| Clone Name | bast59c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full insert sequence Length = 1826 Score = 268 bits (135), Expect = 1e-68 Identities = 303/359 (84%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 224 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 283 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 284 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 343 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 344 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 403 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct: 404 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 463 Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 464 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 523 Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 524 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 582
>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full insert sequence Length = 2721 Score = 268 bits (135), Expect = 1e-68 Identities = 303/359 (84%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 1119 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 1178 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 1179 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 1238 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 1239 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 1298 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct: 1299 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 1358 Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 1359 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 1418 Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 1419 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 1477
>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full insert sequence Length = 2118 Score = 268 bits (135), Expect = 1e-68 Identities = 303/359 (84%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 236 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 295 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 296 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 355 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 356 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 415 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct: 416 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 475 Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 476 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 535 Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 536 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 594
>dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A09, full insert sequence Length = 1443 Score = 268 bits (135), Expect = 1e-68 Identities = 303/359 (84%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 128 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 187 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 188 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 247 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 248 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 307 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct: 308 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 367 Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 368 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 427 Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 428 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 486
>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full insert sequence Length = 1828 Score = 268 bits (135), Expect = 1e-68 Identities = 303/359 (84%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 224 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 283 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 284 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 343 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 344 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 403 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct: 404 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 463 Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 464 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 523 Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 524 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 582
>dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B06, full insert sequence Length = 1551 Score = 268 bits (135), Expect = 1e-68 Identities = 303/359 (84%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 205 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 264 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 265 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 324 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 325 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 384 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct: 385 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 444 Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 445 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 504 Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 505 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 563
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 216 bits (109), Expect = 4e-53 Identities = 205/237 (86%) Strand = Plus / Minus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 19225479 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 19225420 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 19225419 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 19225360 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 19225359 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 19225300 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 19225299 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 19225243 Score = 85.7 bits (43), Expect = 1e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 366 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 19224784 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 19224730 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 19205337 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 19205278 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 19205277 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 19205238 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Minus Query: 164 ggacggctgccgcagcacacgtacctcgactactc 198 ||||||||||| |||||||| ||||| |||||||| Sbjct: 19246989 ggacggctgcctcagcacacatacctggactactc 19246955
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 216 bits (109), Expect = 4e-53 Identities = 205/237 (86%) Strand = Plus / Minus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 19151706 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 19151647 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 19151646 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 19151587 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 19151586 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 19151527 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 19151526 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 19151470 Score = 85.7 bits (43), Expect = 1e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 366 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 19151011 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 19150957 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 19131564 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 19131505 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 19131504 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 19131465 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Minus Query: 164 ggacggctgccgcagcacacgtacctcgactactc 198 ||||||||||| |||||||| ||||| |||||||| Sbjct: 19173216 ggacggctgcctcagcacacatacctggactactc 19173182
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 216 bits (109), Expect = 4e-53 Identities = 205/237 (86%) Strand = Plus / Plus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 466 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 525 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 526 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 585 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 586 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 645 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 646 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 702 Score = 85.7 bits (43), Expect = 1e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 366 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 1161 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 1215 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 20644 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 20703 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 20704 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 20743
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 216 bits (109), Expect = 4e-53 Identities = 205/237 (86%) Strand = Plus / Minus Query: 62 atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121 |||||||| |||||||| |||||||| ||||| | |||||||| | | | |||||||| Sbjct: 58809 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 58750 Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181 || ||||| |||||||| |||| |||||||||||||||||| || || || ||||||||| Sbjct: 58749 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 58690 Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241 || ||||| ||||||||||||||||||||||| |||||| | || ||||| |||| ||| Sbjct: 58689 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 58630 Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298 ||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 58629 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 58573 Score = 85.7 bits (43), Expect = 1e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 366 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 58114 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 58060 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 38667 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 38608 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 38607 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 38568 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Minus Query: 164 ggacggctgccgcagcacacgtacctcgactactc 198 ||||||||||| |||||||| ||||| |||||||| Sbjct: 80319 ggacggctgcctcagcacacatacctggactactc 80285
>dbj|AK106219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H06, full insert sequence Length = 1626 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 180 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 239 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 240 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 279
>dbj|AK073792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068M22, full insert sequence Length = 1745 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 181 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 240 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 241 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 280
>dbj|AK072750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134K21, full insert sequence Length = 2066 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 557 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 616 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 617 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 656
>dbj|AK058620.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B07, full insert sequence Length = 1587 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214 |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| Sbjct: 139 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 198 Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 199 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 238
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 330 cgctggcgggcggcgtggtgatc 352 ||||||||||||||||||||||| Sbjct: 1695353 cgctggcgggcggcgtggtgatc 1695375
>gb|BT018631.1| Zea mays clone EL01N0503E08.d mRNA sequence Length = 2126 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cgccgtgctggagcgccgggg 165 ||||||||||||||||||||| Sbjct: 277 cgccgtgctggagcgccgggg 297
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 tcgtccacgccgtgctggagc 158 ||||||||||||||||||||| Sbjct: 1344425 tcgtccacgccgtgctggagc 1344445
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 atcaccctcggcaccgtggcc 370 ||||||||||||||||||||| Sbjct: 1788735 atcaccctcggcaccgtggcc 1788755 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ggagccatcgggctgatggcggcg 109 ||||||||||| |||||||||||| Sbjct: 745995 ggagccatcggcctgatggcggcg 746018
>ref|XM_571428.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNF04630) partial mRNA Length = 1816 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 tcgtccacgccgtgctggagc 158 ||||||||||||||||||||| Sbjct: 775 tcgtccacgccgtgctggagc 795
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 cgccgtgctgatcgccctcac 237 ||||||||||||||||||||| Sbjct: 294480 cgccgtgctgatcgccctcac 294500
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgctggcgggcggcgtggt 348 |||||||||||||||||||| Sbjct: 609345 gcgctggcgggcggcgtggt 609326 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgctggcgggcggcgtggt 348 |||||||||||||||||||| Sbjct: 401679 gcgctggcgggcggcgtggt 401660
>ref|XM_601967.2| PREDICTED: Bos taurus similar to neural stem cell-derived dendrite regulator, transcript variant 3 (LOC523665), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tccacgccgtgctggagcgc 160 |||||||||||||||||||| Sbjct: 2426 tccacgccgtgctggagcgc 2445
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgctggcgggcggcgtggt 348 |||||||||||||||||||| Sbjct: 266071 gcgctggcgggcggcgtggt 266052 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgctggcgggcggcgtggt 348 |||||||||||||||||||| Sbjct: 59712 gcgctggcgggcggcgtggt 59693
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgctggcgggcggcgtggt 348 |||||||||||||||||||| Sbjct: 266129 gcgctggcgggcggcgtggt 266110 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgctggcgggcggcgtggt 348 |||||||||||||||||||| Sbjct: 59649 gcgctggcgggcggcgtggt 59630
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 gcgccggggacggctgccgcagca 180 |||||||||||||| ||||||||| Sbjct: 112803 gcgccggggacggcggccgcagca 112780
>emb|AL663039.18| Mouse DNA sequence from clone RP23-50H23 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 219899 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aagagcagcctcatctttgg 29 |||||||||||||||||||| Sbjct: 173800 aagagcagcctcatctttgg 173819
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cattcggccagatcggcggc 256 |||||||||||||||||||| Sbjct: 1871714 cattcggccagatcggcggc 1871733
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ccgccgtgctgatcgccctc 235 |||||||||||||||||||| Sbjct: 393311 ccgccgtgctgatcgccctc 393292 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,695,776 Number of Sequences: 3902068 Number of extensions: 2695776 Number of successful extensions: 54733 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53983 Number of HSP's gapped (non-prelim): 750 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)