ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59b07 |
|---|---|
| Clone Library Name | barley_pub |
>UL56_HHV11 (P10240) Protein UL56| Length = 197 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = +3 Query: 111 PTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIEASATFTVME 290 PT +G + G + + A +A RR + A A R FG G + + T V Sbjct: 64 PTSSGEGEASERGRSRQAAQRAARR-ARRRAERRAQRRSFGPGGLLATPLFLPETRLVAP 122 Query: 291 PDTMRRLFTG 320 PD R L +G Sbjct: 123 PDITRDLLSG 132
>FTHS_STAAW (Q8NW37) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 248 GFG D G+ + +KAR DPAA + A HGGV Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340
>FTHS_STAAS (Q6G8J5) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 248 GFG D G+ + +KAR DPAA + A HGGV Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340
>FTHS_STAAR (Q6GFX6) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 248 GFG D G+ + +KAR DPAA + A HGGV Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340
>SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SGI) [Contains:| Alpha-inhibin-92; Alpha-inhibin-31; Seminal basic protein] Length = 462 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/83 (22%), Positives = 36/83 (43%) Frame = +3 Query: 102 LKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIEASATFT 281 ++ P P+ + + +N E ++ RE D + RH+ G HGG+++ I Sbjct: 388 IQAPNPKQEPWHGENAKGESG--QSTNREQDLLSHEQKGRHQHGSHGGLDIVI------- 438 Query: 282 VMEPDTMRRLFTGELGPERGDLY 350 + + D R L +R L+ Sbjct: 439 IEQEDDSDRHLAQHLNNDRNPLF 461
>LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 368 Score = 29.3 bits (64), Expect = 2.3 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = +3 Query: 51 PTVPMAHVLAAAEPLTLLKRPTP-----QNDGFGDDNGSTEEKALKARRRESDPAAALAA 215 P V + H+LA + +L+RP ++ FGD ++E A+ P+A+L A Sbjct: 218 PDVEVEHLLADNAAMQILRRPGDFDVMLASNLFGDF--LSDEAAMLTGSIGLLPSASLGA 275 Query: 216 ARHEFGEHGGVNMSIEASA 272 AR+ FG G I SA Sbjct: 276 ARNRFGLPKGFYEPIHGSA 294
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 28.9 bits (63), Expect = 3.0 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +3 Query: 111 PTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARHEFG-EHGGVNMSIEASATFTVM 287 P ++G DD + + A A R S+P + EF +HG V ++ S T T Sbjct: 445 PGAPSNGHADDLPAVQSAAAHANGRPSNPVTVRSDELGEFVLDHGAVVIAAVTSCTNT-S 503 Query: 288 EPDTMRRLFTGELGPERGDLYIYSRHFNPTVLALGRQM 401 P+ M L L +R + + S+ + T +A G Q+ Sbjct: 504 NPEVM--LGAALLARQRVEKGLASKPWVKTTMAPGSQV 539
>RS16_RHILO (Q98E70) 30S ribosomal protein S16| Length = 133 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +3 Query: 33 KHPVIRPTVPMAHVLAAAEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALA 212 KH + P VL + L KR N + +E+A ++ + D AAA+A Sbjct: 59 KHWLSHGAQPTDRVLRFLDEAGLAKRDARSNPKKAEPGKKAQERAALLKKAQEDAAAAVA 118 Query: 213 AA 218 AA Sbjct: 119 AA 120
>MEGL_PSEPU (P13254) Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase)| Length = 398 Score = 28.5 bits (62), Expect = 4.0 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = +3 Query: 195 PAAALAAARHEFG--EHGGVNMS-IEASATFTVMEPDTMRRLFTGELGPERGDLYIYSRH 365 P A A H + +HGG + + +ATFT + F GE + YSR Sbjct: 8 PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAG-----HFYSRI 62 Query: 366 FNPTVLALGRQMAAL 410 NPT+ L +MA+L Sbjct: 63 SNPTLNLLEARMASL 77
>FTHS_STAES (Q8CNV9) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 248 GFG D G+ + +KAR DP+A + A HGGV Sbjct: 300 GFGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGV 340
>FTHS_STAEQ (Q5HNH4) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 248 GFG D G+ + +KAR DP+A + A HGGV Sbjct: 300 GFGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGV 340
>RS16_RHIME (Q92L43) 30S ribosomal protein S16| Length = 124 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/65 (24%), Positives = 29/65 (44%) Frame = +3 Query: 33 KHPVIRPTVPMAHVLAAAEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALA 212 +H + + P V+ + L KRP N +E+A +A+++ + AAA + Sbjct: 60 QHWIAQGAQPTDRVMRFLDQAGLAKRPARNNPTKAQPGKKAQERAAEAKQKAEEAAAAAS 119 Query: 213 AARHE 227 A E Sbjct: 120 EAAAE 124
>FTHS_STAAC (Q5HF42) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 248 GFG D G+ + +K R DPAA + A HGGV Sbjct: 300 GFGSDLGAEKFMDIKVREAGFDPAAVVVVATIRALKMHGGV 340
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = +3 Query: 144 NGSTEEKALKARRRESDPAAALAAARHEFGEHGG 245 NGS + L A ES PA A A E EH G Sbjct: 416 NGSNFSEGLSASPFESGPAVGAAGAAAEAAEHSG 449
>EI2BE_HUMAN (Q13144) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 120 QNDG-FGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIE 263 ++DG F DD+G+ +EK K + + +PA AA + + G+NM E Sbjct: 460 EDDGEFSDDSGADQEKD-KVKMKGYNPAEVGAAGKGYLWKAAGMNMEEE 507
>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3433 Score = 27.7 bits (60), Expect = 6.8 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Frame = +3 Query: 21 RLCQKHPVIRPTVPMAHVLAAAEP-----LTLLKRPTPQNDGFGDDNGSTEEKALKARRR 185 RL +P + + A VL EP ++ R Q + +GS+ KA A + Sbjct: 644 RLVTVNPFVSVSTANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKSGSSIGKAFTATLK 703 Query: 186 ESDPAAALAAARHEFGEHGGVNMSI 260 + AAL +FG GGV S+ Sbjct: 704 GAQRLAALGDTAWDFGSVGGVFTSV 728
>VGP_EBORE (Q66799) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 677 Score = 27.3 bits (59), Expect = 8.8 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Frame = +3 Query: 84 AEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARH-EFGEHGGVNMSI 260 A P+T P+P D+N +E+ A +S P+A+ H E G N S Sbjct: 379 ANPMTTTIAPSPTMTSEVDNNVPSEQPNNTASIEDSPPSASNETIYHSEMDPIQGSNNSA 438 Query: 261 EASATFTVMEPDT 299 ++ T T P T Sbjct: 439 QSPQTKTTPAPTT 451
>OPRJ_PSEAE (Q51397) Outer membrane protein oprJ precursor| Length = 479 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +3 Query: 156 EEKALKARRRESDPAAALAAARHEFG 233 EEKAL+A S+ A LA AR+E G Sbjct: 397 EEKALRALANSSNEALKLAKARYESG 422
>ODPA_RAT (P26284) Pyruvate dehydrogenase E1 component alpha subunit, somatic| form, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A type I) Length = 390 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 Query: 257 GHVHAAVLAELVTRRGQCRRRVG 189 GH AVLAEL RRG C + G Sbjct: 128 GHAVRAVLAELTGRRGGCAKGKG 150
>NCPR_SALTR (P19618) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) (Fragments) Length = 601 Score = 27.3 bits (59), Expect = 8.8 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Frame = +3 Query: 129 GFGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIEASAT--FTVMEPD-- 296 G GDD+G+ EE + R + PA EH GV S E S+ + + E + Sbjct: 149 GMGDDDGNLEEDFV-TWREQFWPAMC---------EHFGVEASGEDSSVRQYELKEHNDI 198 Query: 297 TMRRLFTGELG 329 M +++TGELG Sbjct: 199 NMNKVYTGELG 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,803,090 Number of Sequences: 219361 Number of extensions: 609627 Number of successful extensions: 2326 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2275 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2320 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
