb\|AC110903.25\| Mus musculus chromosome 7, clone RP24-174G2, com...	40	6.2
31	gb\|CP000115.1\| Nitrobacter winogradskyi Nb-255, complete genome	40	6.2
32	ref\|XM_848658.1\| PREDICTED: Canis familiaris similar to pellino ...	40	6.2
33	gb\|AY330485.1\| Saccharopolyspora erythraea amino acid permease g...	40	6.2
34	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	40	6.2
35	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	6.2
36	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	40	6.2
37	gb\|CP000088.1\| Thermobifida fusca YX, complete genome	40	6.2
38	emb\|AJ719365.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	6.2
39	gb\|AC074105.3\| Oryza sativa chromosome 10 clone OSJNBa0030B02, c...	40	6.2
40	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
41	gb\|AC005037.2\| Homo sapiens BAC clone RP11-469M7 from 2, complet...	40	6.2
42	gb\|AC007565.1\|AC007565 Homo sapiens chromosome 19, cosmid R27656...	40	6.2
43	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
44	gb\|AC122425.5\| Mus musculus BAC clone RP24-174D10 from 3, comple...	40	6.2
45	gb\|DP000022.1\| Microcebus murinus target 1 genomic scaffold	40	6.2

>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score =  601 bits (303), Expect = e-169
 Identities = 348/363 (95%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagcaccgcaccgccgctcccagctgcccctggccggcggccgtgccccgctcgatgtta 60
            ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 2451 aagcaccacacccccgctcccagctgcccctggccggcggccgtgccccgctcgatggaa 2510

                                                                        
Query: 61   cgccactcctagtctaacccgagctccctcccccagccagcgttcggagccgatgccgct 120
            ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2511 cgccactcctaatctaactcgagctccctcccccagccagcgttcgaagccgatgccgct 2570

                                                                        
Query: 121  cgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctccctctccctgtgc 180
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 2571 cgccggcattgccctcgcgcctctcctcgtatcccctctctcgcctccctctccctatgc 2630

                                                                        
Query: 181  ccgtggcggcgttgcagtctccgcagagccccggggaaggcgccgcgcgctacggcgggt 240
            ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2631 ccgtggcagcgttgcagtctccgcagagccccggggaaggcgtcgcgcgctacggcgggt 2690

                                                                        
Query: 241  gcggtgctcggccgcagcggcgtccggcggaggcggtgacgccggcgagctgtcacgcgc 300
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 2691 gcggtgctcggccgcagcggcgtccggcggaggcagtgacgccggcgagctgtcacacgc 2750

                                                                        
Query: 301  cacgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
            |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 2751 cacgctgctctggagggccgccaagctgtccatctactccgtggcactcgtgccgctcac 2810

               
Query: 361  cgt 363
            |||
Sbjct: 2811 cgt 2813



 Score =  155 bits (78), Expect = 2e-34
 Identities = 92/97 (94%)
 Strand = Plus / Plus

                                                                        
Query: 362  gtaggggctgctgctgcttacaaccacgcggngctgttcttcgccgggcgctacttcggc 421
            |||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 3058 gtaggggccgctgctgcttacaaccacgcggggctgttcttcgccaggcgctacttcggc 3117

                                                 
Query: 422  ctcttggcagctgctgtcctcgtgatcacctggctca 458
            |||||||||||||||  ||||||||||||||||||||
Sbjct: 3118 ctcttggcagctgcttccctcgtgatcacctggctca 3154

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>gb|BT009062.1| Triticum aestivum clone wds1f.pk002.a12:fis, full insert mRNA
           sequence
          Length = 1970

 Score =  206 bits (104), Expect = 5e-50
 Identities = 157/175 (89%)
 Strand = Plus / Plus

                                                                       
Query: 284 ggcgagctgtcacgcgccacgctgctctggagggccgccaagctgcccatctactccgtg 343
           |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 ggcgagctttcccgcgcgacgctgctctggagggcggccaagctgcccatctactccgtg 368

                                                                       
Query: 344 gcgctcgtgccgctcaccgtaggggctgctgctgcttacaaccacgcggngctgttcttc 403
           |||||||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| 
Sbjct: 369 gcgctcgtgccgctcaccgtagggactgctgctgcttataaccatgccgggttgttcttt 428

                                                                  
Query: 404 gccgggcgctacttcggcctcttggcagctgctgtcctcgtgatcacctggctca 458
           ||| |||||||||  |||||| |||| ||||||||||| |||||||| |||||||
Sbjct: 429 gccaggcgctactctggcctcctggctgctgctgtccttgtgatcacatggctca 483



 Score =  155 bits (78), Expect = 2e-34
 Identities = 160/187 (85%), Gaps = 9/187 (4%)
 Strand = Plus / Plus

                                                                       
Query: 92  cccagccagcgttcggagccgatgccgctcgccggcattgccctcgcgcctctcctcgta 151
           ||||||||||| |||  |||||||||| ||||||| ||||||||||||||||||||||| 
Sbjct: 132 cccagccagcgctcgaggccgatgccgttcgccgggattgccctcgcgcctctcctcgtc 191

                                                                       
Query: 152 tcccctctcgcgcctccctctccctgtgcccgtggcggcgtt---gcagtctccgcagag 208
           ||||||||||||||||||||||      |||||||| |||||   || || || ||||||
Sbjct: 192 tcccctctcgcgcctccctctc------cccgtggcagcgttgccgccgtttctgcagag 245

                                                                       
Query: 209 ccccggggaaggcgccgcgcgctacggcgggtgcggtgctcggccgcagcggcgtccggc 268
           |||  | ||||||||||| | |||||||| ||||||||| | ||||||||||||||||||
Sbjct: 246 cccgcgagaaggcgccgcactctacggcgagtgcggtgccccgccgcagcggcgtccggc 305

                  
Query: 269 ggaggcg 275
           |||||||
Sbjct: 306 ggaggcg 312

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>ref|NM_187680.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 302 acgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
           ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 193 acgctgctctggagggcggcaaagctgccaatctactccgtggcgcttgtgccactcac 251



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 113 atgccgctcgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctcc 168
           ||||||||||||||||| ||||||||||||||| |||| ||||  |||||||||||
Sbjct: 1   atgccgctcgccggcatcgccctcgcgcctctcttcgtctcccacctcgcgcctcc 56

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 110     ccgatgccgctcgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctcc 168
               |||||||||||||||||||| ||||||||||||||| |||| ||||  |||||||||||
Sbjct: 4681755 ccgatgccgctcgccggcatcgccctcgcgcctctcttcgtctcccacctcgcgcctcc 4681697



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 302     acgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
               ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 4681560 acgctgctctggagggcggcaaagctgccaatctactccgtggcgcttgtgccactcac 4681502

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>dbj|AK061907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H11, full
           insert sequence
          Length = 1704

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 302 acgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
           ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 246 acgctgctctggagggcggcaaagctgccaatctactccgtggcgcttgtgccactcac 304



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 110 ccgatgccgctcgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctcc 168
           |||||||||||||||||||| ||||||||||||||| |||| ||||  |||||||||||
Sbjct: 51  ccgatgccgctcgccggcatcgccctcgcgcctctcttcgtctcccacctcgcgcctcc 109

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 110     ccgatgccgctcgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctcc 168
               |||||||||||||||||||| ||||||||||||||| |||| ||||  |||||||||||
Sbjct: 4681870 ccgatgccgctcgccggcatcgccctcgcgcctctcttcgtctcccacctcgcgcctcc 4681812



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 302     acgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
               ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 4681675 acgctgctctggagggcggcaaagctgccaatctactccgtggcgcttgtgccactcac 4681617

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>dbj|AK066332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060C07, full
           insert sequence
          Length = 1800

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 302 acgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
           ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 235 acgctgctctggagggcggcaaagctgccaatctactccgtggcgcttgtgccactcac 293



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 110 ccgatgccgctcgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctcc 168
           |||||||||||||||||||| ||||||||||||||| |||| ||||  |||||||||||
Sbjct: 40  ccgatgccgctcgccggcatcgccctcgcgcctctcttcgtctcccacctcgcgcctcc 98

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>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09,
              complete sequence
          Length = 148894

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                         
Query: 110    ccgatgccgctcgccggcattgccctcgcgcctctcctcgtatcccctctcgcgcctcc 168
              |||||||||||||||||||| ||||||||||||||| |||| ||||  |||||||||||
Sbjct: 122710 ccgatgccgctcgccggcatcgccctcgcgcctctcttcgtctcccacctcgcgcctcc 122652



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                         
Query: 302    acgctgctctggagggccgccaagctgcccatctactccgtggcgctcgtgccgctcac 360
              ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 122515 acgctgctctggagggcggcaaagctgccaatctactccgtggcgcttgtgccactcac 122457

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>gb|AY112630.1| Zea mays CL552_1 mRNA sequence
          Length = 1615

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 274 cggtgacgccggcgagctgtcacgcgccacgctgctctggagggccgccaagctgcccat 333
           |||||| ||||| |||||||| | ||| || ||||| |||||||| || ||||| |||||
Sbjct: 179 cggtgaagccggtgagctgtcgcacgcgacactgctatggagggcggcgaagctacccat 238

                          
Query: 334 ctactccgtggcgct 348
           ||||||||| |||||
Sbjct: 239 ctactccgtagcgct 253



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 112 gatgccgctcgccggcattgccctc 136
           |||||||||||||||||||||||||
Sbjct: 38  gatgccgctcgccggcattgccctc 62

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 234     ggcgggtgcggtgctcggccgca 256
               |||||||||||||||||||||||
Sbjct: 2449285 ggcgggtgcggtgctcggccgca 2449263

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>ref|NM_153756.1| Homo sapiens fibronectin type III domain containing 5 (FNDC5), mRNA
          Length = 2657

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 166  tccctctccctgtgcccgtgg 186
            |||||||||||||||||||||
Sbjct: 1270 tccctctccctgtgcccgtgg 1250

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>gb|BC007548.1| Homo sapiens fibronectin type III domain containing 5, mRNA (cDNA
           clone IMAGE:2959994), partial cds
          Length = 1610

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 166 tccctctccctgtgcccgtgg 186
           |||||||||||||||||||||
Sbjct: 168 tccctctccctgtgcccgtgg 148

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>gb|BC033123.1| Homo sapiens fibronectin type III domain containing 5, mRNA (cDNA
           clone IMAGE:2959995), partial cds
          Length = 1610

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 166 tccctctccctgtgcccgtgg 186
           |||||||||||||||||||||
Sbjct: 168 tccctctccctgtgcccgtgg 148

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>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence
          Length = 194631

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 362   gtaggggctgctgctgcttac 382
             |||||||||||||||||||||
Sbjct: 18867 gtaggggctgctgctgcttac 18887

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>dbj|AK092102.1| Homo sapiens cDNA FLJ34783 fis, clone NT2NE2003921
          Length = 2657

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 166  tccctctccctgtgcccgtgg 186
            |||||||||||||||||||||
Sbjct: 1270 tccctctccctgtgcccgtgg 1250

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 258     cggcgtccggcggaggcggtgacgc 282
               ||||||||||||||| |||||||||
Sbjct: 5657383 cggcgtccggcggagccggtgacgc 5657359



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 17      ctcccagctgcccctggccggcggccgt 44
               |||||||||||  |||||||||||||||
Sbjct: 5566143 ctcccagctgctgctggccggcggccgt 5566170

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>gb|AC114493.3| Homo sapiens chromosome 1 clone RP11-336O20, complete sequence
          Length = 179221

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   tccctctccctgtgcccgtgg 186
             |||||||||||||||||||||
Sbjct: 98683 tccctctccctgtgcccgtgg 98703

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 244     gtgctcggccgcagcggcgtc 264
               |||||||||||||||||||||
Sbjct: 4946936 gtgctcggccgcagcggcgtc 4946916

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>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence
          Length = 199088

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 362    gtaggggctgctgctgcttac 382
              |||||||||||||||||||||
Sbjct: 116218 gtaggggctgctgctgcttac 116198

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>emb|BX537781.1|HSM805868 Homo sapiens mRNA; cDNA DKFZp779L0160 (from clone DKFZp779L0160)
          Length = 1977

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 166 tccctctccctgtgcccgtgg 186
           |||||||||||||||||||||
Sbjct: 564 tccctctccctgtgcccgtgg 544

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>gb|U41627.1|SHU41627 Streptomyces halstedii beta-1,4-endoxylanase (xysA) gene, complete
            cds
          Length = 2873

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 263  tccggcggaggcggtgacgccggcg 287
            ||||||||||||||||||| |||||
Sbjct: 1985 tccggcggaggcggtgacgacggcg 2009

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>emb|AL137791.19| Human DNA sequence from clone RP5-1079D1 on chromosome 1p32.2-33,
             complete sequence
          Length = 66254

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   tccctctccctgtgcccgtgg 186
             |||||||||||||||||||||
Sbjct: 23788 tccctctccctgtgcccgtgg 23808

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>dbj|AB040071.1| Streptomyces griseus genes for ABC transport system sugar permease,
            ABC sugar transport ATP binding, sugar kinase, secreted
            protein, P52/p3, cyclase, methyltransferase, partial and
            complete cds
          Length = 7944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   cggcggccgtgccccgctcga 55
            |||||||||||||||||||||
Sbjct: 4143 cggcggccgtgccccgctcga 4123

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>ref|NM_194828.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450
           (OSJNBa0030B02.2), mRNA
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gcggcgtccggcggaggcgg 276
           ||||||||||||||||||||
Sbjct: 493 gcggcgtccggcggaggcgg 512

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>gb|AC164075.4| Mus musculus chromosome 7, clone RP24-259P13, complete sequence
          Length = 159578

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   cacgctgctctggagggccg 320
             ||||||||||||||||||||
Sbjct: 24514 cacgctgctctggagggccg 24533

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>gb|AC145839.3| Microcebus murinus clone CH257-408H17, complete sequence
          Length = 172417

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    aggggctgctgctgcttaca 383
              ||||||||||||||||||||
Sbjct: 161750 aggggctgctgctgcttaca 161769

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>gb|AY652588.1| Homo sapiens origin recognition complex, subunit 2-like (yeast) (ORC2L)
             gene, complete cds
          Length = 56811

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   cctcgtgatcacctggctca 458
             ||||||||||||||||||||
Sbjct: 15211 cctcgtgatcacctggctca 15230

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>ref|NM_001006486.1| Gallus gallus SET domain containing 3 (SETD3), mRNA
          Length = 1936

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 gcagcggcgtccggcggagg 273
           ||||||||||||||||||||
Sbjct: 9   gcagcggcgtccggcggagg 28

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>gb|AC145838.3| Microcebus murinus clone CH257-311F17, complete sequence
          Length = 204661

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  aggggctgctgctgcttaca 383
            ||||||||||||||||||||
Sbjct: 2623 aggggctgctgctgcttaca 2642

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>gb|AC110903.25| Mus musculus chromosome 7, clone RP24-174G2, complete sequence
          Length = 181076

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    cacgctgctctggagggccg 320
              ||||||||||||||||||||
Sbjct: 126438 cacgctgctctggagggccg 126457

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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     ggcgccgcgcgctacggcgg 238
               ||||||||||||||||||||
Sbjct: 2844173 ggcgccgcgcgctacggcgg 2844192

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>ref|XM_848658.1| PREDICTED: Canis familiaris similar to pellino 2 (LOC611036), mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 299 gccacgctgctctggagggccgcc 322
           |||||||||||||||||| |||||
Sbjct: 751 gccacgctgctctggaggaccgcc 774

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>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds;
             transport protein, helix-turn-helix regulator (pkeRI),
             P450 monooxygenase (pkePI), P450 monooxygenase (pkePII),
             P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I
             PKS (pkeAII), and type I PKS (pkeAIII) genes, complete
             cds; pkeAIV gene, complete sequence; type I PKS,
             monooxygenases, transporter, ketoacyl-ACP synthase
             (typeII), acyl carrier protien, amino transferase, and
             DNA-binding protein genes, complete cds; and unknown genes
          Length = 68451

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   gctcggccgcagcggcgtccggcg 269
             |||||||||||||| |||||||||
Sbjct: 60815 gctcggccgcagcgccgtccggcg 60792

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 242     cggtgctcggccgcagcggcgtcc 265
               ||||||||||||||| ||||||||
Sbjct: 2710632 cggtgctcggccgcatcggcgtcc 2710655

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 117     cgctcgccggcattgccctcgcgc 140
               ||||||||||||||||| ||||||
Sbjct: 4714645 cgctcgccggcattgccgtcgcgc 4714668

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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 145     cctcgtatcccctctcgcgc 164
               ||||||||||||||||||||
Sbjct: 1982119 cctcgtatcccctctcgcgc 1982138

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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 241     gcggtgctcggccgcagcgg 260
               ||||||||||||||||||||
Sbjct: 2596146 gcggtgctcggccgcagcgg 2596165

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>emb|AJ719365.1| Gallus gallus mRNA for hypothetical protein, clone 1k10
          Length = 1936

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 gcagcggcgtccggcggagg 273
           ||||||||||||||||||||
Sbjct: 9   gcagcggcgtccggcggagg 28

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>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence
          Length = 146836

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   gcggcgtccggcggaggcgg 276
             ||||||||||||||||||||
Sbjct: 17207 gcggcgtccggcggaggcgg 17188

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     gcggcgtccggcggaggcgg 276
               ||||||||||||||||||||
Sbjct: 2690431 gcggcgtccggcggaggcgg 2690412

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>gb|AC005037.2| Homo sapiens BAC clone RP11-469M7 from 2, complete sequence
          Length = 190508

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   cctcgtgatcacctggctca 458
             ||||||||||||||||||||
Sbjct: 64369 cctcgtgatcacctggctca 64388

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>gb|AC007565.1|AC007565 Homo sapiens chromosome 19, cosmid R27656, complete sequence
          Length = 42030

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   acggcgggtgcggtgctcggccgc 255
             |||||||| |||||||||||||||
Sbjct: 30455 acggcgggggcggtgctcggccgc 30432

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     gcggcgtccggcggaggcgg 276
               ||||||||||||||||||||
Sbjct: 2690382 gcggcgtccggcggaggcgg 2690363

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>gb|AC122425.5| Mus musculus BAC clone RP24-174D10 from 3, complete sequence
          Length = 163172

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   ccaagctgcccatctactcc 340
             ||||||||||||||||||||
Sbjct: 39190 ccaagctgcccatctactcc 39209

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>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    aggggctgctgctgcttaca 383
              ||||||||||||||||||||
Sbjct: 161750 aggggctgctgctgcttaca 161769


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,507,122
Number of Sequences: 3902068
Number of extensions: 3507122
Number of successful extensions: 74917
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73841
Number of HSP's gapped (non-prelim): 1076
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result