| Clone Name | bast59b02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 147 bits (74), Expect = 3e-32 Identities = 185/222 (83%) Strand = Plus / Plus Query: 208 gacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaactgggg 267 ||||||||||||||| ||||||||||||||||||||||| || ||| ||||| ||||| Sbjct: 99 gacggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattgggg 158 Query: 268 cgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgggtgatgttgtcct 327 || | ||| ||||||||| |||| || |||| |||||| |||| |||||||| || Sbjct: 159 agcggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttct 218 Query: 328 tggctatgacaccatcgctgaatacgttaacggatccagttactttggagcgcttgttgg 387 ||| ||||||||||| |||||||| ||||| || | ||||||||||||||| || || Sbjct: 219 tggatatgacaccattgctgaatatgttaattcttctacttactttggagcgctcgtcgg 278 Query: 388 acgagtagccaacagggttgccaaggcgcgcttcgtgctcga 429 ||| ||||||||||| ||||||||||||| ||||||||||| Sbjct: 279 acgggtagccaacagaattgccaaggcgcggttcgtgctcga 320
>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence Length = 1285 Score = 147 bits (74), Expect = 3e-32 Identities = 185/222 (83%) Strand = Plus / Plus Query: 208 gacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaactgggg 267 ||||||||||||||| ||||||||||||||||||||||| || ||| ||||| ||||| Sbjct: 128 gacggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattgggg 187 Query: 268 cgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgggtgatgttgtcct 327 || | ||| ||||||||| |||| || |||| |||||| |||| |||||||| || Sbjct: 188 agcggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttct 247 Query: 328 tggctatgacaccatcgctgaatacgttaacggatccagttactttggagcgcttgttgg 387 ||| ||||||||||| |||||||| ||||| || | ||||||||||||||| || || Sbjct: 248 tggatatgacaccattgctgaatatgttaattcttctacttactttggagcgctcgtcgg 307 Query: 388 acgagtagccaacagggttgccaaggcgcgcttcgtgctcga 429 ||| ||||||||||| ||||||||||||| ||||||||||| Sbjct: 308 acgggtagccaacagaattgccaaggcgcggttcgtgctcga 349
>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence Length = 1329 Score = 147 bits (74), Expect = 3e-32 Identities = 185/222 (83%) Strand = Plus / Plus Query: 208 gacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaactgggg 267 ||||||||||||||| ||||||||||||||||||||||| || ||| ||||| ||||| Sbjct: 152 gacggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattgggg 211 Query: 268 cgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgggtgatgttgtcct 327 || | ||| ||||||||| |||| || |||| |||||| |||| |||||||| || Sbjct: 212 agcggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttct 271 Query: 328 tggctatgacaccatcgctgaatacgttaacggatccagttactttggagcgcttgttgg 387 ||| ||||||||||| |||||||| ||||| || | ||||||||||||||| || || Sbjct: 272 tggatatgacaccattgctgaatatgttaattcttctacttactttggagcgctcgtcgg 331 Query: 388 acgagtagccaacagggttgccaaggcgcgcttcgtgctcga 429 ||| ||||||||||| ||||||||||||| ||||||||||| Sbjct: 332 acgggtagccaacagaattgccaaggcgcggttcgtgctcga 373
>ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 99.6 bits (50), Expect = 7e-18 Identities = 131/158 (82%) Strand = Plus / Plus Query: 202 gaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaa 261 ||||||||||||||||| |||| |||||||||||| || ||||| | ||| | ||||| Sbjct: 84 gaggaagacggtcggcgagtacgtgctcaggaagggggacttctccgtgaagatcaccaa 143 Query: 262 ctggggcgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgggtgatgt 321 |||||| || ||| | | ||| |||||| | || ||||||||||||||||||| |||||| Sbjct: 144 ctggggagcaaccatgatgtcggtcgtcctccctgattccaaagggaatttggctgatgt 203 Query: 322 tgtccttggctatgacaccatcgctgaatacgttaacg 359 ||| |||||| |||||||| ||||| ||||| |||| Sbjct: 204 tgtgcttggcctagacaccattgctgagtacgtgaacg 241
>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence Length = 1373 Score = 93.7 bits (47), Expect = 4e-16 Identities = 131/159 (82%) Strand = Plus / Plus Query: 202 gaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaa 261 |||||||| |||||||| ||||||||||| ||| |||||||| | |||||| ||||| Sbjct: 92 gaggaagatagtcggcgttcacgagctcagggtgggggatttctccgtcaaggtcaccaa 151 Query: 262 ctggggcgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgggtgatgt 321 |||||| || || ||| ||||||| || | || || ||||||||||| ||||| || || Sbjct: 152 ctggggggcgactctcatgtccgtcatcctccccgactccaaagggaacttgggcgacgt 211 Query: 322 tgtccttggctatgacaccatcgctgaatacgttaacgg 360 ||| || ||||| |||||| ||||||||||||| ||||| Sbjct: 212 tgtgctcggctacgacaccgtcgctgaatacgtcaacgg 250
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 93.7 bits (47), Expect = 4e-16 Identities = 122/147 (82%) Strand = Plus / Plus Query: 202 gaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaa 261 ||||||||||||||||| |||| |||||||||||| || ||||| | ||| | ||||| Sbjct: 147 gaggaagacggtcggcgagtacgtgctcaggaagggggacttctccgtgaagatcaccaa 206 Query: 262 ctggggcgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgggtgatgt 321 |||||| || ||| | | ||| |||||| | || ||||||||||||||||||| |||||| Sbjct: 207 ctggggagcaaccatgatgtcggtcgtcctccctgattccaaagggaatttggctgatgt 266 Query: 322 tgtccttggctatgacaccatcgctga 348 ||| |||||| |||||||| ||||| Sbjct: 267 tgtgcttggcctagacaccattgctga 293
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 367 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 426 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 78795 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 78854 Query: 427 cga 429 ||| Sbjct: 78855 cga 78857 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 208 gacggtcggcgtctacgagctcaggaagggagatttctc 246 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 77427 gacggtcggcgtctatgagctcaggaagggagatttctc 77465 Score = 58.0 bits (29), Expect = 2e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 202 gaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaa 261 ||||||||||||||||| |||| |||||||||||| || ||||| | ||| | ||||| Sbjct: 86154 gaggaagacggtcggcgagtacgtgctcaggaagggggacttctccgtgaagatcaccaa 86213 Query: 262 ctggggcgccaccgtcacgtccgtcgtctttccggattccaaagg 306 |||||| || ||| | | ||| |||||| | || ||||||||||| Sbjct: 86214 ctggggagcaaccatgatgtcggtcgtcctccctgattccaaagg 86258 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaata 351 |||||| |||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 77636 agggaaattggacgatgttgttcttggatatgacaccattgctgaata 77683 Score = 46.1 bits (23), Expect = 0.093 Identities = 44/51 (86%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaatacgt 354 ||||||||||| ||||||||| |||||| |||||||| ||||| ||||| Sbjct: 86351 agggaatttggctgatgttgtgcttggcctagacaccattgctgagtacgt 86401
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 367 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 426 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 22870020 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 22870079 Query: 427 cga 429 ||| Sbjct: 22870080 cga 22870082 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 208 gacggtcggcgtctacgagctcaggaagggagatttctc 246 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 22868652 gacggtcggcgtctatgagctcaggaagggagatttctc 22868690 Score = 58.0 bits (29), Expect = 2e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 202 gaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaaggtgaccaa 261 ||||||||||||||||| |||| |||||||||||| || ||||| | ||| | ||||| Sbjct: 22877379 gaggaagacggtcggcgagtacgtgctcaggaagggggacttctccgtgaagatcaccaa 22877438 Query: 262 ctggggcgccaccgtcacgtccgtcgtctttccggattccaaagg 306 |||||| || ||| | | ||| |||||| | || ||||||||||| Sbjct: 22877439 ctggggagcaaccatgatgtcggtcgtcctccctgattccaaagg 22877483 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaata 351 |||||| |||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 22868861 agggaaattggacgatgttgttcttggatatgacaccattgctgaata 22868908 Score = 46.1 bits (23), Expect = 0.093 Identities = 44/51 (86%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaatacgt 354 ||||||||||| ||||||||| |||||| |||||||| ||||| ||||| Sbjct: 22877576 agggaatttggctgatgttgtgcttggcctagacaccattgctgagtacgt 22877626
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 75.8 bits (38), Expect = 1e-10 Identities = 134/166 (80%) Strand = Plus / Plus Query: 195 cggcggggaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaagg 254 ||||||||||||||| ||| || || || ||||| | |||||| |||||||| || || Sbjct: 121 cggcggggaggaagatggttggggtgtatgagctgaagaagggggatttctccatcaggg 180 Query: 255 tgaccaactggggcgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgg 314 | ||||||||||| || || ||| ||| || | |||| || |||||||||||||||| Sbjct: 181 tcaccaactggggagctactatcatgtctgtgattcttcccgactccaaagggaatttgg 240 Query: 315 gtgatgttgtccttggctatgacaccatcgctgaatacgttaacgg 360 |||||| ||||||||||| || || | ||||||||||||||||| Sbjct: 241 ctgatgtagtccttggctacgatacagttgctgaatacgttaacgg 286
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 75.8 bits (38), Expect = 1e-10 Identities = 134/166 (80%) Strand = Plus / Plus Query: 195 cggcggggaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaagg 254 ||||||||||||||| ||| || || || ||||| | |||||| |||||||| || || Sbjct: 121 cggcggggaggaagatggttggggtgtatgagctgaagaagggggatttctccatcaggg 180 Query: 255 tgaccaactggggcgccaccgtcacgtccgtcgtctttccggattccaaagggaatttgg 314 | ||||||||||| || || ||| ||| || | |||| || |||||||||||||||| Sbjct: 181 tcaccaactggggagctactatcatgtctgtgattcttcccgactccaaagggaatttgg 240 Query: 315 gtgatgttgtccttggctatgacaccatcgctgaatacgttaacgg 360 |||||| ||||||||||| || || | ||||||||||||||||| Sbjct: 241 ctgatgtagtccttggctacgatacagttgctgaatacgttaacgg 286
>emb|BX015892.1|CNS08KFC Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA23DD12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 274 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttccttctc 154 |||||||||||||||||||||| ||||| Sbjct: 118 gctgctgctgcttcttcctttctttctc 91
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaatacgtt 355 ||||||||||| |||||| ||||||||||| || || | |||||||||||| Sbjct: 22122293 agggaatttggctgatgtagtccttggctacgatacagttgctgaatacgtt 22122344 Score = 42.1 bits (21), Expect = 1.5 Identities = 60/73 (82%) Strand = Plus / Plus Query: 195 cggcggggaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaagg 254 ||||||||||||||| ||| || || || ||||| | |||||| |||||||| || || Sbjct: 22122001 cggcggggaggaagatggttggggtgtatgagctgaagaagggggatttctccatcaggg 22122060 Query: 255 tgaccaactgggg 267 | ||||||||||| Sbjct: 22122061 tcaccaactgggg 22122073
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaatacgtt 355 ||||||||||| |||||| ||||||||||| || || | |||||||||||| Sbjct: 96192 agggaatttggctgatgtagtccttggctacgatacagttgctgaatacgtt 96243 Score = 42.1 bits (21), Expect = 1.5 Identities = 60/73 (82%) Strand = Plus / Plus Query: 195 cggcggggaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaagg 254 ||||||||||||||| ||| || || || ||||| | |||||| |||||||| || || Sbjct: 95900 cggcggggaggaagatggttggggtgtatgagctgaagaagggggatttctccatcaggg 95959 Query: 255 tgaccaactgggg 267 | ||||||||||| Sbjct: 95960 tcaccaactgggg 95972
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 304 agggaatttgggtgatgttgtccttggctatgacaccatcgctgaatacgtt 355 ||||||||||| |||||| ||||||||||| || || | |||||||||||| Sbjct: 18137 agggaatttggctgatgtagtccttggctacgatacagttgctgaatacgtt 18188 Score = 42.1 bits (21), Expect = 1.5 Identities = 60/73 (82%) Strand = Plus / Plus Query: 195 cggcggggaggaagacggtcggcgtctacgagctcaggaagggagatttctcggccaagg 254 ||||||||||||||| ||| || || || ||||| | |||||| |||||||| || || Sbjct: 17845 cggcggggaggaagatggttggggtgtatgagctgaagaagggggatttctccatcaggg 17904 Query: 255 tgaccaactgggg 267 | ||||||||||| Sbjct: 17905 tcaccaactgggg 17917
>ref|XM_309127.2| Anopheles gambiae str. PEST ENSANGP00000020554 (ENSANGG00000018065), partial mRNA Length = 989 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttccttctc 154 |||||||||||||||||||||| ||||| Sbjct: 112 gctgctgctgcttcttcctttctttctc 85
>gb|AC120570.5| Rattus norvegicus 1 BAC CH230-96N8 (Children's Hospital Oakland Research Institute) complete sequence Length = 227607 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Minus Query: 129 tgctgctgcttcttcctttccttctcg 155 ||||||||||||||| ||||||||||| Sbjct: 99634 tgctgctgcttcttcttttccttctcg 99608
>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 3/10 Length = 348475 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 135 tgcttcttcctttccttctcgc 156 |||||||||||||||||||||| Sbjct: 317625 tgcttcttcctttccttctcgc 317604
>emb|AL121806.2|DMBR42I17 Drosophila melanogaster BAC clone BACR42I17 Length = 155168 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 tgctgctgcttcttcctttccttctc 154 ||||||||||||||||||| |||||| Sbjct: 25792 tgctgctgcttcttccttttcttctc 25817
>gb|AC104410.3| Drosophila melanogaster X BAC RP98-10H22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179869 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 tgctgctgcttcttcctttccttctc 154 ||||||||||||||||||| |||||| Sbjct: 40629 tgctgctgcttcttccttttcttctc 40654
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 135 tgcttcttcctttccttctcgc 156 |||||||||||||||||||||| Sbjct: 1014013 tgcttcttcctttccttctcgc 1013992
>gb|AC009803.17| Homo sapiens 12 BAC RP11-1028N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186044 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 299 tccaaagggaatttgggtgatg 320 |||||||||||||||||||||| Sbjct: 79865 tccaaagggaatttgggtgatg 79844
>ref|XM_315852.2| Anopheles gambiae str. PEST ENSANGP00000017392 (ENSANGG00000014903), partial mRNA Length = 703 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttc 148 |||||||||||||||||||||| Sbjct: 141 gctgctgctgcttcttcctttc 120
>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete sequence Length = 306598 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 tgctgctgcttcttcctttccttctc 154 ||||||||||||||||||| |||||| Sbjct: 288410 tgctgctgcttcttccttttcttctc 288435
>dbj|AP006683.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I02, TM0377b, complete sequence Length = 53203 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 304 agggaatttgggtgatgttgtccttggctatgac 337 |||||| |||||||||||||| ||||| |||||| Sbjct: 13190 agggaagttgggtgatgttgttcttggatatgac 13157
>gb|DQ235451.1| Mantidactylus microtympanum voucher ZSM 158/2002 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 648 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ccagccagtctccccaagcaa 23 ||||||||||||||||||||| Sbjct: 7 ccagccagtctccccaagcaa 27
>gb|BT012938.1| Lycopersicon esculentum clone 114106R, mRNA sequence Length = 1268 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cagagcaccgctgctgctgct 138 ||||||||||||||||||||| Sbjct: 375 cagagcaccgctgctgctgct 355
>gb|AC090204.11| Homo sapiens chromosome 8, clone RP11-11N9, complete sequence Length = 173191 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 aagggaatttgggtgatgttgtcct 327 ||||||||||||||||||| ||||| Sbjct: 49489 aagggaatttgggtgatgtagtcct 49465
>gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, complete sequence Length = 193991 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 303 aagggaatttgggtgatgttgtcct 327 ||||||||||||||||||| ||||| Sbjct: 4324 aagggaatttgggtgatgtagtcct 4348
>ref|NM_168646.1| Drosophila melanogaster Myosin binding subunit CG32156-RC, transcript variant C (Mbs), mRNA Length = 5100 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttcctt 151 ||||||||||||||||| ||||||| Sbjct: 205 gctgctgctgcttcttcttttcctt 181
>gb|AY118409.1| Drosophila melanogaster RE63915 full insert cDNA Length = 5110 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttcctt 151 ||||||||||||||||| ||||||| Sbjct: 202 gctgctgctgcttcttcttttcctt 178
>gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, complete sequence Length = 196119 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 tttgggtgatgttgtccttgg 330 ||||||||||||||||||||| Sbjct: 40302 tttgggtgatgttgtccttgg 40322
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 accgctgctgctgcttcttc 143 |||||||||||||||||||| Sbjct: 917145 accgctgctgctgcttcttc 917126
>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence Length = 185692 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 agcagcaatggccagagcac 125 |||||||||||||||||||| Sbjct: 168852 agcagcaatggccagagcac 168871
>gb|AC170154.2| Phakopsora pachyrhizi clone JGIAFNA-1965K4, complete sequence Length = 38852 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ctgcttcttcctttccttct 153 |||||||||||||||||||| Sbjct: 32553 ctgcttcttcctttccttct 32534
>gb|AC169701.1| Rhesus Macaque BAC CH250-11P19 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 166264 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctt 146 |||||||||||||||||||| Sbjct: 123853 gctgctgctgcttcttcctt 123872
>gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (LANL), complete sequence Length = 43411 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ccccagccagtctccccaag 20 |||||||||||||||||||| Sbjct: 23123 ccccagccagtctccccaag 23142
>gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's Hospital Oakland Research Institute) complete sequence Length = 214961 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttccttctc 154 ||||||||||||||||| | |||||||| Sbjct: 54262 gctgctgctgcttcttcttctccttctc 54235
>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence Length = 191050 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctt 146 |||||||||||||||||||| Sbjct: 473 gctgctgctgcttcttcctt 492
>gb|AC158179.2| Selaginella moellendorffii clone JGIASXY-5A11, complete sequence Length = 40733 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctt 146 |||||||||||||||||||| Sbjct: 34558 gctgctgctgcttcttcctt 34577
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gcggcggggaggaagacggt 213 |||||||||||||||||||| Sbjct: 11657313 gcggcggggaggaagacggt 11657294 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 ccgctgctgctgcttcttcctttc 148 |||||||||||||||||| ||||| Sbjct: 79032 ccgctgctgctgcttctttctttc 79009
>ref|XM_974714.1| PREDICTED: Mus musculus additional sex combs like 1 (Drosophila) (Asxl1), mRNA Length = 6764 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ggccagagcaccgctgctgctgct 138 |||||||| ||||||||||||||| Sbjct: 915 ggccagagaaccgctgctgctgct 892
>ref|XM_001004872.1| PREDICTED: Mus musculus additional sex combs like 1 (Drosophila), transcript variant 1 (Asxl1), mRNA Length = 6761 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ggccagagcaccgctgctgctgct 138 |||||||| ||||||||||||||| Sbjct: 915 ggccagagaaccgctgctgctgct 892
>emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chromosome 16, complete sequence Length = 213704 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctt 146 |||||||||||||||||||| Sbjct: 163925 gctgctgctgcttcttcctt 163944
>gb|AY152830.1| Felis catus clone BAC 463h11 major histocompatiblity complex classical class II region, partial sequence Length = 141214 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctttccttctc 154 ||||||||||||||| ||| |||||||| Sbjct: 68128 gctgctgctgcttctgcctctccttctc 68155
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence Length = 148635 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gcggcggggaggaagacggt 213 |||||||||||||||||||| Sbjct: 46408 gcggcggggaggaagacggt 46389
>gb|AC010066.9| Drosophila melanogaster 3L BAC RPCI98-25O1 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 176056 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttcct 150 ||||||||||||||||| |||||| Sbjct: 36541 gctgctgctgcttcttcttttcct 36518
>gb|AC010060.10| Drosophila melanogaster 3L BAC RP98-22J22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 200985 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 accgctgctgctgcttcttc 143 |||||||||||||||||||| Sbjct: 83724 accgctgctgctgcttcttc 83705
>ref|NM_001039939.1| Mus musculus additional sex combs like 1 (Drosophila) (Asxl1), mRNA Length = 6674 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ggccagagcaccgctgctgctgct 138 |||||||| ||||||||||||||| Sbjct: 828 ggccagagaaccgctgctgctgct 805
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 ccgctgctgctgcttcttcctttc 148 |||||||||||||||||| ||||| Sbjct: 13032 ccgctgctgctgcttctttctttc 13009
>gb|AC093499.2| Drosophila melanogaster 3L BAC RP98-18K24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169209 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttcct 150 ||||||||||||||||| |||||| Sbjct: 148745 gctgctgctgcttcttcttttcct 148722
>ref|NM_031179.1| Mus musculus splicing factor 3b, subunit 1 (Sf3b1), mRNA Length = 6232 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcagcaatggccagagcac 125 |||||||||||||||||||| Sbjct: 2270 agcagcaatggccagagcac 2251
>tpg|BK005683.1| TPA: TPA_exp: Mus musculus additional sex combs-like 1 protein (Asxl1) mRNA, complete cds Length = 6674 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ggccagagcaccgctgctgctgct 138 |||||||| ||||||||||||||| Sbjct: 828 ggccagagaaccgctgctgctgct 805
>ref|NM_168648.1| Drosophila melanogaster Myosin binding subunit CG32156-RB, transcript variant B (Mbs), mRNA Length = 4976 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttcct 150 ||||||||||||||||| |||||| Sbjct: 212 gctgctgctgcttcttcttttcct 189
>gb|AC005912.1| Homo sapiens 12 BAC RPCI11-543P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165516 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tgctgcttcttcctttcctt 151 |||||||||||||||||||| Sbjct: 102510 tgctgcttcttcctttcctt 102491
>gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, complete sequence Length = 179104 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 cctagccagcagcaatggccagag 122 ||||||||||||||||||| |||| Sbjct: 147158 cctagccagcagcaatggcgagag 147181
>gb|AC018711.4| Homo sapiens BAC clone RP11-324K4 from 1, complete sequence Length = 167334 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ctgctgctgcttcttccttt 147 |||||||||||||||||||| Sbjct: 111870 ctgctgctgcttcttccttt 111851
>gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0079B22, from chromosome 3, complete sequence Length = 125217 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 ccgctgctgctgcttcttcctttc 148 |||||||||||||||||| ||||| Sbjct: 46186 ccgctgctgctgcttctttctttc 46209
>dbj|AK140982.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130090E12 product:splicing factor 3b, subunit 1, full insert sequence Length = 2374 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcagcaatggccagagcac 125 |||||||||||||||||||| Sbjct: 2163 agcagcaatggccagagcac 2144
>gb|AC093422.3| Homo sapiens chromosome 1 clone RP11-383G10, complete sequence Length = 180872 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ctgctgctgcttcttccttt 147 |||||||||||||||||||| Sbjct: 76091 ctgctgctgcttcttccttt 76110
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gcggcggggaggaagacggt 213 |||||||||||||||||||| Sbjct: 11654076 gcggcggggaggaagacggt 11654057 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 ccgctgctgctgcttcttcctttc 148 |||||||||||||||||| ||||| Sbjct: 79032 ccgctgctgctgcttctttctttc 79009
>gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, complete sequence Length = 180354 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ccccagccagtctccccaag 20 |||||||||||||||||||| Sbjct: 29135 ccccagccagtctccccaag 29116
>gb|AC008199.4|AC008199 Drosophila melanogaster, chromosome 3R, region 94D-94D, BAC clone BACR01K08, complete sequence Length = 177127 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agccagcagcaatggccaga 121 |||||||||||||||||||| Sbjct: 115131 agccagcagcaatggccaga 115112
>gb|AC105762.4| Homo sapiens BAC clone RP11-689P15 from 2, complete sequence Length = 76326 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctttcct 150 ||||||||||||||||||| |||| Sbjct: 75001 gctgctgctgcttcttcctctcct 75024
>gb|AC119429.3| Homo sapiens chromosome 1 clone RP4-723P6, complete sequence Length = 115940 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gctgctgcttcttcctttcc 149 |||||||||||||||||||| Sbjct: 6114 gctgctgcttcttcctttcc 6133
>ref|XM_343570.2| PREDICTED: Rattus norvegicus splicing factor 3b, subunit 1 (Sf3b1), mRNA Length = 6179 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcagcaatggccagagcac 125 |||||||||||||||||||| Sbjct: 2319 agcagcaatggccagagcac 2300
>gb|AC124758.6| Mus musculus BAC clone RP23-123I10 from chromosome 6, complete sequence Length = 216956 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 48 ttctcctgacctctcttcgtctttctct 75 |||| ||||||||||||| ||||||||| Sbjct: 99826 ttctactgacctctcttcttctttctct 99853
>gb|AC074362.5| Homo sapiens BAC clone RP11-1C10 from 2, complete sequence Length = 149705 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctttcct 150 ||||||||||||||||||| |||| Sbjct: 675 gctgctgctgcttcttcctctcct 698
>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence Length = 171307 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgcttcttcctttccttctc 154 |||||||||||||||||||| Sbjct: 118054 tgcttcttcctttccttctc 118035
>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence Length = 257730 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 agcagcaatggccagagcac 125 |||||||||||||||||||| Sbjct: 122906 agcagcaatggccagagcac 122925
>dbj|AK119851.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-F09, full insert sequence Length = 2863 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tcgcggcgctgtgcgtcgcg 172 |||||||||||||||||||| Sbjct: 64 tcgcggcgctgtgcgtcgcg 83
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agcaccgctgctgctgcttc 140 |||||||||||||||||||| Sbjct: 24580 agcaccgctgctgctgcttc 24561
>gb|AE003741.2| Drosophila melanogaster chromosome 3R, section 79 of 118 of the complete sequence Length = 233356 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agccagcagcaatggccaga 121 |||||||||||||||||||| Sbjct: 143029 agccagcagcaatggccaga 143010
>gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52 of 83 of the complete sequence Length = 289141 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 accgctgctgctgcttcttc 143 |||||||||||||||||||| Sbjct: 208280 accgctgctgctgcttcttc 208261
>gb|AE003528.3| Drosophila melanogaster chromosome 3L, section 57 of 83 of the complete sequence Length = 283815 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gctgctgctgcttcttcctttcct 150 ||||||||||||||||| |||||| Sbjct: 32589 gctgctgctgcttcttcttttcct 32566
>dbj|AK122413.1| Mus musculus mRNA for mKIAA0978 protein Length = 4766 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ggccagagcaccgctgctgctgct 138 |||||||| ||||||||||||||| Sbjct: 828 ggccagagaaccgctgctgctgct 805
>gb|AC170150.2| Phakopsora pachyrhizi clone JGIAFNA-1237E23, complete sequence Length = 35279 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ctgcttcttcctttccttct 153 |||||||||||||||||||| Sbjct: 25404 ctgcttcttcctttccttct 25385
>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ggccagagcaccgctgctgctgct 138 |||||||| ||||||||||||||| Sbjct: 41598 ggccagagaaccgctgctgctgct 41575
>gb|AC156348.3| Colobus guereza clone CH272-110A23, complete sequence Length = 115353 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctt 146 |||||||||||||||||||| Sbjct: 85382 gctgctgctgcttcttcctt 85401
>emb|AL845257.2| Mouse DNA sequence from clone RP23-280K4 on chromosome 2, complete sequence Length = 169281 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gctgctgctgcttcttcctt 146 |||||||||||||||||||| Sbjct: 121122 gctgctgctgcttcttcctt 121141
>dbj|AB037890.1| Mus musculus Sf3b1 mRNA for pre-mRNA splicing factor SF3b 155 kDa subunit, complete cds Length = 6232 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcagcaatggccagagcac 125 |||||||||||||||||||| Sbjct: 2270 agcagcaatggccagagcac 2251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,263,269 Number of Sequences: 3902068 Number of extensions: 4263269 Number of successful extensions: 91102 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90622 Number of HSP's gapped (non-prelim): 474 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)