| Clone Name | bast59b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 254 bits (128), Expect = 2e-64 Identities = 275/324 (84%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagaggcggaatgaaaacgcagaggataacggcgacaatgaagaa 64 |||| ||| ||||||||||| | | ||||||| | ||||||||| | ||| ||||||||| Sbjct: 27719425 ctcatagatgcaaaggagagtctggatgaaaatggagaggataatgacgaaaatgaagaa 27719484 Query: 65 ggccgtaaagagagtcataaaccagcaacatcgattgctgcagcatacagattgctcacg 124 | || | |||| ||||||||||||||||| |||||||||||||||||||||| || Sbjct: 27719485 gaccctgaagactcacataaaccagcaacatcacttgctgcagcatacagattgctgaca 27719544 Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaagtttgcaatggagattcta 184 ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 27719545 ccatctgtgaaagttcagctattgatctactttatgctcaagtttgcaatggaaattcta 27719604 Query: 185 ctctccgaatctagtgtcgtcactacgttctattttaactggtccacgagcaccgtggcc 244 || ||||| || || || |||||||||||||| || |||||||| || |||||||||||| Sbjct: 27719605 ctgtccgagtcgagcgtggtcactacgttctacttcaactggtctacaagcaccgtggcc 27719664 Query: 245 atctttctagctgttcccgggctgacggttcttccggttaatgtcattgttggaagctat 304 || |||||||| |||| ||| |||| |||||||| || |||||||| ||||| |||||| Sbjct: 27719665 atgtttctagcagttcttgggttgacagttcttcctgtaaatgtcatcgttgggagctat 27719724 Query: 305 atcaccaacctgtttcaggacagg 328 |||||||| |||| || |||||| Sbjct: 27719725 gtcaccaacttgttccaagacagg 27719748 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 326 aggcaaatcttggtggcgtctgagatcatggtcctgatcggcatcgcctcgagcttccac 385 |||||||| || ||||| || || |||||||||||||||||||| ||| |||||||| Sbjct: 27719846 aggcaaattttagtggcatcggaaatcatggtcctgatcggcatagccatgagcttccgt 27719905 Query: 386 ttcagctccagctactgcgtcgcacagtacgtcgtgtcggccctcatcacgtttgtattc 445 |||| ||| ||||| |||| | || |||||| ||||| ||||||||||| || ||| Sbjct: 27719906 ttcacctctcactactccgtcccgcaatacgtctcctcggctctcatcacgttcgtcttc 27719965 Query: 446 gccgaggttcttgaagg 462 || ||||| || ||||| Sbjct: 27719966 gctgaggtgctcgaagg 27719982 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gtgaaggttcagttattgat 150 |||||||||||||||||||| Sbjct: 35679089 gtgaaggttcagttattgat 35679108
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 254 bits (128), Expect = 2e-64 Identities = 275/324 (84%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagaggcggaatgaaaacgcagaggataacggcgacaatgaagaa 64 |||| ||| ||||||||||| | | ||||||| | ||||||||| | ||| ||||||||| Sbjct: 4758 ctcatagatgcaaaggagagtctggatgaaaatggagaggataatgacgaaaatgaagaa 4817 Query: 65 ggccgtaaagagagtcataaaccagcaacatcgattgctgcagcatacagattgctcacg 124 | || | |||| ||||||||||||||||| |||||||||||||||||||||| || Sbjct: 4818 gaccctgaagactcacataaaccagcaacatcacttgctgcagcatacagattgctgaca 4877 Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaagtttgcaatggagattcta 184 ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 4878 ccatctgtgaaagttcagctattgatctactttatgctcaagtttgcaatggaaattcta 4937 Query: 185 ctctccgaatctagtgtcgtcactacgttctattttaactggtccacgagcaccgtggcc 244 || ||||| || || || |||||||||||||| || |||||||| || |||||||||||| Sbjct: 4938 ctgtccgagtcgagcgtggtcactacgttctacttcaactggtctacaagcaccgtggcc 4997 Query: 245 atctttctagctgttcccgggctgacggttcttccggttaatgtcattgttggaagctat 304 || |||||||| |||| ||| |||| |||||||| || |||||||| ||||| |||||| Sbjct: 4998 atgtttctagcagttcttgggttgacagttcttcctgtaaatgtcatcgttgggagctat 5057 Query: 305 atcaccaacctgtttcaggacagg 328 |||||||| |||| || |||||| Sbjct: 5058 gtcaccaacttgttccaagacagg 5081 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 326 aggcaaatcttggtggcgtctgagatcatggtcctgatcggcatcgcctcgagcttccac 385 |||||||| || ||||| || || |||||||||||||||||||| ||| |||||||| Sbjct: 5179 aggcaaattttagtggcatcggaaatcatggtcctgatcggcatagccatgagcttccgt 5238 Query: 386 ttcagctccagctactgcgtcgcacagtacgtcgtgtcggccctcatcacgtttgtattc 445 |||| ||| ||||| |||| | || |||||| ||||| ||||||||||| || ||| Sbjct: 5239 ttcacctctcactactccgtcccgcaatacgtctcctcggctctcatcacgttcgtcttc 5298 Query: 446 gccgaggttcttgaagg 462 || ||||| || ||||| Sbjct: 5299 gctgaggtgctcgaagg 5315
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 254 bits (128), Expect = 2e-64 Identities = 275/324 (84%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagaggcggaatgaaaacgcagaggataacggcgacaatgaagaa 64 |||| ||| ||||||||||| | | ||||||| | ||||||||| | ||| ||||||||| Sbjct: 105291 ctcatagatgcaaaggagagtctggatgaaaatggagaggataatgacgaaaatgaagaa 105350 Query: 65 ggccgtaaagagagtcataaaccagcaacatcgattgctgcagcatacagattgctcacg 124 | || | |||| ||||||||||||||||| |||||||||||||||||||||| || Sbjct: 105351 gaccctgaagactcacataaaccagcaacatcacttgctgcagcatacagattgctgaca 105410 Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaagtttgcaatggagattcta 184 ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 105411 ccatctgtgaaagttcagctattgatctactttatgctcaagtttgcaatggaaattcta 105470 Query: 185 ctctccgaatctagtgtcgtcactacgttctattttaactggtccacgagcaccgtggcc 244 || ||||| || || || |||||||||||||| || |||||||| || |||||||||||| Sbjct: 105471 ctgtccgagtcgagcgtggtcactacgttctacttcaactggtctacaagcaccgtggcc 105530 Query: 245 atctttctagctgttcccgggctgacggttcttccggttaatgtcattgttggaagctat 304 || |||||||| |||| ||| |||| |||||||| || |||||||| ||||| |||||| Sbjct: 105531 atgtttctagcagttcttgggttgacagttcttcctgtaaatgtcatcgttgggagctat 105590 Query: 305 atcaccaacctgtttcaggacagg 328 |||||||| |||| || |||||| Sbjct: 105591 gtcaccaacttgttccaagacagg 105614 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 326 aggcaaatcttggtggcgtctgagatcatggtcctgatcggcatcgcctcgagcttccac 385 |||||||| || ||||| || || |||||||||||||||||||| ||| |||||||| Sbjct: 105712 aggcaaattttagtggcatcggaaatcatggtcctgatcggcatagccatgagcttccgt 105771 Query: 386 ttcagctccagctactgcgtcgcacagtacgtcgtgtcggccctcatcacgtttgtattc 445 |||| ||| ||||| |||| | || |||||| ||||| ||||||||||| || ||| Sbjct: 105772 ttcacctctcactactccgtcccgcaatacgtctcctcggctctcatcacgttcgtcttc 105831 Query: 446 gccgaggttcttgaagg 462 || ||||| || ||||| Sbjct: 105832 gctgaggtgctcgaagg 105848
>gb|AY112132.1| Zea mays CL35113_1 mRNA sequence Length = 1069 Score = 109 bits (55), Expect = 9e-21 Identities = 163/199 (81%) Strand = Plus / Minus Query: 105 cagcatacagattgctcacgccatccgtgaaggttcagttattgatctacttcatgctca 164 |||||||||||||||| || ||||| ||||||| ||| || |||| ||||||||||||| Sbjct: 780 cagcatacagattgctaactccatctgtgaaggcccagctactgatatacttcatgctca 721 Query: 165 agtttgcaatggagattctactctccgaatctagtgtcgtcactacgttctattttaact 224 ||| |||||||| || ||||| || ||||| ||||| ||||| || | |||||||| || Sbjct: 720 agtacgcaatggaaatactactatcagaatcgagtgttgtcaccacatactattttagct 661 Query: 225 ggtccacgagcaccgtggccatctttctagctgttcccgggctgacggttcttccggtta 284 |||| || || ||||||| ||||||||||| ||| || | ||||||||||| || | Sbjct: 660 ggtctacaagtgccgtggctatctttctagcgattcttggattaacggttcttccagtaa 601 Query: 285 atgtcattgttggaagcta 303 ||| | ||||||||||||| Sbjct: 600 atgcctttgttggaagcta 582
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence Length = 89884 Score = 99.6 bits (50), Expect = 8e-18 Identities = 158/194 (81%) Strand = Plus / Plus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 |||||||||| ||||| |||||||||||||| | || |||||| ||| |||| || |||| Sbjct: 32775 aggttcagttgttgatatacttcatgctcaaatatgtaatggaaattttactatcagaat 32834 Query: 195 ctagtgtcgtcactacgttctattttaactggtccacgagcaccgtggccatctttctag 254 ||||||| ||||| || | ||| ||||||||||| || ||||| || ||||| ||||| | Sbjct: 32835 ctagtgttgtcacaacatactactttaactggtcaacaagcacagttgccatttttcttg 32894 Query: 255 ctgttcccgggctgacggttcttccggttaatgtcattgttggaagctatatcaccaacc 314 ||| | || |||| |||||||| || || ||||||||||||||||||| | |||| Sbjct: 32895 ctggccttggcttgacagttcttcctgtaaacatcattgttggaagctatataagcaaca 32954 Query: 315 tgtttcaggacagg 328 ||||| | |||||| Sbjct: 32955 tgtttgacgacagg 32968
>ref|XM_473572.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2178 Score = 95.6 bits (48), Expect = 1e-16 Identities = 204/256 (79%) Strand = Plus / Plus Query: 105 cagcatacagattgctcacgccatccgtgaaggttcagttattgatctacttcatgctca 164 ||||||||| |||| | || ||||| |||||||| ||| ||||||| ||||| ||||||| Sbjct: 1583 cagcatacaaattgttgacaccatctgtgaaggtccagctattgatatactttatgctca 1642 Query: 165 agtttgcaatggagattctactctccgaatctagtgtcgtcactacgttctattttaact 224 ||| || ||||| || | ||||| ||||| |||||| |||| || | ||||||||||| Sbjct: 1643 agtacgctatggaaatcttgctctctgaatcaagtgtcatcaccacatactattttaact 1702 Query: 225 ggtccacgagcaccgtggccatctttctagctgttcccgggctgacggttcttccggtta 284 |||| || ||| | ||||| |||||| |||| ||| ||| || ||||| || || | Sbjct: 1703 ggtctacaagcgctgtggctatctttttagcgattcttgggtgtactgttctccctgtca 1762 Query: 285 atgtcattgttggaagctatatcaccaacctgtttcaggacaggcaaatcttggtggcgt 344 | | ||||||||||||||| || || || | || ||||||||||||| |||||||| | Sbjct: 1763 acgccattgttggaagctacattacaaatttattcgaggacaggcaaattttggtggcat 1822 Query: 345 ctgagatcatggtcct 360 |||| ||||||||||| Sbjct: 1823 ctgaaatcatggtcct 1838
>dbj|AK066068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056J05, full insert sequence Length = 2706 Score = 95.6 bits (48), Expect = 1e-16 Identities = 204/256 (79%) Strand = Plus / Plus Query: 105 cagcatacagattgctcacgccatccgtgaaggttcagttattgatctacttcatgctca 164 ||||||||| |||| | || ||||| |||||||| ||| ||||||| ||||| ||||||| Sbjct: 1964 cagcatacaaattgttgacaccatctgtgaaggtccagctattgatatactttatgctca 2023 Query: 165 agtttgcaatggagattctactctccgaatctagtgtcgtcactacgttctattttaact 224 ||| || ||||| || | ||||| ||||| |||||| |||| || | ||||||||||| Sbjct: 2024 agtacgctatggaaatcttgctctctgaatcaagtgtcatcaccacatactattttaact 2083 Query: 225 ggtccacgagcaccgtggccatctttctagctgttcccgggctgacggttcttccggtta 284 |||| || ||| | ||||| |||||| |||| ||| ||| || ||||| || || | Sbjct: 2084 ggtctacaagcgctgtggctatctttttagcgattcttgggtgtactgttctccctgtca 2143 Query: 285 atgtcattgttggaagctatatcaccaacctgtttcaggacaggcaaatcttggtggcgt 344 | | ||||||||||||||| || || || | || ||||||||||||| |||||||| | Sbjct: 2144 acgccattgttggaagctacattacaaatttattcgaggacaggcaaattttggtggcat 2203 Query: 345 ctgagatcatggtcct 360 |||| ||||||||||| Sbjct: 2204 ctgaaatcatggtcct 2219
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58 Length = 193550 Score = 89.7 bits (45), Expect = 8e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 ||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||| |||| Sbjct: 91097 aggttcaactattgatatacttcatgctcaagtatgcaatggagattcttctctctgaat 91038 Query: 195 ctagtgtcgtcac 207 |||||||| |||| Sbjct: 91037 ctagtgtcatcac 91025
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project) Length = 139316 Score = 89.7 bits (45), Expect = 8e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 ||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||| |||| Sbjct: 62010 aggttcaactattgatatacttcatgctcaagtatgcaatggagattcttctctctgaat 61951 Query: 195 ctagtgtcgtcac 207 |||||||| |||| Sbjct: 61950 ctagtgtcatcac 61938
>ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 mRNA, complete cds Length = 2429 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 144 tattgatctacttcatgctcaagtttgcaatggagattctactctccgaatctagtgtcg 203 ||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||| Sbjct: 1821 tattgatatacttcatgctcaagtatgcaatggagattcttctctctgaatctagtgtca 1880 Query: 204 tcac 207 |||| Sbjct: 1881 tcac 1884
>gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, complete cds Length = 2428 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 144 tattgatctacttcatgctcaagtttgcaatggagattctactctccgaatctagtgtcg 203 ||||||| |||||||||||||||| ||||||| ||||||| ||||| |||||||||||| Sbjct: 1820 tattgatatacttcatgctcaagtatgcaatgaagattcttctctctgaatctagtgtca 1879 Query: 204 tcac 207 |||| Sbjct: 1880 tcac 1883
>ref|NM_117250.1| Arabidopsis thaliana unknown protein AT4G11810 mRNA, complete cds Length = 2124 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 134 aaggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaa 193 |||||||| || ||||| ||||||||||| |||| |||||||||||||||||| || ||| Sbjct: 1558 aaggttcaattgttgatatacttcatgcttaagtatgcaatggagattctactatcagaa 1617 Query: 194 tctagtgt 201 || ||||| Sbjct: 1618 tcaagtgt 1625 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 ccggttaatgtcattgttggaagctatatcaccaacctgtt 318 |||||||| || |||||||||||||||||| |||| |||| Sbjct: 1702 ccggttaacctcgttgttggaagctatatcagcaacatgtt 1742
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 ||||||| || ||||| ||||||||||| |||| |||||||||||||||||| || |||| Sbjct: 158640 aggttcaattgttgatatacttcatgcttaagtatgcaatggagattctactatcagaat 158699 Query: 195 ctagtgt 201 | ||||| Sbjct: 158700 caagtgt 158706 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 ccggttaatgtcattgttggaagctatatcaccaacctgtt 318 |||||||| || |||||||||||||||||| |||| |||| Sbjct: 158783 ccggttaacctcgttgttggaagctatatcagcaacatgtt 158823
>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project) Length = 90824 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 ||||||| || ||||| ||||||||||| |||| |||||||||||||||||| || |||| Sbjct: 21340 aggttcaattgttgatatacttcatgcttaagtatgcaatggagattctactatcagaat 21399 Query: 195 ctagtgt 201 | ||||| Sbjct: 21400 caagtgt 21406 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 ccggttaatgtcattgttggaagctatatcaccaacctgtt 318 |||||||| || |||||||||||||||||| |||| |||| Sbjct: 21483 ccggttaacctcgttgttggaagctatatcagcaacatgtt 21523
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/121 (80%) Strand = Plus / Plus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 |||| ||| ||||||| ||||| |||||||||| || ||||| || | ||||| |||| Sbjct: 28841254 aggtccagctattgatatactttatgctcaagtacgctatggaaatcttgctctctgaat 28841313 Query: 195 ctagtgtcgtcactacgttctattttaactggtccacgagcaccgtggccatctttctag 254 | |||||| |||| || | ||||||||||||||| || ||| | ||||| |||||| ||| Sbjct: 28841314 caagtgtcatcaccacatactattttaactggtctacaagcgctgtggctatctttttag 28841373 Query: 255 c 255 | Sbjct: 28841374 c 28841374 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 325 caggcaaatcttggtggcgtctgagatcatggtcct 360 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 28841592 caggcaaattttggtggcatctgaaatcatggtcct 28841627
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/121 (80%) Strand = Plus / Plus Query: 135 aggttcagttattgatctacttcatgctcaagtttgcaatggagattctactctccgaat 194 |||| ||| ||||||| ||||| |||||||||| || ||||| || | ||||| |||| Sbjct: 53316 aggtccagctattgatatactttatgctcaagtacgctatggaaatcttgctctctgaat 53375 Query: 195 ctagtgtcgtcactacgttctattttaactggtccacgagcaccgtggccatctttctag 254 | |||||| |||| || | ||||||||||||||| || ||| | ||||| |||||| ||| Sbjct: 53376 caagtgtcatcaccacatactattttaactggtctacaagcgctgtggctatctttttag 53435 Query: 255 c 255 | Sbjct: 53436 c 53436 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 325 caggcaaatcttggtggcgtctgagatcatggtcct 360 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 53654 caggcaaattttggtggcatctgaaatcatggtcct 53689
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaagtttgcaatggagattcta 184 ||||| |||||||| ||| | ||||||||||||||||||||| || |||||||| || Sbjct: 20083847 ccatcggtgaaggtccagctgctgatctacttcatgctcaagtacgccatggagatcctc 20083788 Query: 185 ctctccgaatc 195 ||| ||||||| Sbjct: 20083787 ctcgccgaatc 20083777
>dbj|AP006859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05 Length = 41326 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaagtttgcaatggagattcta 184 ||||| |||||||| ||| | ||||||||||||||||||||| || |||||||| || Sbjct: 18773 ccatcggtgaaggtccagctgctgatctacttcatgctcaagtacgccatggagatcctc 18714 Query: 185 ctctccgaatc 195 ||| ||||||| Sbjct: 18713 ctcgccgaatc 18703
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 48.1 bits (24), Expect = 0.027 Identities = 45/52 (86%) Strand = Plus / Plus Query: 117 tgctcacgccatccgtgaaggttcagttattgatctacttcatgctcaagtt 168 |||| ||||| || |||||||| ||| | |||||||||||||||||||||| Sbjct: 100915 tgctgacgccgtcggtgaaggtgcagctgctgatctacttcatgctcaagtt 100966
>ref|NM_104979.2| Arabidopsis thaliana unknown protein AT1G63010 transcript variant AT1G63010.1 mRNA, complete cds Length = 2534 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaa 165 ||||| || |||||||| | |||||||||||||||||||| Sbjct: 1704 ccatctgttaaggttcaactgttgatctacttcatgctcaa 1744
>ref|NM_202344.2| Arabidopsis thaliana unknown protein AT1G63010 transcript variant AT1G63010.2 mRNA, complete cds Length = 2793 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaa 165 ||||| || |||||||| | |||||||||||||||||||| Sbjct: 1963 ccatctgttaaggttcaactgttgatctacttcatgctcaa 2003
>gb|BT000805.1| Arabidopsis thaliana clone At1g63010 mRNA sequence Length = 1468 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaa 165 ||||| || |||||||| | |||||||||||||||||||| Sbjct: 637 ccatctgttaaggttcaactgttgatctacttcatgctcaa 677
>gb|AY035094.1| Arabidopsis thaliana unknown protein (At1g63010) mRNA, complete cds Length = 2013 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 125 ccatccgtgaaggttcagttattgatctacttcatgctcaa 165 ||||| || |||||||| | |||||||||||||||||||| Sbjct: 1367 ccatctgttaaggttcaactgttgatctacttcatgctcaa 1407
>gb|AC159639.2| Mus musculus BAC clone RP24-79M15 from chromosome 12, complete sequence Length = 220032 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ctcacagaggcaaaggagagg 25 ||||||||||||||||||||| Sbjct: 128069 ctcacagaggcaaaggagagg 128049
>emb|AL831771.5| Mouse DNA sequence from clone RP23-336F13 on chromosome X, complete sequence Length = 207974 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagagg 25 ||||||||||||||||||||| Sbjct: 180151 ctcacagaggcaaaggagagg 180171
>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence Length = 205086 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ctcacagaggcaaaggagagg 25 ||||||||||||||||||||| Sbjct: 181189 ctcacagaggcaaaggagagg 181169
>gb|AC139379.4| Mus musculus BAC clone RP23-233P1 from chromosome 3, complete sequence Length = 168532 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ctcacagaggcaaaggagagg 25 ||||||||||||||||||||| Sbjct: 21953 ctcacagaggcaaaggagagg 21933
>gb|AC161053.5| Mus musculus BAC clone RP23-381G13 from chromosome 3, complete sequence Length = 205395 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagagg 25 ||||||||||||||||||||| Sbjct: 76198 ctcacagaggcaaaggagagg 76218
>emb|AL808146.3| Mouse DNA sequence from clone RP23-52L10 on chromosome X, complete sequence Length = 159820 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 aagctatatcaccaacctgtt 318 ||||||||||||||||||||| Sbjct: 149749 aagctatatcaccaacctgtt 149729
>ref|NM_185492.1| Oryza sativa (japonica cultivar-group), Ozsa8589 predicted mRNA Length = 1761 Score = 40.1 bits (20), Expect = 6.6 Identities = 74/92 (80%) Strand = Plus / Plus Query: 95 tcgattgctgcagcatacagattgctcacgccatccgtgaaggttcagttattgatctac 154 ||||||| | |||||||||||||||| || || || || ||||| || || |||| || Sbjct: 1492 tcgattggttcagcatacagattgcttacaccttcagtaaaggtccaattgctgatatat 1551 Query: 155 ttcatgctcaagtttgcaatggagattctact 186 ||||||||||| | || ||||||||| |||| Sbjct: 1552 ttcatgctcaaatacgcgatggagattttact 1583
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 452 gttcttgaaggggtcaacctgtccctcc 479 ||||||||||||| ||||| |||||||| Sbjct: 332282 gttcttgaaggggccaacccgtccctcc 332255
>gb|AC107791.14| Mus musculus chromosome 3, clone RP23-167O3, complete sequence Length = 186244 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 cagaggcaaaggagaggcggaatg 32 ||||||||||||||||| |||||| Sbjct: 32375 cagaggcaaaggagagggggaatg 32398
>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence Length = 186195 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagaggcgg 28 |||| ||||||||||||||||||| Sbjct: 142468 ctcagagaggcaaaggagaggcgg 142491
>ref|XM_742893.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g03580) partial mRNA Length = 1014 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ggtccacgagcaccgtggcc 244 |||||||||||||||||||| Sbjct: 880 ggtccacgagcaccgtggcc 861
>gb|AC122404.4| Mus musculus BAC clone RP24-116G1 from chromosome 8, complete sequence Length = 188197 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 cagaggcaaaggagaggcggaatg 32 ||||||||||||||||| |||||| Sbjct: 92834 cagaggcaaaggagaggtggaatg 92857
>gb|AY130223.1| Astasia longa large subunit ribosomal RNA gene, partial sequence Length = 1358 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 agcaacatcgattgctgcag 107 |||||||||||||||||||| Sbjct: 11 agcaacatcgattgctgcag 30
>emb|X89010.1|SGDNASTRS S.glaucescens genes strU, strX, strV and strW for 5'-hydroxystreptomycin pruduction and transport polypeptides Length = 5751 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 agctgttcccgggctgacgg 272 |||||||||||||||||||| Sbjct: 231 agctgttcccgggctgacgg 212
>emb|AJ006985.1|SGAJ6985 Streptomyces glaucescens GLA.0 gene cluster for 5'-hydroxystreptomycin biosynthesis Length = 25459 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 agctgttcccgggctgacgg 272 |||||||||||||||||||| Sbjct: 5521 agctgttcccgggctgacgg 5540
>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a zinc finger protein pseudogene, a chaperonin subunit 7 (eta) (Cct7) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 217352 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 cagaggcaaaggagaggcggaatg 32 ||||||||||||||||| |||||| Sbjct: 45678 cagaggcaaaggagaggaggaatg 45701
>gb|AC010030.10| Drosophila melanogaster 3L BAC RP98-2C14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 200859 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cagcaacatcgattgctgca 106 |||||||||||||||||||| Sbjct: 119558 cagcaacatcgattgctgca 119539
>emb|X82177.1|SGSTRQ Streptomyces glaucescens strQ gene for alpha-D-glucose-1-phosphate cytidylyl-transferase Length = 900 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 agctgttcccgggctgacgg 272 |||||||||||||||||||| Sbjct: 834 agctgttcccgggctgacgg 815
>emb|BX815229.1|CNS0AAT3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS44ZD02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2626 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ttgatctacttcatgctcaa 165 |||||||||||||||||||| Sbjct: 1809 ttgatctacttcatgctcaa 1828
>gb|AC016903.3| Homo sapiens BAC clone RP11-259I20 from 2, complete sequence Length = 172512 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ggccatctttctagctgttc 260 |||||||||||||||||||| Sbjct: 47621 ggccatctttctagctgttc 47602
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 98412 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ttgatctacttcatgctcaa 165 |||||||||||||||||||| Sbjct: 75054 ttgatctacttcatgctcaa 75035
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gtgaaggttcagttattgat 150 |||||||||||||||||||| Sbjct: 39703 gtgaaggttcagttattgat 39722
>gb|AE003546.4| Drosophila melanogaster chromosome 3L, section 39 of 83 of the complete sequence Length = 281589 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cagcaacatcgattgctgca 106 |||||||||||||||||||| Sbjct: 48172 cagcaacatcgattgctgca 48153
>gb|AC110551.9| Mus musculus chromosome 7, clone RP23-245P16, complete sequence Length = 155691 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ctcacagaggcaaaggagaggcgg 28 |||| ||||||||||||||||||| Sbjct: 29070 ctcagagaggcaaaggagaggcgg 29093
>gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, complete sequence Length = 248761 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 cagaggcaaaggagaggcggaatg 32 ||||||||||||||||| |||||| Sbjct: 198965 cagaggcaaaggagagggggaatg 198942
>gb|AC153998.2| Mus musculus 6 BAC RP24-278I6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166019 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 cagaggcaaaggagaggcggaatg 32 ||||||||||||||||| |||||| Sbjct: 135709 cagaggcaaaggagagggggaatg 135732
>dbj|AP006099.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT03D07, TM0180a, complete sequence Length = 76444 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 atcaccaacctgtttcagga 324 |||||||||||||||||||| Sbjct: 24458 atcaccaacctgtttcagga 24477
>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete sequence Length = 199774 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctcacagaggcaaaggagag 24 |||||||||||||||||||| Sbjct: 78513 ctcacagaggcaaaggagag 78494
>dbj|AB076713.1| Metasequoia glyptostroboides gapC gene for glyceraldehyde-3-phosphate dehydrogenase, partial cds Length = 2108 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tcaagtttgcaatggagatt 181 |||||||||||||||||||| Sbjct: 508 tcaagtttgcaatggagatt 527 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,412,557 Number of Sequences: 3902068 Number of extensions: 3412557 Number of successful extensions: 58981 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58820 Number of HSP's gapped (non-prelim): 153 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)