ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59b10 |
|---|---|
| Clone Library Name | barley_pub |
>CD47_BOVIN (Q9N0K1) Leukocyte surface antigen CD47 precursor| (Integrin-associated protein) (IAP) Length = 303 Score = 32.7 bits (73), Expect = 0.53 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Frame = +2 Query: 77 SHKPATSIAAAYRLLT---PSVKVQLLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAI 247 S + T I YR+++ P+ + ++I+ +L A+ + + +VT Y + T AI Sbjct: 118 SREGETIIELKYRVVSWFSPNENILIVIFPVL--AILLFWGQFGIVTLKYKSNYTKEKAI 175 Query: 248 FLAVPGLTVLPVNVIVGSYI--------TNLFQDRQILVASEIMVLIGIASSFHFSSSYC 403 FL V GL +L V VIVG+++ N I++ + I++L+ F + Sbjct: 176 FLLVAGL-LLTVLVIVGAFLFIPGGYSTKNASGLGLIVLPTIILILLHYCV---FMIAMG 231 Query: 404 VAQYVVSALITFVFAEVLEGVNLSL 478 ++ + +S LI + VL V SL Sbjct: 232 MSSFTISILILQLLGYVLSVVGFSL 256
>TCR8_PASMU (P51564) Tetracycline resistance protein, class H (TETA(H))| Length = 400 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/75 (21%), Positives = 40/75 (53%) Frame = +2 Query: 143 LLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAIFLAVPGLTVLPVNVIVGSYITNLFQ 322 L YF+++ +I + + T + F+W+T+++ + LAV G+ + IV + + Sbjct: 215 LATYFIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLHIFFQAIVAGKLAQKWG 274 Query: 323 DRQILVASEIMVLIG 367 ++ ++ S + ++G Sbjct: 275 EKTTIMISMSIDMMG 289
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Frame = +2 Query: 110 YRLLTPSVKVQLLIYFMLKFAMEILLSESSVVTTF------YFNWSTSTVAIFLAVPGLT 271 +R++ ++ L+++F+L ++ + + T+F YF+ +T+ +T Sbjct: 924 HRIVNDTIFTNLILFFILLSSISLAAEDPVQHTSFRNHILFYFDIVFTTIFTIEIALKMT 983 Query: 272 VLPVNVIVGSYITNLFQDRQILVASEIMVLIGIASS 379 + GS+ N F +LV S ++ GI SS Sbjct: 984 AYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQSS 1019
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Frame = +2 Query: 110 YRLLTPSVKVQLLIYFMLKFAMEILLSESSVVTTF------YFNWSTSTVAIFLAVPGLT 271 +R++ ++ L+++F+L ++ + + T+F YF+ +T+ +T Sbjct: 924 HRIVNDTIFTNLILFFILLSSISLAAEDPVQHTSFRNHILFYFDIVFTTIFTIEIALKMT 983 Query: 272 VLPVNVIVGSYITNLFQDRQILVASEIMVLIGIASS 379 + GS+ N F +LV S ++ GI SS Sbjct: 984 AYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQSS 1019
>PP4R2_CANGA (Q6FUC3) Serine/threonine-protein phosphatase 4 regulatory subunit| 2 (PP4R2) Length = 402 Score = 30.0 bits (66), Expect = 3.4 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Frame = -3 Query: 478 EGQVDPFKNLGEYKRDEGRHDVLCDAVAGAEVEARGDADQDHDLRRHQDLPV----LKQV 311 + Q D ++ + DEG D D E E GD D+D D +H D+ V +K+ Sbjct: 278 DSQEDDDEDSDYIEEDEGDEDEDDDDDEEEEEEEDGDEDEDED--KHFDIKVEEEAVKED 335 Query: 310 GDIASNNDINRKNRQPGNS*KDGHGARGPVKIERSDDTR 194 + N +N N +S ++ G + I +DTR Sbjct: 336 ANTTRNELMNVSNNSDDSSLQNDTG----IAISSQNDTR 370
>COBS_SULAC (Q4JBK2) Cobalamin synthase (EC 2.-.-.-)| Length = 252 Score = 30.0 bits (66), Expect = 3.4 Identities = 22/101 (21%), Positives = 50/101 (49%) Frame = +2 Query: 155 FMLKFAMEILLSESSVVTTFYFNWSTSTVAIFLAVPGLTVLPVNVIVGSYITNLFQDRQI 334 F++ F++ ++ + + V+ +F + +A A+ L ++ I GSY+ +F D+ Sbjct: 113 FLVYFSIFLIATLNLNVSNLWFFLPSEVLARASAISLLGLM--KPIPGSYLGKVFHDKMR 170 Query: 335 LVASEIMVLIGIASSFHFSSSYCVAQYVVSALITFVFAEVL 457 I L+ + FSS + YV+ L+ ++ A+++ Sbjct: 171 DKLFSIKFLLVQVFAILFSSPVLILAYVILLLVFYLMAKLV 211
>BAT1_HUMAN (P82251) B(0,+)-type amino acid transporter 1 (B(0,+)AT)| (Glycoprotein-associated amino acid transporter b0,+AT1) Length = 487 Score = 30.0 bits (66), Expect = 3.4 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 9/105 (8%) Frame = +2 Query: 143 LLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAI-FLAVPGL----TVLPVNVIVGSYI 307 L++ FA+ L V FY + + LA + TV ++V +GSY+ Sbjct: 117 LIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYV 176 Query: 308 TNLFQDRQILVASEI----MVLIGIASSFHFSSSYCVAQYVVSAL 430 N+F ++++ + I +VL+ ++ +F +S+ AQ V A+ Sbjct: 177 QNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAI 221
>GLHA_ICTPU (Q9YGP3) Glycoprotein hormones alpha chain precursor (Gonadotropin| alpha chain) (GTH-alpha) Length = 116 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 36 TQRITATMKKAVKRVINQQHRLLQHTDC 119 T T + K VKRVI +L+ HTDC Sbjct: 79 TSEATCCVAKEVKRVIVNDVKLMNHTDC 106
>SPDYA_MOUSE (Q5IBH7) Speedy protein A (Speedy-1) (Spy1) (Rapid inducer of G2/M| progression in oocytes A) (RINGO A) (mSpy/Ringo A) Length = 310 Score = 28.9 bits (63), Expect = 7.6 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Frame = -3 Query: 424 RHDVL-CDAVAGAEVEARGDADQDHDLRRHQDL--PVLKQVGDIASNNDINRKNRQPGNS 254 RH+ + C+ + + +++ H R+ L P+LK + + NN N K+++P Sbjct: 2 RHNQMYCETPPTVTIHVKSGSNRSHQTRKPISLKRPILKDSWEASENNAQNNKSKRP--- 58 Query: 253 *KDGHGARGP-VKIERSDDTRF 191 RGP + I+R + T F Sbjct: 59 -------RGPCLIIQRQEMTAF 73
>SECY_PAVLU (P28540) Preprotein translocase secY subunit| Length = 419 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = +2 Query: 194 SSVVTTFYFNWSTSTVAIFLAVPGLTVLPVNVIVGSYITNLFQDRQILVASEIMVLIGIA 373 S+ + +F FNW++ ++ F+ +T +V +++ + +R I S +++LIG Sbjct: 127 SNSLRSFVFNWNS--ISYFVVAAAVTT---GSLVLVWLSEVITERGIGNGSSLLILIGNL 181 Query: 374 SSFHF 388 S F F Sbjct: 182 SRFRF 186
>GLHA_CLAGA (P53542) Glycoprotein hormones alpha chain precursor (Gonadotropin| alpha chain) (GTH-alpha) Length = 116 Score = 28.9 bits (63), Expect = 7.6 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 36 TQRITATMKKAVKRVINQQHRLLQHTDC 119 T T + K VKRVI +L+ HTDC Sbjct: 79 TSEATCCVAKEVKRVIVNDVKLVNHTDC 106
>NU4M_CAEEL (P24892) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 409 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 Query: 116 LLTPSVKVQLLIYFMLKFAMEILLSESSVVTTFYFNWSTSTV 241 L++ S+ V + IYF++ F + L SS++ Y N++T V Sbjct: 348 LISKSMFVMIFIYFVVSFYYSLFLITSSLMGKGYHNFNTWNV 389
>ERG3_LEPMC (Q8J207) C-5 sterol desaturase (EC 1.3.3.-) (Sterol-C5-desaturase)| (Ergosterol delta 5,6 desaturase) Length = 356 Score = 28.9 bits (63), Expect = 7.6 Identities = 13/40 (32%), Positives = 16/40 (40%) Frame = -2 Query: 347 QTPPRFACPETGW*YSFQQ*H*PEEPSAREQLERWPRCSW 228 Q P +A P W Y + EPS + WPR W Sbjct: 43 QEPTAYALPHASWQYEPATKYFSIEPSKYAYMSSWPRDDW 82
>SUV3_DROME (P20193) Protein suppressor of variegation 3-7| Length = 1250 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = -3 Query: 478 EGQVDPFKNLGEYKRDEGRHDVLCDAVA---GAEVEARGDADQDHDLRRHQDLPVLKQVG 308 +G ++ +NL KR R ++V G E E +++ + QD PV+ G Sbjct: 341 KGHMEALRNLDSDKRSRKRKRSKSNSVTNSGGDEAEREKESEPEVGPEDAQDTPVVMMNG 400 Query: 307 DIASNND 287 D+ S +D Sbjct: 401 DVDSGDD 407
>RPOB_SACOF (Q6ENX3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/68 (29%), Positives = 35/68 (51%) Frame = +2 Query: 101 AAAYRLLTPSVKVQLLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAIFLAVPGLTVLP 280 A Y+LL PS+K + +Y L ++ E+ +S + F F+ T++I +P + L Sbjct: 54 AKGYQLLEPSIKERNAVYESLTYSSELYVSARLI---FGFDVQKQTISIG-NIPIMNSLG 109 Query: 281 VNVIVGSY 304 +I G Y Sbjct: 110 TFIINGIY 117
>RPOB_SACHY (Q6L3A7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/68 (29%), Positives = 35/68 (51%) Frame = +2 Query: 101 AAAYRLLTPSVKVQLLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAIFLAVPGLTVLP 280 A Y+LL PS+K + +Y L ++ E+ +S + F F+ T++I +P + L Sbjct: 54 AKGYQLLEPSIKERNAVYESLTYSSELYVSARLI---FGFDVQKQTISIG-NIPIMNSLG 109 Query: 281 VNVIVGSY 304 +I G Y Sbjct: 110 TFIINGIY 117
>RPOB_MAIZE (P16023) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/68 (29%), Positives = 35/68 (51%) Frame = +2 Query: 101 AAAYRLLTPSVKVQLLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAIFLAVPGLTVLP 280 A Y+LL PS+K + +Y L ++ E+ +S + F F+ T++I +P + L Sbjct: 54 AKGYQLLEPSIKERNAVYESLTYSSELYVSARLI---FGFDVQKETISIG-NIPIMNSLG 109 Query: 281 VNVIVGSY 304 +I G Y Sbjct: 110 TFIINGIY 117
>MDR22_ARATH (Q9LHK4) Putative multidrug resistance protein 22 (P-glycoprotein| 8) Length = 1241 Score = 28.5 bits (62), Expect = 9.9 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Frame = +2 Query: 80 HKPATSIAAAYRLLTPSVKVQLLIYFMLKFAMEILLSESSVVTTFYFNWSTSTVAI---- 247 H +T + +LL+ V + F M I + + +V + YF+W + VAI Sbjct: 140 HTISTDTSLIQQLLSEKVPI---------FLMHISVFITGLVFSAYFSWRLTVVAIPTLV 190 Query: 248 FLAVPGLTVLPVNVIVGSYITNL 316 L +PGL I G Y+ +L Sbjct: 191 LLLIPGL-------IYGKYLVHL 206
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 110 MLQQSMLLVYDSLYGLLHCRRYPLRFH 30 +L +++ + + L G HCR Y RFH Sbjct: 3619 ILHDAVVFLIEQLAGAKHCRNYKFRFH 3645
>COMGB_BACHD (Q9K920) ComG operon protein 2 homolog| Length = 323 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 112 VCCSNRCCWFMTLFTAFFIVAVIL 41 + CS + W LFTAFF+VA++L Sbjct: 135 IACSEKLPW---LFTAFFVVAILL 155
>YKT2_CAEEL (Q5CZ51) Hypothetical protein C07A9.12| Length = 235 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 109 CCSNRCCWFMTLFTAFFIVAVILCV 35 CC CC T+FT+ F + VIL + Sbjct: 176 CCGYDCCSNSTIFTSIFSLLVILLI 200
>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)| Length = 3969 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 110 MLQQSMLLVYDSLYGLLHCRRYPLRFH 30 +L +++ + + L G HCR Y RFH Sbjct: 3722 ILHDAVVFLIEQLSGAKHCRNYKFRFH 3748
>XYLR_ECOLI (P0ACI3) Xylose operon regulatory protein| Length = 392 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +2 Query: 317 FQDRQI--LVASEIMVLIGIASSFHFSSSYCVAQYVVS---ALITFVFAEVLE-GVN 469 F D+QI +A + ++G+ S+H + SY Y+ + AL+ F + E GVN Sbjct: 64 FDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN 120
>XYLR_ECOL6 (P0ACI4) Xylose operon regulatory protein| Length = 392 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +2 Query: 317 FQDRQI--LVASEIMVLIGIASSFHFSSSYCVAQYVVS---ALITFVFAEVLE-GVN 469 F D+QI +A + ++G+ S+H + SY Y+ + AL+ F + E GVN Sbjct: 64 FDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN 120
>XYLR_ECO57 (P0ACI5) Xylose operon regulatory protein| Length = 392 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +2 Query: 317 FQDRQI--LVASEIMVLIGIASSFHFSSSYCVAQYVVS---ALITFVFAEVLE-GVN 469 F D+QI +A + ++G+ S+H + SY Y+ + AL+ F + E GVN Sbjct: 64 FDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,489,757 Number of Sequences: 219361 Number of extensions: 1087975 Number of successful extensions: 3137 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3132 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
