ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
2dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
3dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
4dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
5dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
6dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 216 4e-53
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 216 4e-53
9emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 216 4e-53
10emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 216 4e-53
11dbj|AK106219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
12dbj|AK073792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
13dbj|AK072750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
14dbj|AK058620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
15gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 46 0.093
16gb|BT018631.1| Zea mays clone EL01N0503E08.d mRNA sequence 42 1.4
17gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.4
18gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.4
19ref|XM_571428.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 1.4
20emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 42 1.4
21gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.7
22ref|XM_601967.2| PREDICTED: Bos taurus similar to neural stem ce... 40 5.7
23emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.7
24emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.7
25emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 40 5.7
26emb|AL663039.18| Mouse DNA sequence from clone RP23-50H23 on chr... 40 5.7
27dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.7
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.7

>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full
           insert sequence
          Length = 1826

 Score =  268 bits (135), Expect = 1e-68
 Identities = 303/359 (84%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
           |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 224 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 283

                                                                       
Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
           || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 284 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 343

                                                                       
Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
           || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 344 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 403

                                                                       
Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301
           ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |
Sbjct: 404 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 463

                                                                       
Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361
           |||||| ||||||| || ||| |||| ||| || |||| ||| |  | | |  ||| || 
Sbjct: 464 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 523

                                                                      
Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
           ||  |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 524 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 582



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>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full
            insert sequence
          Length = 2721

 Score =  268 bits (135), Expect = 1e-68
 Identities = 303/359 (84%)
 Strand = Plus / Plus

                                                                        
Query: 62   atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
            |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 1119 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 1178

                                                                        
Query: 122  ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
            || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 1179 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 1238

                                                                        
Query: 182  acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
            || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 1239 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 1298

                                                                        
Query: 242  ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301
            ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |
Sbjct: 1299 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 1358

                                                                        
Query: 302  caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361
            |||||| ||||||| || ||| |||| ||| || |||| ||| |  | | |  ||| || 
Sbjct: 1359 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 1418

                                                                       
Query: 362  accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
            ||  |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 1419 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 1477



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>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full
           insert sequence
          Length = 2118

 Score =  268 bits (135), Expect = 1e-68
 Identities = 303/359 (84%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
           |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 236 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 295

                                                                       
Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
           || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 296 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 355

                                                                       
Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
           || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 356 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 415

                                                                       
Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301
           ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |
Sbjct: 416 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 475

                                                                       
Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361
           |||||| ||||||| || ||| |||| ||| || |||| ||| |  | | |  ||| || 
Sbjct: 476 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 535

                                                                      
Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
           ||  |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 536 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 594



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>dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A09, full
           insert sequence
          Length = 1443

 Score =  268 bits (135), Expect = 1e-68
 Identities = 303/359 (84%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
           |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 128 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 187

                                                                       
Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
           || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 188 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 247

                                                                       
Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
           || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 248 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 307

                                                                       
Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301
           ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |
Sbjct: 308 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 367

                                                                       
Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361
           |||||| ||||||| || ||| |||| ||| || |||| ||| |  | | |  ||| || 
Sbjct: 368 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 427

                                                                      
Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
           ||  |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 428 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 486



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>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full
           insert sequence
          Length = 1828

 Score =  268 bits (135), Expect = 1e-68
 Identities = 303/359 (84%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
           |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 224 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 283

                                                                       
Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
           || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 284 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 343

                                                                       
Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
           || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 344 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 403

                                                                       
Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301
           ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |
Sbjct: 404 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 463

                                                                       
Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361
           |||||| ||||||| || ||| |||| ||| || |||| ||| |  | | |  ||| || 
Sbjct: 464 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 523

                                                                      
Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
           ||  |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 524 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 582



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>dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B06, full
           insert sequence
          Length = 1551

 Score =  268 bits (135), Expect = 1e-68
 Identities = 303/359 (84%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
           |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 205 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 264

                                                                       
Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
           || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 265 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 324

                                                                       
Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
           || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 325 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 384

                                                                       
Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccagccg 301
           ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |
Sbjct: 385 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 444

                                                                       
Query: 302 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 361
           |||||| ||||||| || ||| |||| ||| || |||| ||| |  | | |  ||| || 
Sbjct: 445 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 504

                                                                      
Query: 362 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
           ||  |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 505 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 563



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  216 bits (109), Expect = 4e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                            
Query: 62       atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
                |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 19225479 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 19225420

                                                                            
Query: 122      ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
                || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 19225419 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 19225360

                                                                            
Query: 182      acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
                || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 19225359 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 19225300

                                                                         
Query: 242      ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298
                ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 19225299 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 19225243



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                       
Query: 366      tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
                |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 19224784 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 19224730



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                            
Query: 155      gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
                |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 19205337 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 19205278

                                                        
Query: 215      gccgccgtgctgatcgccctcacattcggccagatcggcg 254
                || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 19205277 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 19205238



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 164      ggacggctgccgcagcacacgtacctcgactactc 198
                ||||||||||| |||||||| ||||| ||||||||
Sbjct: 19246989 ggacggctgcctcagcacacatacctggactactc 19246955



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  216 bits (109), Expect = 4e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                            
Query: 62       atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
                |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 19151706 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 19151647

                                                                            
Query: 122      ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
                || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 19151646 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 19151587

                                                                            
Query: 182      acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
                || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 19151586 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 19151527

                                                                         
Query: 242      ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298
                ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 19151526 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 19151470



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                       
Query: 366      tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
                |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 19151011 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 19150957



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                            
Query: 155      gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
                |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 19131564 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 19131505

                                                        
Query: 215      gccgccgtgctgatcgccctcacattcggccagatcggcg 254
                || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 19131504 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 19131465



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 164      ggacggctgccgcagcacacgtacctcgactactc 198
                ||||||||||| |||||||| ||||| ||||||||
Sbjct: 19173216 ggacggctgcctcagcacacatacctggactactc 19173182



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>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto
           from chromosome 12 of cultivar Nipponbare of ssp.
           japonica of Oryza sativa (rice), complete sequence
          Length = 127026

 Score =  216 bits (109), Expect = 4e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
           |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 466 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 525

                                                                       
Query: 122 ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
           || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 526 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 585

                                                                       
Query: 182 acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
           || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 586 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 645

                                                                    
Query: 242 ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298
           ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 646 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 702



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                   
Query: 366  tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
            |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 1161 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 1215



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                         
Query: 155   gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
             |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 20644 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 20703

                                                     
Query: 215   gccgccgtgctgatcgccctcacattcggccagatcggcg 254
             || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 20704 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 20743



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>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score =  216 bits (109), Expect = 4e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                         
Query: 62    atgtatctggtgaaggacatcggcggagccatcgggctgatggcggcggccttggtgctc 121
             |||||||| |||||||| |||||||| ||||| | ||||||||  | | |  ||||||||
Sbjct: 58809 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 58750

                                                                         
Query: 122   ctcggcacctggccggtcgtccacgccgtgctggagcgccggggacggctgccgcagcac 181
             || ||||| |||||||| |||| |||||||||||||||||| || || || |||||||||
Sbjct: 58749 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 58690

                                                                         
Query: 182   acgtacctcgactactccatcaccaacttcctggccgccgtgctgatcgccctcacattc 241
             || ||||| ||||||||||||||||||||||| |||||| | ||  ||||| |||| |||
Sbjct: 58689 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 58630

                                                                      
Query: 242   ggccagatcggcggcgacacgccagagacgcccaatttcctcactcagctcacccag 298
             ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 58629 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 58573



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                    
Query: 366   tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggc 420
             |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 58114 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggc 58060



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                         
Query: 155   gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
             |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 38667 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 38608

                                                     
Query: 215   gccgccgtgctgatcgccctcacattcggccagatcggcg 254
             || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 38607 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 38568



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 164   ggacggctgccgcagcacacgtacctcgactactc 198
             ||||||||||| |||||||| ||||| ||||||||
Sbjct: 80319 ggacggctgcctcagcacacatacctggactactc 80285



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>dbj|AK106219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H06, full
           insert sequence
          Length = 1626

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
           |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 180 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 239

                                                   
Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254
           || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 240 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 279



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>dbj|AK073792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068M22, full
           insert sequence
          Length = 1745

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
           |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 181 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 240

                                                   
Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254
           || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 241 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 280



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>dbj|AK072750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134K21, full
           insert sequence
          Length = 2066

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
           |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 557 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 616

                                                   
Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254
           || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 617 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 656



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>dbj|AK058620.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B07, full
           insert sequence
          Length = 1587

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 gagcgccggggacggctgccgcagcacacgtacctcgactactccatcaccaacttcctg 214
           |||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||| |||| 
Sbjct: 139 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 198

                                                   
Query: 215 gccgccgtgctgatcgccctcacattcggccagatcggcg 254
           || || || || ||||| ||||| ||||| ||| ||||||
Sbjct: 199 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 238



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 330     cgctggcgggcggcgtggtgatc 352
               |||||||||||||||||||||||
Sbjct: 1695353 cgctggcgggcggcgtggtgatc 1695375



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>gb|BT018631.1| Zea mays clone EL01N0503E08.d mRNA sequence
          Length = 2126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 145 cgccgtgctggagcgccgggg 165
           |||||||||||||||||||||
Sbjct: 277 cgccgtgctggagcgccgggg 297



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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 138     tcgtccacgccgtgctggagc 158
               |||||||||||||||||||||
Sbjct: 1344425 tcgtccacgccgtgctggagc 1344445



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 350     atcaccctcggcaccgtggcc 370
               |||||||||||||||||||||
Sbjct: 1788735 atcaccctcggcaccgtggcc 1788755



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     ggagccatcgggctgatggcggcg 109
              ||||||||||| ||||||||||||
Sbjct: 745995 ggagccatcggcctgatggcggcg 746018



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>ref|XM_571428.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNF04630) partial mRNA
          Length = 1816

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 tcgtccacgccgtgctggagc 158
           |||||||||||||||||||||
Sbjct: 775 tcgtccacgccgtgctggagc 795



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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 217    cgccgtgctgatcgccctcac 237
              |||||||||||||||||||||
Sbjct: 294480 cgccgtgctgatcgccctcac 294500



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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    gcgctggcgggcggcgtggt 348
              ||||||||||||||||||||
Sbjct: 609345 gcgctggcgggcggcgtggt 609326



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    gcgctggcgggcggcgtggt 348
              ||||||||||||||||||||
Sbjct: 401679 gcgctggcgggcggcgtggt 401660



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>ref|XM_601967.2| PREDICTED: Bos taurus similar to neural stem cell-derived dendrite
            regulator, transcript variant 3 (LOC523665), mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tccacgccgtgctggagcgc 160
            ||||||||||||||||||||
Sbjct: 2426 tccacgccgtgctggagcgc 2445



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>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    gcgctggcgggcggcgtggt 348
              ||||||||||||||||||||
Sbjct: 266071 gcgctggcgggcggcgtggt 266052



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   gcgctggcgggcggcgtggt 348
             ||||||||||||||||||||
Sbjct: 59712 gcgctggcgggcggcgtggt 59693



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>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    gcgctggcgggcggcgtggt 348
              ||||||||||||||||||||
Sbjct: 266129 gcgctggcgggcggcgtggt 266110



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   gcgctggcgggcggcgtggt 348
             ||||||||||||||||||||
Sbjct: 59649 gcgctggcgggcggcgtggt 59630



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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    gcgccggggacggctgccgcagca 180
              |||||||||||||| |||||||||
Sbjct: 112803 gcgccggggacggcggccgcagca 112780



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>emb|AL663039.18| Mouse DNA sequence from clone RP23-50H23 on chromosome 11 Contains a
              novel gene and a CpG island, complete sequence
          Length = 219899

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aagagcagcctcatctttgg 29
              ||||||||||||||||||||
Sbjct: 173800 aagagcagcctcatctttgg 173819



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     cattcggccagatcggcggc 256
               ||||||||||||||||||||
Sbjct: 1871714 cattcggccagatcggcggc 1871733



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ccgccgtgctgatcgccctc 235
              ||||||||||||||||||||
Sbjct: 393311 ccgccgtgctgatcgccctc 393292


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,695,776
Number of Sequences: 3902068
Number of extensions: 2695776
Number of successful extensions: 54733
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53983
Number of HSP's gapped (non-prelim): 750
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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