ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast59a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468514.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1435 Score = 371 bits (187), Expect = 1e-99 Identities = 310/351 (88%) Strand = Plus / Plus Query: 95 cggccgttcctccggggcgacctcgcggcggtcgaccccgagctgccgtcgctcgtctcc 154 |||||||||||||| ||||||||| | ||| |||||||||||||| || || || ||| Sbjct: 120 cggccgttcctccgcggcgacctctctcaggtggaccccgagctgccctccctggtgtcc 179 Query: 155 gtcctcgtgtccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccac 214 || ||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 180 gtgctctgcgatgccggcgccggcgagtgctaccacaagcacggcaccttcctcgcccac 239 Query: 215 ctcctcgacgtctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgc 274 ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||| Sbjct: 240 ctcatcgacgtctaccgcatcctccgcctctggggcgcccccgacgccgtggcgcgctgc 299 Query: 275 ggcctcttccactcctcctactccaactcctacgtcaacctcgccatcttcgagcccgac 334 ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 300 ggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttccagcccgac 359 Query: 335 gtcagccgcgcccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctc 394 ||| ||| | || |||||| |||||| |||||| ||||||||||| ||||| |||||| Sbjct: 360 gtcgcccgggaccacgtccggggcatcatcggcgccgccgccgagcgcctcgtccacctc 419 Query: 395 ttctgcgtcgtcccgcgccacgcgctcatgcacgacgacctccacctccgc 445 ||||||||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct: 420 ttctgcgtcgtgccgcgccaccagctaatgcacgacgacctccacctccgc 470
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 371 bits (187), Expect = 1e-99 Identities = 310/351 (88%) Strand = Plus / Plus Query: 95 cggccgttcctccggggcgacctcgcggcggtcgaccccgagctgccgtcgctcgtctcc 154 |||||||||||||| ||||||||| | ||| |||||||||||||| || || || ||| Sbjct: 35614145 cggccgttcctccgcggcgacctctctcaggtggaccccgagctgccctccctggtgtcc 35614204 Query: 155 gtcctcgtgtccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccac 214 || ||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 35614205 gtgctctgcgatgccggcgccggcgagtgctaccacaagcacggcaccttcctcgcccac 35614264 Query: 215 ctcctcgacgtctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgc 274 ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||| Sbjct: 35614265 ctcatcgacgtctaccgcatcctccgcctctggggcgcccccgacgccgtggcgcgctgc 35614324 Query: 275 ggcctcttccactcctcctactccaactcctacgtcaacctcgccatcttcgagcccgac 334 ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 35614325 ggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttccagcccgac 35614384 Query: 335 gtcagccgcgcccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctc 394 ||| ||| | || |||||| |||||| |||||| ||||||||||| ||||| |||||| Sbjct: 35614385 gtcgcccgggaccacgtccggggcatcatcggcgccgccgccgagcgcctcgtccacctc 35614444 Query: 395 ttctgcgtcgtcccgcgccacgcgctcatgcacgacgacctccacctccgc 445 ||||||||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct: 35614445 ttctgcgtcgtgccgcgccaccagctaatgcacgacgacctccacctccgc 35614495 Score = 355 bits (179), Expect = 8e-95 Identities = 248/271 (91%) Strand = Plus / Plus Query: 165 ccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccacctcctcgacg 224 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 35603632 ccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacg 35603691 Query: 225 tctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgcggcctcttcc 284 || |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 35603692 tccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctacc 35603751 Query: 285 actcctcctactccaactcctacgtcaacctcgccatcttcgagcccgacgtcagccgcg 344 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 35603752 actccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcg 35603811 Query: 345 cccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctcttctgcgtcg 404 || ||| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 35603812 accacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcg 35603871 Query: 405 tcccgcgccacgcgctcatgcacgacgacct 435 ||||||||||| |||||| ||||||||||| Sbjct: 35603872 tcccgcgccaccagctcatccacgacgacct 35603902 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 cgacgacgcgctccagtccctcctc 85 ||||||||| ||||||||||||||| Sbjct: 15865231 cgacgacgccctccagtccctcctc 15865207 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cctcttccactcctcctact 296 |||||||||||||||||||| Sbjct: 29869749 cctcttccactcctcctact 29869768
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 371 bits (187), Expect = 1e-99 Identities = 310/351 (88%) Strand = Plus / Plus Query: 95 cggccgttcctccggggcgacctcgcggcggtcgaccccgagctgccgtcgctcgtctcc 154 |||||||||||||| ||||||||| | ||| |||||||||||||| || || || ||| Sbjct: 130537 cggccgttcctccgcggcgacctctctcaggtggaccccgagctgccctccctggtgtcc 130596 Query: 155 gtcctcgtgtccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccac 214 || ||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130597 gtgctctgcgatgccggcgccggcgagtgctaccacaagcacggcaccttcctcgcccac 130656 Query: 215 ctcctcgacgtctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgc 274 ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||| Sbjct: 130657 ctcatcgacgtctaccgcatcctccgcctctggggcgcccccgacgccgtggcgcgctgc 130716 Query: 275 ggcctcttccactcctcctactccaactcctacgtcaacctcgccatcttcgagcccgac 334 ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 130717 ggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttccagcccgac 130776 Query: 335 gtcagccgcgcccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctc 394 ||| ||| | || |||||| |||||| |||||| ||||||||||| ||||| |||||| Sbjct: 130777 gtcgcccgggaccacgtccggggcatcatcggcgccgccgccgagcgcctcgtccacctc 130836 Query: 395 ttctgcgtcgtcccgcgccacgcgctcatgcacgacgacctccacctccgc 445 ||||||||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct: 130837 ttctgcgtcgtgccgcgccaccagctaatgcacgacgacctccacctccgc 130887 Score = 355 bits (179), Expect = 8e-95 Identities = 248/271 (91%) Strand = Plus / Plus Query: 165 ccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccacctcctcgacg 224 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 120024 ccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacg 120083 Query: 225 tctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgcggcctcttcc 284 || |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 120084 tccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctacc 120143 Query: 285 actcctcctactccaactcctacgtcaacctcgccatcttcgagcccgacgtcagccgcg 344 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 120144 actccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcg 120203 Query: 345 cccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctcttctgcgtcg 404 || ||| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 120204 accacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcg 120263 Query: 405 tcccgcgccacgcgctcatgcacgacgacct 435 ||||||||||| |||||| ||||||||||| Sbjct: 120264 tcccgcgccaccagctcatccacgacgacct 120294
>dbj|AK105163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D02, full insert sequence Length = 1435 Score = 371 bits (187), Expect = 1e-99 Identities = 310/351 (88%) Strand = Plus / Plus Query: 95 cggccgttcctccggggcgacctcgcggcggtcgaccccgagctgccgtcgctcgtctcc 154 |||||||||||||| ||||||||| | ||| |||||||||||||| || || || ||| Sbjct: 120 cggccgttcctccgcggcgacctctctcaggtggaccccgagctgccctccctggtgtcc 179 Query: 155 gtcctcgtgtccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccac 214 || ||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 180 gtgctctgcgatgccggcgccggcgagtgctaccacaagcacggcaccttcctcgcccac 239 Query: 215 ctcctcgacgtctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgc 274 ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||| Sbjct: 240 ctcatcgacgtctaccgcatcctccgcctctggggcgcccccgacgccgtggcgcgctgc 299 Query: 275 ggcctcttccactcctcctactccaactcctacgtcaacctcgccatcttcgagcccgac 334 ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 300 ggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttccagcccgac 359 Query: 335 gtcagccgcgcccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctc 394 ||| ||| | || |||||| |||||| |||||| ||||||||||| ||||| |||||| Sbjct: 360 gtcgcccgggaccacgtccggggcatcatcggcgccgccgccgagcgcctcgtccacctc 419 Query: 395 ttctgcgtcgtcccgcgccacgcgctcatgcacgacgacctccacctccgc 445 ||||||||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct: 420 ttctgcgtcgtgccgcgccaccagctaatgcacgacgacctccacctccgc 470
>ref|XM_468512.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1516 Score = 355 bits (179), Expect = 8e-95 Identities = 248/271 (91%) Strand = Plus / Plus Query: 165 ccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccacctcctcgacg 224 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 179 ccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacg 238 Query: 225 tctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgcggcctcttcc 284 || |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 239 tccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctacc 298 Query: 285 actcctcctactccaactcctacgtcaacctcgccatcttcgagcccgacgtcagccgcg 344 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 299 actccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcg 358 Query: 345 cccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctcttctgcgtcg 404 || ||| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 359 accacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcg 418 Query: 405 tcccgcgccacgcgctcatgcacgacgacct 435 ||||||||||| |||||| ||||||||||| Sbjct: 419 tcccgcgccaccagctcatccacgacgacct 449
>dbj|AK071199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083N21, full insert sequence Length = 1516 Score = 355 bits (179), Expect = 8e-95 Identities = 248/271 (91%) Strand = Plus / Plus Query: 165 ccgccggcgccggcgagtgctaccacaagcacggcaccttcctagcccacctcctcgacg 224 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 179 ccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacg 238 Query: 225 tctaccggatcctccgcctctggggcgcgcccgacgccgtcgcccgctgcggcctcttcc 284 || |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 239 tccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctacc 298 Query: 285 actcctcctactccaactcctacgtcaacctcgccatcttcgagcccgacgtcagccgcg 344 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 299 actccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcg 358 Query: 345 cccgcgtccgcggcatcgtcggcgaggccgccgagcggctcgtgcacctcttctgcgtcg 404 || ||| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 359 accacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcg 418 Query: 405 tcccgcgccacgcgctcatgcacgacgacct 435 ||||||||||| |||||| ||||||||||| Sbjct: 419 tcccgcgccaccagctcatccacgacgacct 449
>dbj|AK072058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108P10, full insert sequence Length = 1497 Score = 335 bits (169), Expect = 7e-89 Identities = 238/261 (91%) Strand = Plus / Plus Query: 175 cggcgagtgctaccacaagcacggcaccttcctagcccacctcctcgacgtctaccggat 234 ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| || Sbjct: 175 cggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacgtccaccgcat 234 Query: 235 cctccgcctctggggcgcgcccgacgccgtcgcccgctgcggcctcttccactcctccta 294 |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||| Sbjct: 235 cctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctaccactccgccta 294 Query: 295 ctccaactcctacgtcaacctcgccatcttcgagcccgacgtcagccgcgcccgcgtccg 354 ||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||| || Sbjct: 295 ctccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcgaccacgtgcg 354 Query: 355 cggcatcgtcggcgaggccgccgagcggctcgtgcacctcttctgcgtcgtcccgcgcca 414 | ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 355 ccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcgtcccgcgcca 414 Query: 415 cgcgctcatgcacgacgacct 435 | |||||| ||||||||||| Sbjct: 415 ccagctcatccacgacgacct 435
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 347 cgcgtccgcggcatcgtcggcgaggcc 373 |||| |||||||||||||||||||||| Sbjct: 132747 cgcgaccgcggcatcgtcggcgaggcc 132773
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 347 cgcgtccgcggcatcgtcggcgaggcc 373 |||| |||||||||||||||||||||| Sbjct: 205754 cgcgaccgcggcatcgtcggcgaggcc 205780
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 347 cgcgtccgcggcatcgtcggcgaggcc 373 |||| |||||||||||||||||||||| Sbjct: 20346 cgcgaccgcggcatcgtcggcgaggcc 20372
>ref|XM_465547.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1309 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 cgacgacgcgctccagtccctcctc 85 ||||||||| ||||||||||||||| Sbjct: 334 cgacgacgccctccagtccctcctc 358
>gb|AE009116.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 142 of 256 of the complete sequence Length = 11559 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 aggccgccgagcggctcgtgc 389 ||||||||||||||||||||| Sbjct: 2830 aggccgccgagcggctcgtgc 2810
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 cgtcggcgaggccgccgagcg 381 ||||||||||||||||||||| Sbjct: 23405 cgtcggcgaggccgccgagcg 23385
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 tcgtgtccgccggcgccggcg 179 ||||||||||||||||||||| Sbjct: 57170 tcgtgtccgccggcgccggcg 57190
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 tcgtgtccgccggcgccggcg 179 ||||||||||||||||||||| Sbjct: 72699 tcgtgtccgccggcgccggcg 72679
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 aggccgccgagcggctcgtgc 389 ||||||||||||||||||||| Sbjct: 1569334 aggccgccgagcggctcgtgc 1569314
>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_F01 Length = 120026 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 cgacgacgcgctccagtccctcctc 85 ||||||||| ||||||||||||||| Sbjct: 8906 cgacgacgccctccagtccctcctc 8882
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 cgacgacgcgctccagtccctcctc 85 ||||||||| ||||||||||||||| Sbjct: 123171 cgacgacgccctccagtccctcctc 123147
>dbj|AK103767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143I02, full insert sequence Length = 1308 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 cgacgacgcgctccagtccctcctc 85 ||||||||| ||||||||||||||| Sbjct: 333 cgacgacgccctccagtccctcctc 357
>gb|AC145915.3| Gallus gallus BAC clone CH261-80C14 from chromosome unknown, complete sequence Length = 196034 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 gcgcccgcgtccgcggcatcg 362 ||||||||||||||||||||| Sbjct: 111012 gcgcccgcgtccgcggcatcg 110992
>ref|XM_467504.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1543 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cctcttccactcctcctact 296 |||||||||||||||||||| Sbjct: 591 cctcttccactcctcctact 610
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ccgcgcccgcgtccgcggca 359 |||||||||||||||||||| Sbjct: 149056 ccgcgcccgcgtccgcggca 149075
>gb|AC158164.3| Mus musculus BAC clone RP23-457E24 from chromosome 13, complete sequence Length = 137550 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ctcttccactcctcctactc 297 |||||||||||||||||||| Sbjct: 131387 ctcttccactcctcctactc 131368
>gb|AC146423.3| Pan troglodytes BAC clone RP43-25L18 from 7, complete sequence Length = 158864 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccactcctcctactccaact 302 |||||||||||||||||||| Sbjct: 53610 ccactcctcctactccaact 53591
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tccgcggcatcgtcggcgag 370 |||||||||||||||||||| Sbjct: 1161600 tccgcggcatcgtcggcgag 1161619
>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence Length = 203436 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ctcctcctactccaactcct 305 |||||||||||||||||||| Sbjct: 19701 ctcctcctactccaactcct 19720
>gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromosome 7, complete sequence Length = 206418 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccactcctcctactccaact 302 |||||||||||||||||||| Sbjct: 100688 ccactcctcctactccaact 100669
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 40.1 bits (20), Expect = 6.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 104 ctccggggc-gacctcgcggcggtcgac 130 ||||||||| |||||||||||||||||| Sbjct: 145466 ctccggggccgacctcgcggcggtcgac 145493
>gb|AC102228.8| Mus musculus chromosome 13, clone RP24-64M1, complete sequence Length = 201286 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ctcttccactcctcctactc 297 |||||||||||||||||||| Sbjct: 84638 ctcttccactcctcctactc 84657
>gb|AC012441.3| Homo sapiens BAC clone CTD-2021A8 from 7, complete sequence Length = 70184 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccactcctcctactccaact 302 |||||||||||||||||||| Sbjct: 4654 ccactcctcctactccaact 4635
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 gcggcatcgtcggcgaggccgccg 377 ||||||||||||| |||||||||| Sbjct: 224219 gcggcatcgtcggagaggccgccg 224242
>ref|XM_844404.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily 2, group F, member 2, transcript variant 2 (LOC479026), mRNA Length = 3096 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ctcctcctactccaactcct 305 |||||||||||||||||||| Sbjct: 22 ctcctcctactccaactcct 41
>ref|XM_853767.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily 2, group F, member 2, transcript variant 5 (LOC479026), mRNA Length = 3051 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ctcctcctactccaactcct 305 |||||||||||||||||||| Sbjct: 22 ctcctcctactccaactcct 41
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ggcggccggcgtcggcaacg 41 |||||||||||||||||||| Sbjct: 4127607 ggcggccggcgtcggcaacg 4127626
>emb|X07830.1|OCFERL Rabbit mRNA for ferritin light chain subunit Length = 757 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gcgaggccgccgagcggctc 385 |||||||||||||||||||| Sbjct: 280 gcgaggccgccgagcggctc 299
>gb|AY142107.1| Gallus gallus tankyrase 2 mRNA, complete cds Length = 3930 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgcgcggccgttcctccggg 110 |||||||||||||||||||| Sbjct: 17 tgcgcggccgttcctccggg 36
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 atcgtcggcgaggccgccga 378 |||||||||||||||||||| Sbjct: 292371 atcgtcggcgaggccgccga 292390
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cgccggcgccggcgagtgctacca 189 ||||||||||||||||||| |||| Sbjct: 3920824 cgccggcgccggcgagtgcaacca 3920801
>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence Length = 219476 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ccacaagcacggcaccttcc 206 |||||||||||||||||||| Sbjct: 80211 ccacaagcacggcaccttcc 80192
>gb|DQ311370.1| Bombyx mori Lix1 protein mRNA, complete cds Length = 976 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ctggggcgcgcccgacgccg 263 |||||||||||||||||||| Sbjct: 82 ctggggcgcgcccgacgccg 101
>gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene region, part 1 of 2 Length = 180000 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 tcggcgaggccgccgagcggctcg 386 ||||| |||||||||||||||||| Sbjct: 159343 tcggccaggccgccgagcggctcg 159366
>gb|AC084239.1|AC084239 Homo sapiens chromosome 19, BAC CTC-512J12 (BC347040), complete sequence Length = 176928 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cctcttccactcctcctact 296 |||||||||||||||||||| Sbjct: 114364 cctcttccactcctcctact 114383
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aggccgccgagcggctcgtg 388 |||||||||||||||||||| Sbjct: 8618187 aggccgccgagcggctcgtg 8618168 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 354 gcggcatcgtcggcgaggccgccgagcg 381 |||||||||||| || |||||||||||| Sbjct: 6166097 gcggcatcgtcgccgcggccgccgagcg 6166124 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 atcgtcggcgaggccgccga 378 |||||||||||||||||||| Sbjct: 2427367 atcgtcggcgaggccgccga 2427348
>ref|NM_204341.1| Gallus gallus tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (TNKS2), mRNA Length = 3930 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgcgcggccgttcctccggg 110 |||||||||||||||||||| Sbjct: 17 tgcgcggccgttcctccggg 36
>gb|AC138473.1| Homo sapiens chromosome 19 clone CTC-512J12, complete sequence Length = 176918 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cctcttccactcctcctact 296 |||||||||||||||||||| Sbjct: 114357 cctcttccactcctcctact 114376
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ggggcgacctcgcggcggtc 127 |||||||||||||||||||| Sbjct: 966844 ggggcgacctcgcggcggtc 966863
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 cgaggccgccgagcggctcg 386 |||||||||||||||||||| Sbjct: 286416 cgaggccgccgagcggctcg 286397
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ggcggccggcgtcggcaacg 41 |||||||||||||||||||| Sbjct: 7063933 ggcggccggcgtcggcaacg 7063952 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 cgtcggcgaggccgccgagcggct 384 ||||||| |||||||||||||||| Sbjct: 3566843 cgtcggcaaggccgccgagcggct 3566820 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 tcggcgaggccgccgagcggctcg 386 ||||| |||||||||||||||||| Sbjct: 2037828 tcggccaggccgccgagcggctcg 2037851
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 cgtcggcgaggccgccgagcggct 384 ||||| |||||||||||||||||| Sbjct: 141969 cgtcgccgaggccgccgagcggct 141992
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cctcttccactcctcctact 296 |||||||||||||||||||| Sbjct: 26714 cctcttccactcctcctact 26733
>dbj|AK070415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053E17, full insert sequence Length = 1543 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cctcttccactcctcctact 296 |||||||||||||||||||| Sbjct: 591 cctcttccactcctcctact 610
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cgaggccgccgagcggctcg 386 |||||||||||||||||||| Sbjct: 19696 cgaggccgccgagcggctcg 19715
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gccgcgcccgcgtccgcggc 358 |||||||||||||||||||| Sbjct: 307613 gccgcgcccgcgtccgcggc 307632
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 cctccggggcgacctcgcggcggtcgac 130 ||||||| ||||||||||| |||||||| Sbjct: 2059295 cctccggcgcgacctcgcgccggtcgac 2059268
>emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 220294 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttccactcctcctactcca 299 |||||||||||||||||||| Sbjct: 62735 cttccactcctcctactcca 62716
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgccggcgccggcgagtgc 184 |||||||||||||||||||| Sbjct: 108095 ccgccggcgccggcgagtgc 108114
>gb|M59242.1|RHBRPON1 Bradyrhizobium japonicum RNA polymerase sigma-54 subunit (ropN1) gene, complete cds Length = 1738 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 tcggcgaggccgccgagcggctcg 386 ||||| |||||||||||||||||| Sbjct: 642 tcggccaggccgccgagcggctcg 665 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,815,645 Number of Sequences: 3902068 Number of extensions: 2815645 Number of successful extensions: 73607 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69848 Number of HSP's gapped (non-prelim): 3760 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
