ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast59b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470487.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 2e-14
3gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 88 2e-14
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5dbj|AK100733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6dbj|AK061073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 66 9e-08
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
9dbj|AK068009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
10gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete ... 42 1.3
11ref|XM_470485.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
12gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA inc... 42 1.3
13emb|AJ863570.1| IncP-1beta multiresistance plasmid pB8 42 1.3
14gb|AC117186.3| Mus musculus BAC clone RP23-37O6 from 1, complete... 42 1.3
15emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on ... 42 1.3
16gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete seq... 42 1.3
17gb|U66917.2| Pseudomonas sp. ADP atrazine catabolic plasmid pADP... 42 1.3
18emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.3
19emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 42 1.3
20emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 42 1.3
21emb|AJ639924.1| Plasmid pB3 complete genome 42 1.3
22emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multire... 42 1.3
23gb|U67194.4|EAU67194 Enterobacter aerogenes plasmid R751, comple... 42 1.3
24gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 1.3
25dbj|AB063332.1| Delftia acidovorans plasmid pUO1 DNA, complete s... 42 1.3
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
29dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
30dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
31dbj|AK072880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
32gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, comple... 42 1.3
33emb|AM048832.1| Uncultured bacterium mercury resistance plasmid ... 42 1.3
34gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, com... 42 1.3
35gb|AY312363.1| Gallus gallus cHz-cadherin mRNA, complete cds 40 5.2
36gb|AC073138.3| Homo sapiens BAC clone RP11-708P17 from 7, comple... 40 5.2
37ref|XM_755485.1| Ustilago maydis 521 hypothetical protein (UM044... 40 5.2
38gb|AC002990.1|HUAC002990 Human Chromosome 16 BAC clone CIT987SK-... 40 5.2
39gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.2
40gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.2
41emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.2
42ref|NM_001001754.1| Gallus gallus cHz-cadherin (LOC414835), mRNA 40 5.2
43emb|CR594740.1| full-length cDNA clone CS0DI004YL21 of Placenta ... 40 5.2
44dbj|AB224689.1| Aspergillus oryzae cDNA, contig sequence: AoEST1538 40 5.2
45gb|AC027004.15| Homo sapiens chromosome 15, clone RP11-143C19, c... 40 5.2
46dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 5.2
47dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.2
48gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, comp... 40 5.2
49gb|U86915.1|MCU86915 Molluscum contagiosum virus subtype 1 clone... 40 5.2
50gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.2
51gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, comple... 40 5.2
52gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, comp... 40 5.2
53gb|AE004655.1| Pseudomonas aeruginosa PAO1, section 216 of 529 o... 40 5.2
54gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.2
55dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.2
56emb|AJ000552.1|CPVP1HOM Craterostigma plantagineum mRNA for VP1 ... 40 5.2
57ref|XM_311129.2| Anopheles gambiae str. PEST ENSANGP00000004749 ... 40 5.2
58ref|NM_210119.1| Eremothecium gossypii AEL096Wp (AEL096W), mRNA 40 5.2
59emb|BX548070.5| Zebrafish DNA sequence from clone CH211-245P7 in... 40 5.2
60gb|AY105485.1| Zea mays PCO065024 mRNA sequence 40 5.2
61emb|BX927093.8| Zebrafish DNA sequence from clone DKEY-53P2 in l... 40 5.2
62dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.2
63dbj|AB004838.1| Molluscum contagiosum virus DNA for 34-kDa prote... 40 5.2
64dbj|AB070947.1| Streptomyces avermitilis polyketide-9 biosynthet... 40 5.2 
>ref|XM_470487.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 801

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 165/203 (81%), Gaps = 3/203 (1%)
 Strand = Plus / Plus

                                                                       
Query: 181 gggcagtccaacatgggcggccgtggcggcgccacgtccgggaaccgctgggacggcgtg 240
           |||||||||||||||||||| || |||||||||||   ||||  ||| ||||||||||||
Sbjct: 109 gggcagtccaacatgggcggtcgcggcggcgccaccaacggg--ccg-tgggacggcgtg 165

                                                                       
Query: 241 gtgccgccggagtgcgcgccgtccccgcgcacgctgcgcctgtccccgtccctccgctgg 300
           ||||||||||||||||| ||||| || ||||  || ||  |||||||    ||||| |||
Sbjct: 166 gtgccgccggagtgcgccccgtcacctcgcatcctccggttgtcccctgagctccggtgg 225

                                                                       
Query: 301 gaggaggcccgcgagccgctgcacgccggcgtggacgcgggcaacgtggtgggcgtgggc 360
           ||||| || || ||||| || ||||||||| | ||||    ||||||| | |||||||||
Sbjct: 226 gaggaagcgcgggagcccctccacgccggcatcgacgtccacaacgtgctcggcgtgggc 285

                                  
Query: 361 cccgggatgccgttcgcgcacgc 383
           || |||||| | ||||| |||||
Sbjct: 286 ccggggatgtccttcgcccacgc 308
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 165/203 (81%), Gaps = 3/203 (1%)
 Strand = Plus / Plus

                                                                            
Query: 181      gggcagtccaacatgggcggccgtggcggcgccacgtccgggaaccgctgggacggcgtg 240
                |||||||||||||||||||| || |||||||||||   ||||  ||| ||||||||||||
Sbjct: 35885631 gggcagtccaacatgggcggtcgcggcggcgccaccaacggg--ccg-tgggacggcgtg 35885687

                                                                            
Query: 241      gtgccgccggagtgcgcgccgtccccgcgcacgctgcgcctgtccccgtccctccgctgg 300
                ||||||||||||||||| ||||| || ||||  || ||  |||||||    ||||| |||
Sbjct: 35885688 gtgccgccggagtgcgccccgtcacctcgcatcctccggttgtcccctgagctccggtgg 35885747

                                                                            
Query: 301      gaggaggcccgcgagccgctgcacgccggcgtggacgcgggcaacgtggtgggcgtgggc 360
                ||||| || || ||||| || ||||||||| | ||||    ||||||| | |||||||||
Sbjct: 35885748 gaggaagcgcgggagcccctccacgccggcatcgacgtccacaacgtgctcggcgtgggc 35885807

                                       
Query: 361      cccgggatgccgttcgcgcacgc 383
                || |||||| | ||||| |||||
Sbjct: 35885808 ccggggatgtccttcgcccacgc 35885830



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 164      tggtgttcatcctggcggggcagtccaacatgg 196
                |||||||||||||||  |||||||| |||||||
Sbjct: 35882391 tggtgttcatcctgggagggcagtcgaacatgg 35882359



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 292      ctccgctgggaggaggcccgcgagccgct 320
                ||||| ||||||||||||| |||||||||
Sbjct: 35882266 ctccgatgggaggaggcccacgagccgct 35882238
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 165/203 (81%), Gaps = 3/203 (1%)
 Strand = Plus / Minus

                                                                         
Query: 181   gggcagtccaacatgggcggccgtggcggcgccacgtccgggaaccgctgggacggcgtg 240
             |||||||||||||||||||| || |||||||||||   ||||  ||| ||||||||||||
Sbjct: 75494 gggcagtccaacatgggcggtcgcggcggcgccaccaacggg--ccg-tgggacggcgtg 75438

                                                                         
Query: 241   gtgccgccggagtgcgcgccgtccccgcgcacgctgcgcctgtccccgtccctccgctgg 300
             ||||||||||||||||| ||||| || ||||  || ||  |||||||    ||||| |||
Sbjct: 75437 gtgccgccggagtgcgccccgtcacctcgcatcctccggttgtcccctgagctccggtgg 75378

                                                                         
Query: 301   gaggaggcccgcgagccgctgcacgccggcgtggacgcgggcaacgtggtgggcgtgggc 360
             ||||| || || ||||| || ||||||||| | ||||    ||||||| | |||||||||
Sbjct: 75377 gaggaagcgcgggagcccctccacgccggcatcgacgtccacaacgtgctcggcgtgggc 75318

                                    
Query: 361   cccgggatgccgttcgcgcacgc 383
             || |||||| | ||||| |||||
Sbjct: 75317 ccggggatgtccttcgcccacgc 75295



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 292   ctccgctgggaggaggcccgcgagccgct 320
             ||||| ||||||||||||| |||||||||
Sbjct: 78859 ctccgatgggaggaggcccacgagccgct 78887



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 164   tggtgttcatcctggcggggcagtccaacatgg 196
             |||||||||||||||  |||||||| |||||||
Sbjct: 78734 tggtgttcatcctgggagggcagtcgaacatgg 78766
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 165/203 (81%), Gaps = 3/203 (1%)
 Strand = Plus / Plus

                                                                            
Query: 181      gggcagtccaacatgggcggccgtggcggcgccacgtccgggaaccgctgggacggcgtg 240
                |||||||||||||||||||| || |||||||||||   ||||  ||| ||||||||||||
Sbjct: 35975761 gggcagtccaacatgggcggtcgcggcggcgccaccaacggg--ccg-tgggacggcgtg 35975817

                                                                            
Query: 241      gtgccgccggagtgcgcgccgtccccgcgcacgctgcgcctgtccccgtccctccgctgg 300
                ||||||||||||||||| ||||| || ||||  || ||  |||||||    ||||| |||
Sbjct: 35975818 gtgccgccggagtgcgccccgtcacctcgcatcctccggttgtcccctgagctccggtgg 35975877

                                                                            
Query: 301      gaggaggcccgcgagccgctgcacgccggcgtggacgcgggcaacgtggtgggcgtgggc 360
                ||||| || || ||||| || ||||||||| | ||||    ||||||| | |||||||||
Sbjct: 35975878 gaggaagcgcgggagcccctccacgccggcatcgacgtccacaacgtgctcggcgtgggc 35975937

                                       
Query: 361      cccgggatgccgttcgcgcacgc 383
                || |||||| | ||||| |||||
Sbjct: 35975938 ccggggatgtccttcgcccacgc 35975960



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 164      tggtgttcatcctggcggggcagtccaacatgg 196
                |||||||||||||||  |||||||| |||||||
Sbjct: 35972521 tggtgttcatcctgggagggcagtcgaacatgg 35972489



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 292      ctccgctgggaggaggcccgcgagccgct 320
                ||||| ||||||||||||| |||||||||
Sbjct: 35972396 ctccgatgggaggaggcccacgagccgct 35972368
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>dbj|AK100733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117O12, full
           insert sequence
          Length = 1119

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 165/203 (81%), Gaps = 3/203 (1%)
 Strand = Plus / Plus

                                                                       
Query: 181 gggcagtccaacatgggcggccgtggcggcgccacgtccgggaaccgctgggacggcgtg 240
           |||||||||||||||||||| || |||||||||||   ||||  ||| ||||||||||||
Sbjct: 258 gggcagtccaacatgggcggtcgcggcggcgccaccaacggg--ccg-tgggacggcgtg 314

                                                                       
Query: 241 gtgccgccggagtgcgcgccgtccccgcgcacgctgcgcctgtccccgtccctccgctgg 300
           ||||||||||||||||| ||||| || ||||  || ||  |||||||    ||||| |||
Sbjct: 315 gtgccgccggagtgcgccccgtcacctcgcatcctccggttgtcccctgagctccggtgg 374

                                                                       
Query: 301 gaggaggcccgcgagccgctgcacgccggcgtggacgcgggcaacgtggtgggcgtgggc 360
           ||||| || || ||||| || ||||||||| | ||||    ||||||| | |||||||||
Sbjct: 375 gaggaagcgcgggagcccctccacgccggcatcgacgtccacaacgtgctcggcgtgggc 434

                                  
Query: 361 cccgggatgccgttcgcgcacgc 383
           || |||||| | ||||| |||||
Sbjct: 435 ccggggatgtccttcgcccacgc 457
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>dbj|AK061073.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D05, full
           insert sequence
          Length = 1106

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 165/203 (81%), Gaps = 3/203 (1%)
 Strand = Plus / Plus

                                                                       
Query: 181 gggcagtccaacatgggcggccgtggcggcgccacgtccgggaaccgctgggacggcgtg 240
           |||||||||||||||||||| || |||||||||||   ||||  ||| ||||||||||||
Sbjct: 259 gggcagtccaacatgggcggtcgcggcggcgccaccaacggg--ccg-tgggacggcgtg 315

                                                                       
Query: 241 gtgccgccggagtgcgcgccgtccccgcgcacgctgcgcctgtccccgtccctccgctgg 300
           ||||||||||||||||| ||||| || ||||  || ||  |||||||    ||||| |||
Sbjct: 316 gtgccgccggagtgcgccccgtcacctcgcatcctccggttgtcccctgagctccggtgg 375

                                                                       
Query: 301 gaggaggcccgcgagccgctgcacgccggcgtggacgcgggcaacgtggtgggcgtgggc 360
           ||||| || || ||||| || ||||||||| | ||||    ||||||| | |||||||||
Sbjct: 376 gaggaagcgcgggagcccctccacgccggcatcgacgtccacaacgtgctcggcgtgggc 435

                                  
Query: 361 cccgggatgccgttcgcgcacgc 383
           || |||||| | ||||| |||||
Sbjct: 436 ccggggatgtccttcgcccacgc 458
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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
             complete sequence
          Length = 185021

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 226   cgctgggacggcgtggtgccgccggagtgcgcgccgt 262
             |||||||||||||| ||||||||||||||||||||||
Sbjct: 59849 cgctgggacggcgtcgtgccgccggagtgcgcgccgt 59813
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 226      cgctgggacggcgtggtgccgccggagtgcgcgccgt 262
                |||||||||||||| ||||||||||||||||||||||
Sbjct: 11738393 cgctgggacggcgtcgtgccgccggagtgcgcgccgt 11738357



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 75       gccagcggcggcgacgacca 94
                ||||||||||||||||||||
Sbjct: 20199077 gccagcggcggcgacgacca 20199058
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>dbj|AK068009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H13, full
           insert sequence
          Length = 1112

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 226 cgctgggacggcgtggtgccgccggagtgcgcgccgt 262
           |||||||||||||| ||||||||||||||||||||||
Sbjct: 115 cgctgggacggcgtcgtgccgccggagtgcgcgccgt 151
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>gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete sequence
          Length = 87688

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 67743 tgcttctgctgctcgcgtcgg 67763
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>ref|XM_470485.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 903

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 292 ctccgctgggaggaggcccgcgagccgct 320
           ||||| ||||||||||||| |||||||||
Sbjct: 202 ctccgatgggaggaggcccacgagccgct 230



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 164 tggtgttcatcctggcggggcagtccaacatgg 196
           |||||||||||||||  |||||||| |||||||
Sbjct: 77  tggtgttcatcctgggagggcagtcgaacatgg 109
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>gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA incP1beta region, partial sequence
             and transposon Tntsa, complete sequence
          Length = 38756

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 12400 tgcttctgctgctcgcgtcgg 12420
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>emb|AJ863570.1| IncP-1beta multiresistance plasmid pB8
          Length = 57198

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 21134 tgcttctgctgctcgcgtcgg 21154
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>gb|AC117186.3| Mus musculus BAC clone RP23-37O6 from 1, complete sequence
          Length = 172780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   tgtccccgtccctccgctggg 301
             |||||||||||||||||||||
Sbjct: 64177 tgtccccgtccctccgctggg 64157
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>emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on chromosome Xq25 Contains the
              3' end of the HS6ST2 gene for heparan sulfate
              6-O-sulfotransferase 2, a novel gene and the 3' end of a
              novel gene, complete sequence
          Length = 184975

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 17     cctccaccaagtgagcagagcacctagct 45
              |||||||||  ||||||||||||||||||
Sbjct: 180472 cctccaccagctgagcagagcacctagct 180500
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>gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete sequence
          Length = 87688

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 67743 tgcttctgctgctcgcgtcgg 67763
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>gb|U66917.2| Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete
             sequence
          Length = 108845

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 78711 tgcttctgctgctcgcgtcgg 78691
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>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 314   agccgctgcacgccggcgtggacgcgggcaacg 346
             ||||||||||||||||| ||| |||| ||||||
Sbjct: 92859 agccgctgcacgccggcctggccgcgcgcaacg 92891
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>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 314   agccgctgcacgccggcgtggacgcgggcaacg 346
             ||||||||||||||||| ||| |||| ||||||
Sbjct: 12114 agccgctgcacgccggcctggccgcgcgcaacg 12146
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 314    agccgctgcacgccggcgtggacgcgggcaacg 346
              ||||||||||||||||| ||| |||| ||||||
Sbjct: 259964 agccgctgcacgccggcctggccgcgcgcaacg 259996
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>emb|AJ639924.1| Plasmid pB3 complete genome
          Length = 56167

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 13385 tgcttctgctgctcgcgtcgg 13405
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>emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multiresistance plasmid pB10
          Length = 64508

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 10269 tgcttctgctgctcgcgtcgg 10289
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>gb|U67194.4|EAU67194 Enterobacter aerogenes plasmid R751, complete sequence
          Length = 53423

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 27119 tgcttctgctgctcgcgtcgg 27139
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 264     cccgcgcacgctgcgcctgtc 284
               |||||||||||||||||||||
Sbjct: 4161316 cccgcgcacgctgcgcctgtc 4161336



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 112    gcgtcggccgtggccgtgagcgcg 135
              ||||||||||||||||| ||||||
Sbjct: 469709 gcgtcggccgtggccgtcagcgcg 469732
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>dbj|AB063332.1| Delftia acidovorans plasmid pUO1 DNA, complete sequence
          Length = 67066

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 28824 tgcttctgctgctcgcgtcgg 28844
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 164      tggtgttcatcctggcggggcagtccaacatgg 196
                |||||||||||||||  |||||||| |||||||
Sbjct: 30584285 tggtgttcatcctgggcgggcagtcgaacatgg 30584317
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 193      atgggcggccgtggcggcgcc 213
                |||||||||||||||||||||
Sbjct: 14089349 atgggcggccgtggcggcgcc 14089369
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 90      gaccatcctgcttctgctgct 110
               |||||||||||||||||||||
Sbjct: 1316932 gaccatcctgcttctgctgct 1316912



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 304     gaggcccgcgagccgctgca 323
               ||||||||||||||||||||
Sbjct: 2915542 gaggcccgcgagccgctgca 2915561
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>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0069C14
          Length = 150579

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 164   tggtgttcatcctggcggggcagtccaacatgg 196
             |||||||||||||||  |||||||| |||||||
Sbjct: 82848 tggtgttcatcctgggcgggcagtcgaacatgg 82880
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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1102E12
          Length = 155692

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   atgggcggccgtggcggcgcc 213
             |||||||||||||||||||||
Sbjct: 29063 atgggcggccgtggcggcgcc 29083
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>dbj|AK072880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146D23, full
           insert sequence
          Length = 898

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 292 ctccgctgggaggaggcccgcgagccgct 320
           ||||| ||||||||||||| |||||||||
Sbjct: 183 ctccgatgggaggaggcccacgagccgct 211



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 164 tggtgttcatcctggcggggcagtccaacatgg 196
           |||||||||||||||  |||||||| |||||||
Sbjct: 58  tggtgttcatcctgggagggcagtcgaacatgg 90
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>gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, complete sequence
          Length = 194229

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    tgtccccgtccctccgctggg 301
              |||||||||||||||||||||
Sbjct: 134343 tgtccccgtccctccgctggg 134323
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>emb|AM048832.1| Uncultured bacterium mercury resistance plasmid pTP6
          Length = 54344

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 22430 tgcttctgctgctcgcgtcgg 22450
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>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence
          Length = 99448

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tgcttctgctgctcgcgtcgg 118
             |||||||||||||||||||||
Sbjct: 19267 tgcttctgctgctcgcgtcgg 19287
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>gb|AY312363.1| Gallus gallus cHz-cadherin mRNA, complete cds
          Length = 8460

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 gtgcgcgccgtccccgcgca 271
           ||||||||||||||||||||
Sbjct: 204 gtgcgcgccgtccccgcgca 185
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>gb|AC073138.3| Homo sapiens BAC clone RP11-708P17 from 7, complete sequence
          Length = 118396

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   cacgctgcgcctgtccccgt 289
             ||||||||||||||||||||
Sbjct: 36902 cacgctgcgcctgtccccgt 36883
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>ref|XM_755485.1| Ustilago maydis 521 hypothetical protein (UM04431.1) partial mRNA
          Length = 5223

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  tggagccagcggcggcgacg 90
           ||||||||||||||||||||
Sbjct: 562 tggagccagcggcggcgacg 543
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>gb|AC002990.1|HUAC002990 Human Chromosome 16 BAC clone CIT987SK-A-1000D7, complete sequence
          Length = 106760

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gtgagcagagcacctagcta 46
             ||||||||||||||||||||
Sbjct: 25134 gtgagcagagcacctagcta 25153
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 112    gcgtcggccgtggccgtgagcgcg 135
              |||||||| |||||||||||||||
Sbjct: 185334 gcgtcggcggtggccgtgagcgcg 185357
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 304     gaggcccgcgagccgctgcacgccggcg 331
               |||||| ||||| |||||||||||||||
Sbjct: 1633964 gaggccggcgaggcgctgcacgccggcg 1633991
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    gggcggccgtggcggcgcca 214
              ||||||||||||||||||||
Sbjct: 126119 gggcggccgtggcggcgcca 126138
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>ref|NM_001001754.1| Gallus gallus cHz-cadherin (LOC414835), mRNA
          Length = 8460

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 gtgcgcgccgtccccgcgca 271
           ||||||||||||||||||||
Sbjct: 204 gtgcgcgccgtccccgcgca 185
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>emb|CR594740.1| full-length cDNA clone CS0DI004YL21 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1783

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 gggggcgcggagagggcgcc 158
           ||||||||||||||||||||
Sbjct: 5   gggggcgcggagagggcgcc 24
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>dbj|AB224689.1| Aspergillus oryzae cDNA, contig sequence: AoEST1538
          Length = 804

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  tcctgcttctgctgctcgcg 114
           ||||||||||||||||||||
Sbjct: 351 tcctgcttctgctgctcgcg 332
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>gb|AC027004.15| Homo sapiens chromosome 15, clone RP11-143C19, complete sequence
          Length = 181804

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    accatcctgcttctgctgct 110
             ||||||||||||||||||||
Sbjct: 89944 accatcctgcttctgctgct 89925
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 95      tcctgcttctgctgctcgcg 114
               ||||||||||||||||||||
Sbjct: 2695481 tcctgcttctgctgctcgcg 2695500
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 339     gggcaacgtggtgggcgtgg 358
               ||||||||||||||||||||
Sbjct: 1687010 gggcaacgtggtgggcgtgg 1686991
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>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome
          Length = 190289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 310    cgcgagccgctgcacgccggcgtg 333
              ||||||||||||||||| ||||||
Sbjct: 100367 cgcgagccgctgcacgcgggcgtg 100344
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>gb|U86915.1|MCU86915 Molluscum contagiosum virus subtype 1 clone B2-24b homolog of
           vaccinia H3L (B2-24b) gene, partial cds
          Length = 519

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 310 cgcgagccgctgcacgccggcgtg 333
           ||||||||||||||||| ||||||
Sbjct: 510 cgcgagccgctgcacgcgggcgtg 487
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    gggcggccgtggcggcgcca 214
              ||||||||||||||||||||
Sbjct: 444641 gggcggccgtggcggcgcca 444660
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>gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, complete sequence
          Length = 150192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    gggggcgcggagagggcgcc 158
              ||||||||||||||||||||
Sbjct: 109901 gggggcgcggagagggcgcc 109920
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>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence
          Length = 171048

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   gtgagcagagcacctagcta 46
            ||||||||||||||||||||
Sbjct: 5785 gtgagcagagcacctagcta 5766
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>gb|AE004655.1| Pseudomonas aeruginosa PAO1, section 216 of 529 of the complete
            genome
          Length = 10829

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 299  gggaggaggcccgcgagccgctgc 322
            ||||||||||| ||||||||||||
Sbjct: 2375 gggaggaggccggcgagccgctgc 2352
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     ggacggcgtggtgccgccgg 250
               ||||||||||||||||||||
Sbjct: 4898234 ggacggcgtggtgccgccgg 4898253



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     cgctggtgttcatcctggcg 180
               ||||||||||||||||||||
Sbjct: 4340652 cgctggtgttcatcctggcg 4340671



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     gcacgccggcgtggacgcgg 340
               ||||||||||||||||||||
Sbjct: 1203492 gcacgccggcgtggacgcgg 1203511
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 240    ggtgccgccggagtgcgcgccgtc 263
              ||||||||||||| ||||||||||
Sbjct: 786846 ggtgccgccggagcgcgcgccgtc 786869
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>emb|AJ000552.1|CPVP1HOM Craterostigma plantagineum mRNA for VP1 protein homologue
          Length = 2067

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  tgggcggccgtggcggcgcc 213
            ||||||||||||||||||||
Sbjct: 1147 tgggcggccgtggcggcgcc 1166
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>ref|XM_311129.2| Anopheles gambiae str. PEST ENSANGP00000004749
           (ENSANGG00000003705), partial mRNA
          Length = 723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 ggcaacgtggtgggcgtggg 359
           ||||||||||||||||||||
Sbjct: 98  ggcaacgtggtgggcgtggg 79
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>ref|NM_210119.1| Eremothecium gossypii AEL096Wp (AEL096W), mRNA
          Length = 639

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gggcggccgtggcggcgcca 214
           ||||||||||||||||||||
Sbjct: 24  gggcggccgtggcggcgcca 43
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>emb|BX548070.5| Zebrafish DNA sequence from clone CH211-245P7 in linkage group 18,
             complete sequence
          Length = 173372

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   tgccgttcgcgcacgcgctg 387
             ||||||||||||||||||||
Sbjct: 85307 tgccgttcgcgcacgcgctg 85326
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>gb|AY105485.1| Zea mays PCO065024 mRNA sequence
          Length = 722

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ggccgtggccgtgagcgcgc 136
           ||||||||||||||||||||
Sbjct: 372 ggccgtggccgtgagcgcgc 391
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>emb|BX927093.8| Zebrafish DNA sequence from clone DKEY-53P2 in linkage group 11,
             complete sequence
          Length = 68923

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   tgccgttcgcgcacgcgctg 387
             ||||||||||||||||||||
Sbjct: 10397 tgccgttcgcgcacgcgctg 10416
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  cccgcgagccgctgcacgcc 327
            ||||||||||||||||||||
Sbjct: 5164 cccgcgagccgctgcacgcc 5183
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>dbj|AB004838.1| Molluscum contagiosum virus DNA for 34-kDa protein, complete cds
          Length = 1482

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 310 cgcgagccgctgcacgccggcgtg 333
           ||||||||||||||||| ||||||
Sbjct: 900 cgcgagccgctgcacgcgggcgtg 877
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>dbj|AB070947.1| Streptomyces avermitilis polyketide-9 biosynthetic gene cluster
          Length = 24268

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gaggcccgcgagccgctgca 323
            ||||||||||||||||||||
Sbjct: 2327 gaggcccgcgagccgctgca 2308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,394,468
Number of Sequences: 3902068
Number of extensions: 2394468
Number of successful extensions: 67612
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65885
Number of HSP's gapped (non-prelim): 1727
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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