Clone Information

BLAST Search Result

Clone Name	bast59a10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ZNHI4_MOUSE (Q99PT3) Zinc finger HIT domain-containing protein 4...	32	0.70
2	UVRC_DESVH (Q72DX8) UvrABC system protein C (Protein uvrC) (Exci...	32	0.91
3	VL2_HPV23 (P50797) Minor capsid protein L2	31	1.2
4	ZNHI4_HUMAN (Q9C086) Zinc finger HIT domain-containing protein 4...	31	1.6
5	MGAT3_MOUSE (Q10470) Beta-1,4-mannosyl-glycoprotein 4-beta-N-ace...	31	1.6
6	ABCAC_HUMAN (Q86UK0) ATP-binding cassette sub-family A member 12...	30	2.0
7	PB2_IAWIL (P03427) Polymerase basic protein 2 (RNA-directed RNA ...	30	2.0
8	HUTH_RHILO (Q983I0) Histidine ammonia-lyase (EC 4.3.1.3) (Histid...	30	2.0
9	VGLC_BHV1C (P14378) Glycoprotein GIII precursor	30	2.0
10	PER2_HUMAN (O15055) Period circadian protein 2	30	2.7
11	DEOC_MYCTU (P63929) Deoxyribose-phosphate aldolase (EC 4.1.2.4) ...	30	3.5
12	DEOC_MYCBO (P63930) Deoxyribose-phosphate aldolase (EC 4.1.2.4) ...	30	3.5
13	PB2_IAZTE (P26114) Polymerase basic protein 2 (RNA-directed RNA ...	30	3.5
14	PB2_IAZI1 (P26113) Polymerase basic protein 2 (RNA-directed RNA ...	30	3.5
15	YPRA_ECOLI (P13974) Hypothetical 24.3 kDa protein (URF 1)	30	3.5
16	TRPD_IDILO (Q5QX82) Anthranilate phosphoribosyltransferase (EC 2...	29	4.5
17	PB2_IATKM (P26112) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
18	PB2_IASIN (P26111) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
19	PB2_IASE2 (P26110) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
20	PB2_IARUD (P26109) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
21	PB2_IAPUE (P03428) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
22	PB2_IANT6 (P03429) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
23	PB2_IAMAN (P31344) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
24	PB2_IALE3 (P26126) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
25	PB2_IALE2 (P26125) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
26	PB2_IALE1 (P26124) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
27	PB2_IAKOR (P26108) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
28	PB2_IAKIT (O91740) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
29	PB2_IAKIE (P18884) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
30	PB2_IAHO3 (O56266) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
31	PB2_IAHLO (P26106) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
32	PB2_IAGUA (P26116) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
33	PB2_IAGU2 (P26115) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
34	PB2_IAFPW (P18883) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
35	PB2_IAFPR (P12445) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
36	PB2_IAFOM (Q82573) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
37	PB2_IACHI (P11486) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
38	PB2_IABUD (P26104) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
39	PB2_IAANN (P21428) Polymerase basic protein 2 (RNA-directed RNA ...	29	4.5
40	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	29	4.5
41	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	29	4.5
42	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	29	4.5
43	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	29	4.5
44	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	29	4.5
45	HUNB_DROOR (O62537) Protein hunchback	29	4.5
46	PB2_IAME8 (P26117) Polymerase basic protein 2 (RNA-directed RNA ...	29	5.9
47	PB2_IAHPR (P26107) Polymerase basic protein 2 (RNA-directed RNA ...	29	5.9
48	CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displace...	29	5.9
49	POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocaps...	28	7.7
50	PB2_IAVI7 (P31345) Polymerase basic protein 2 (RNA-directed RNA ...	28	7.7
51	MDTB_SALTI (Q8Z5F7) Multidrug resistance protein mdtB (Multidrug...	28	7.7

>ZNHI4_MOUSE (Q99PT3) Zinc finger HIT domain-containing protein 4|
           (PAP-1-associated protein 1) (PAPA-1) (High mobility
           group AT-hook 1-like 4)
          Length = 345

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
 Frame = -2

Query: 162 TRTETSDGSSGSTAARSPRRNGRAATRRDWSASSFVDG--------PVPLPTPAAISMIP 7
           T+T    G  G  AAR  RR GRAA         +  G        P  +PTP A++  P
Sbjct: 230 TKTAAPSGRGGRGAARGERRGGRAAAPAPAPMVRYCSGAQGSTLSFPPGVPTPTAVAQRP 289

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>UVRC_DESVH (Q72DX8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 702

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +2

Query: 35  GNGTGPSTNDDALQSLLVAARPFLRGDLAAV----DPELPSLVSVLVSAGAGECYHKHGT 202
           G+    +T   A   +L  A   LRG +  +    +P    LV + +S    E   K  T
Sbjct: 389 GDTLAGATGKGATHLMLETALAALRGGIVRIALPRNPAENRLVDMAMSNAREEARRKADT 448

Query: 203 FLAHLLDVYRILRLWGAPDAVARCGLFHSSYSNSYVNLAIFE 328
            L  LL   R L L G P  +    + H+   N+ V + +FE
Sbjct: 449 PLQDLLA--RALHLAGPPHRIEAVDVSHTGGRNTRVGMVVFE 488

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>VL2_HPV23 (P50797) Minor capsid protein L2|
          Length = 519

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 5   TGIIEMAAGVGNGTGPSTNDDALQSLLVAARPFLRGD-LAAVDPELPSLVSVLVSAGAGE 181
           TG + +  GV  G  P+    A+   ++     +  D +A +DPE PS+VS+  S  A +
Sbjct: 67  TGYVPLRPGVRVGGTPTVVRPAVIPEIIGPTELIPVDSIAPIDPEAPSIVSLTDSGAAAD 126

Query: 182 CYHKHGTFLAHL 217
            +      +A +
Sbjct: 127 LFPSEAETIAEV 138

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>ZNHI4_HUMAN (Q9C086) Zinc finger HIT domain-containing protein 4|
           (PAP-1-associated protein 1) (PAPA-1) (High mobility
           group AT-hook 1-like 4)
          Length = 343

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = -2

Query: 162 TRTETSDGSSGSTAARSPRRNGRAATRR------DWSASSFVDGPVPLPTPAAISMIP 7
           T+T  + G  G   AR  RR GRAA           +  S +  P  +P P A+S  P
Sbjct: 230 TKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRP 287

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>MGAT3_MOUSE (Q10470) Beta-1,4-mannosyl-glycoprotein|
           4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           (N-glycosyl-oligosaccharide-glycoprotein
           N-acetylglucosaminyltransferase III)
           (N-acetylglucosaminyltransferase III) (GNT-III)
           (GlcNAc-T III)
          Length = 538

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
 Frame = -2

Query: 180 SPAPADTRTETSDGSSGSTAARSPRRN--------GRAATRRDW 73
           SP   + +TE S+GSS    AR P R+        G   TRR W
Sbjct: 129 SPGRTEEKTEVSEGSSARGPARRPMRHVLSSRERLGSRGTRRKW 172

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>ABCAC_HUMAN (Q86UK0) ATP-binding cassette sub-family A member 12 (ATP-binding|
            cassette transporter 12) (ATP-binding cassette 12)
          Length = 2595

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 236  LRLWGAPDAVARCGLFHSSYSNSYVNLAIFEP-DVSRARVRGIVGEAAERLVHLFCVVPR 412
            LRL      + +  LF   +++S+V   I E  DV   R+R   G A   LV L+C+   
Sbjct: 2203 LRLLINESLIKKLRLFFRKFNSSHVRETIDEDEDVRAERLRVESGAAEFDLVQLYCLTKT 2262

Query: 413  HALMH 427
            + L+H
Sbjct: 2263 YQLIH 2267

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>PB2_IAWIL (P03427) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G + NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEARNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>HUTH_RHILO (Q983I0) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 513

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 110 GDLAAVDPELPSLVSVLVSAGAGECYHKHGTFLAHLLDVYRILR--LWGAPDAVARCGLF 283
           GDLA     L  + +V++  G GEC+  HG F A +  V   L     GA + +A   L 
Sbjct: 144 GDLAP----LSHMTAVMI--GVGECFTPHGRFPAKVAFVSHGLEPVTLGAKEGLAL--LN 195

Query: 284 HSSYSNSYVNLAIFEPDV 337
            + +S +Y   A+FE +V
Sbjct: 196 GTQFSTAYALAALFEAEV 213

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>VGLC_BHV1C (P14378) Glycoprotein GIII precursor|
          Length = 521

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 177 PAPADTRTETSDGSSGSTAARSPRRNGRAATRRDWSASSFVDGPVPLPTPAAIS 16
           P+P  T TE+S G++G+T    P  N   AT  D +  +    PV  P P ++S
Sbjct: 37  PSPCPTETESSAGTTGAT---PPTPNSPDATPEDSTPGATT--PVGTPEPPSVS 85

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>PER2_HUMAN (O15055) Period circadian protein 2|
          Length = 1255

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 147 SDGSSGSTAARSPR--RNGRAATRRDWSASSFVDGPVPLPTPAAISM 13
           S GS G  +AR P    N  A +  D S SS    P P P PAA S+
Sbjct: 810 STGSGGPVSARPPLVGLNATAWSPSDTSQSSCPAVPFPAPVPAAYSL 856

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>DEOC_MYCTU (P63929) Deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 224

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 308 VNLAIFEPDVSRARVRGIVGEAAERLVHLFCVVP 409
           V+  + +P+ +RA V  +V EAAE  V+  CV P
Sbjct: 14  VDHTLLKPETTRADVAALVAEAAELGVYAVCVSP 47

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>DEOC_MYCBO (P63930) Deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 224

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 308 VNLAIFEPDVSRARVRGIVGEAAERLVHLFCVVP 409
           V+  + +P+ +RA V  +V EAAE  V+  CV P
Sbjct: 14  VDHTLLKPETTRADVAALVAEAAELGVYAVCVSP 47

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>PB2_IAZTE (P26114) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARSIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAZI1 (P26113) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARSIVRRATVSADP-LASLLEMCHSTQIG 290

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>YPRA_ECOLI (P13974) Hypothetical 24.3 kDa protein (URF 1)|
          Length = 217

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 155 VLVSAGAGECYHKHGTFLAHLLDVYRILRLWGAP 256
           +L  +G    +  HGT L +LL V+ + R W AP
Sbjct: 34  LLYGSGKNYLFFSHGTVLMYLLCVFLVYRRWIAP 67

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>TRPD_IDILO (Q5QX82) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 337

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
 Frame = +2

Query: 41  GTGPSTNDDALQSLLVAARPFLRGDLAAVD----------PELPSLVSVLVSAGAGECYH 190
           G  P+    A +++L AA+PFLR D   +D              S  + LV+A  G    
Sbjct: 46  GETPAELAGAAEAILSAAKPFLRSDTTVIDSCGTGGDGSNTINISTTAALVAASMGLAVA 105

Query: 191 KHG 199
           KHG
Sbjct: 106 KHG 108

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>PB2_IATKM (P26112) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVKNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IASIN (P26111) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IASE2 (P26110) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IARUD (P26109) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAPUE (P03428) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVKNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IANT6 (P03429) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IAMAN (P31344) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IALE3 (P26126) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IALE2 (P26125) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IALE1 (P26124) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IAKOR (P26108) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IAKIT (O91740) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IAKIE (P18884) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IAHO3 (O56266) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAHLO (P26106) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAGUA (P26116) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAGU2 (P26115) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAFPW (P18883) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IAFPR (P12445) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSADP-LASLLEMCHSTQIG 290

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>PB2_IAFOM (Q82573) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IACHI (P11486) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>PB2_IABUD (P26104) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRATVSTDP-LSSLLEMCHSTQIG 290

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>PB2_IAANN (P21428) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSTQIG 290

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 180 SPAPADTRTETSDGSS-GSTAARSPRRNGRAATRRDWSASSFVDGPVP 40
           S + + + + TS GSS GS+++ +  R+G ++T R  S+SS    P P
Sbjct: 79  SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 180 SPAPADTRTETSDGSS-GSTAARSPRRNGRAATRRDWSASSFVDGPVP 40
           S + + + + TS GSS GS+++ +  R+G ++T R  S+SS    P P
Sbjct: 79  SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 180 SPAPADTRTETSDGSS-GSTAARSPRRNGRAATRRDWSASSFVDGPVP 40
           S + + + + TS GSS GS+++ +  R+G ++T R  S+SS    P P
Sbjct: 79  SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 180 SPAPADTRTETSDGSS-GSTAARSPRRNGRAATRRDWSASSFVDGPVP 40
           S + + + + TS GSS GS+++ +  R+G ++T R  S+SS    P P
Sbjct: 79  SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 180 SPAPADTRTETSDGSS-GSTAARSPRRNGRAATRRDWSASSFVDGPVP 40
           S + + + + TS GSS GS+++ +  R+G ++T R  S+SS    P P
Sbjct: 79  SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

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>HUNB_DROOR (O62537) Protein hunchback|
          Length = 767

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 168 ADTRTETSDGSSGSTAARSPRRNGRAATRRDWSASSFVDGPVPLPTPAAISMIPVC 1
           A+T   ++  SSG+++  S   NG +++    S ++      P  TPAA   I  C
Sbjct: 661 ANTSASSTASSSGNSSNASSNSNGNSSSNSSSSGTNSAAAAPPSGTPAAAGAIYEC 716

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>PB2_IAME8 (P26117) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDVDQSLIIAARNIVRRAAVSADP-LASLLEMCHSQQIG 290

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>PB2_IAHPR (P26107) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDIDQSLIIAARNIVRRATVSTDP-LASLLEMCHSTQIG 290

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>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
           (CDP)
          Length = 1505

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 38  NGTGPSTNDDALQSLLVAARPFLRGDLAAVDPEL 139
           + +G   +DDA++S+L  AR  +    AA+DP L
Sbjct: 695 SASGSGNSDDAIRSILQQARREMEAQQAALDPAL 728

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>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 177 PAPADTRTETSDGSSGSTAARSPRRNGRAATRRDWS 70
           P   D+ T   D    S   R PR N     RRDWS
Sbjct: 40  PRQRDSSTTGDDSGRDSGGPRRPRGNRGRGQRRDWS 75

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>PB2_IAVI7 (P31345) Polymerase basic protein 2 (RNA-directed RNA polymerase|
           subunit P3)
          Length = 759

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 47  GPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAG 178
           G   NDD  QSL++AAR  +R    + DP L SL+ +  S   G
Sbjct: 248 GEVRNDDIDQSLIIAARNIVRRASVSADP-LASLLEMCHSTQIG 290

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>MDTB_SALTI (Q8Z5F7) Multidrug resistance protein mdtB (Multidrug transporter|
            mdtB)
          Length = 1040

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +2

Query: 11   IIEMAAGVGNGTGPSTNDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAGECYH 190
            +I+ A       G S  D   Q+ L+  RP L   LAA+   LP ++S  V A   E   
Sbjct: 938  MIDFALAAEREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGA---ELRR 994

Query: 191  KHGTFLAHLLDVYRILRLWGAP 256
              G  +   L V ++L L+  P
Sbjct: 995  PLGIAMVGGLLVSQVLTLFTTP 1016


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.278   0.0819    0.188 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,566,036
Number of Sequences: 219361
Number of extensions: 592177
Number of successful extensions: 995
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 18 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result