ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Vol... 66 3e-11
2VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin ... 65 6e-11
3VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin ... 65 6e-11
4VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein... 62 8e-10
5VDAC_PEA (P42054) Outer plastidial membrane protein porin (Volta... 60 2e-09
6VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein... 58 9e-09
7VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin ... 56 3e-08
8VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin ... 50 3e-06
9CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel al... 30 3.5
10SNPC1_MOUSE (Q8K0S9) snRNA-activating protein complex subunit 1 ... 28 7.7

>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 277

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 35/94 (37%), Positives = 43/94 (45%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY DIGKK RDLL +DY                       +KNE+I  +L TQ+K K  T
Sbjct: 7   LYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLT 66

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
           VDVKA             E   PGLK +++L  P
Sbjct: 67  VDVKANSESDLLTTITVDEFGTPGLKSIINLVVP 100



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>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 273

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 37/94 (39%), Positives = 44/94 (46%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY +IGKKARDLL RDY                       KK + I  ++Q+Q+K KN T
Sbjct: 5   LYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNIT 64

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
           VDVKA             EL  PGLK +LS   P
Sbjct: 65  VDVKANSDSNVVTTVTVDEL-TPGLKSILSFAVP 97



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>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 275

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 34/94 (36%), Positives = 44/94 (46%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY+ IGKKA+DLL RDY                       KK +  + ++Q+Q+K KN T
Sbjct: 6   LYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNIT 65

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
           VDVKA             +L  PGLK +LS   P
Sbjct: 66  VDVKANSASNVITTITADDLAAPGLKTILSFAVP 99



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>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 36)
          Length = 275

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 36/94 (38%), Positives = 41/94 (43%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY+DIGKKARDLL RDY                       KK E  L+D+ TQ+K KN T
Sbjct: 6   LYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNIT 65

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
            DVK              E   PGLK + S   P
Sbjct: 66  TDVKVDTNSNVYTTITVDEPA-PGLKTIFSFVVP 98



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>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 275

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 34/94 (36%), Positives = 40/94 (42%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY DIGKKARDLL +DY                       KK E  L D+ TQ+K KN T
Sbjct: 6   LYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNIT 65

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
            D+K              E   PG+K +LS   P
Sbjct: 66  TDIKVDTNSNLFTTITVNEPA-PGVKAILSFKVP 98



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>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 34)
          Length = 275

 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 33/94 (35%), Positives = 41/94 (43%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY +IGKKARDLL +DY                       KK +  L+D+ TQ+K KN T
Sbjct: 6   LYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVT 65

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
            D+K              E   PGLK +LS   P
Sbjct: 66  TDIKVDTNSNLFTTITVDE-AAPGLKTILSFRVP 98



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>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2|
           (Voltage-dependent anion-selective channel protein 2)
           (VDAC 2)
          Length = 273

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 33/94 (35%), Positives = 37/94 (39%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY +IGKKARDLL RDY                        K    L D+ TQVK  NFT
Sbjct: 6   LYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFT 65

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
            DVK              E   PGLK ++    P
Sbjct: 66  ADVKVSTDSSLLTTLTFDEPA-PGLKVIVQAKLP 98



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>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1|
           (Voltage-dependent anion-selective channel protein 1)
           (VDAC 1)
          Length = 275

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 28/94 (29%), Positives = 38/94 (40%)
 Frame = +1

Query: 151 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 330
           LY +IGKKARDLL +D+                       KK + +L D+  Q + KN T
Sbjct: 6   LYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNIT 65

Query: 331 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFP 432
            D+K              E   PGL+ + S   P
Sbjct: 66  TDLKVCTDSTFLITATVDE-AAPGLRSIFSFKVP 98



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>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.2)
           (Low-voltage-activated calcium channel alpha1 3.2
           subunit)
          Length = 2353

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 174 GQRSPQQGLHHGPEVHL-YHHRRQRSHNY*FKHKEK*SYLERP-PDPG 311
           G R  + G H     HL YHH     H+Y F H        RP P+PG
Sbjct: 501 GHRQRRAGRHTASVHHLVYHHHHHHHHHYHFSHGSP----RRPGPEPG 544



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>SNPC1_MOUSE (Q8K0S9) snRNA-activating protein complex subunit 1 (SNAPc subunit|
           1) (snRNA-activating protein complex 43 kDa subunit)
           (SNAPc 43 kDa subunit) (Small nuclear RNA-activating
           complex polypeptide 1)
          Length = 389

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 437 PIGKGR-ERTPFKPGLHSSGIVIVVTTLESEVAFTSTVKFLIFTWVWRSLKIASFF 273
           P G G  E     PGL +        TL S      +V+F  FT +WRS+K A+ F
Sbjct: 11  PTGAGTVEGVGIPPGLQTD-----YETLLSRFQEMDSVRFEDFTELWRSMKFATIF 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,957,818
Number of Sequences: 219361
Number of extensions: 479580
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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