>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 24/86 (27%)
 Frame = +2

Query: 227 QGHALQH---------HRQG------RRGHAGLRARQQGHRPRRQA-LHRPVPPREAGAV 358
           +GHA +H         HR G       RGH     RQQGH P      HR     E G  
Sbjct: 590 EGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEVGPE 649

Query: 359 QPGVRG--------RVGAVDGEQGRG 412
            PG  G        R G+ + E+ +G
Sbjct: 650 SPGPAGVKDGSRVKRGGSEEEEEQKG 675

>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
           (11 kDa core protein)
          Length = 79

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 245 HHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDG 397
           H R+G  GH      ++ H  RR+A HR +       + P +   +GAV G
Sbjct: 18  HRRRGMAGHGLTGGMRRAHHRRRRASHRRMRGGILPLLIPLIAAAIGAVPG 68

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 314  QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 409
            QA  RPVPPRE G++ P + G RVG   G +GR
Sbjct: 1429 QASARPVPPRERGSL-PVIEGTRVGQEPGGRGR 1460

>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 CLAVRDGEVVLAPVNPKDETQHWL 227
           CL  +D + V+A  NP D  QHWL
Sbjct: 597 CLTSKDKKPVMATCNPSDPHQHWL 620

>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 807

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 41  RSPRRQDVRVRAPPQGPGAG 100
           R PR +  R+RA PQGPGAG
Sbjct: 305 RPPRPRPRRLRAAPQGPGAG 324

>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
 Frame = +2

Query: 233  HALQHH---RQGRRGHAGLRARQQGHRPRRQALHRPVP---------PREAGAVQPGVRG 376
            H LQHH    Q          +QQ + P +Q L   +P         P+  GAV     G
Sbjct: 1450 HHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSG 1509

Query: 377  RVGAVDGEQGRGQGLXLHXH 436
             VG V  + G G  +  H H
Sbjct: 1510 PVGHVPMQYGMGHHMQQHPH 1529

>CUTI2_ASPOR (Q2TZY7) Probable cutinase 2 precursor (EC 3.1.1.74) (Cutin|
           hydrolase 2)
          Length = 221

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +3

Query: 33  IRHALLAAKMFGFGHHHKDQAPAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPV----- 197
           ++  +    +FG+  + ++    A+ P    K+YC   +  C    DG +++ P      
Sbjct: 143 VKEKIKGVVLFGYTRNAQEHGQIANFPKDKVKVYCAVGDMVC----DGTLIVGPAHFTYL 198

Query: 198 -NPKDETQHWLKDMRF 242
            N  + TQ  L  +RF
Sbjct: 199 GNTGEATQFLLGYLRF 214

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 326 RPVPPREAGAVQPGVRGRVGAVDGEQGRGQG 418
           RP   +  G  +PG  G VGA  G  GRG G
Sbjct: 414 RPYAKKGPGGARPGTGGPVGARSGGPGRGAG 444

>PLSX_DEIRA (Q46578) Fatty acid/phospholipid synthesis protein plsX|
          Length = 360

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 239 LQHHRQGRRGHAGLRARQQGHRPRRQ---ALHRPVPPREAG-AVQPGVRGRVG 385
           L+     R   AGL   +Q  RPRRQ   A  RP P   AG A   GVRG  G
Sbjct: 298 LRREHLDRGAGAGLYRPRQRRRPRRQKRRAACRPRPRSAAGRAPGSGVRGAAG 350

>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor|
            protein 550) (AKAP 550) (dAKAP550)
          Length = 3584

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 221  LAQGHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQ-PGVRGRVGAVDG 397
            ++  H   HH Q ++  AG+  +QQ H     +     P  E   V+ P   G  G+  G
Sbjct: 2405 ISDKHDPSHHNQQQQQQAGIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGG 2464

Query: 398  -EQGRGQGL 421
               G+GQG+
Sbjct: 2465 VNSGQGQGV 2473

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 21/57 (36%), Positives = 23/57 (40%)
 Frame = +2

Query: 230 GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDGE 400
           GH   HH +GRRG    R R QG    R            GA  P VR R+    GE
Sbjct: 230 GHGDGHHLEGRRG----RPRPQGREAGR------------GAHPPQVRARIYLAAGE 270



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 242 QHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAV---QPGVRGR 379
           Q H+  R  HA  R  Q G  PRRQ L     PR AG     QP  RGR
Sbjct: 134 QQHQHPRGRHASDRV-QDGAHPRRQRLRE--QPRHAGRPRRRQPPRRGR 179

>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 281 RARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVG--AVDGEQG 406
           RAR+Q   P  QAL +  PP   G   PG  G  G   VDG+ G
Sbjct: 71  RARRQAALPDCQALAKNCPPGPPG--PPGAPGAAGEPGVDGDAG 112

>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 CLAVRDGEVVLAPVNPKDETQHWL 227
           CL  +D +  +AP NP+D  Q WL
Sbjct: 597 CLTSQDKKPAMAPCNPRDPYQLWL 620

>PROA_SERMA (P17857) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 417

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
 Frame = +3

Query: 96  PAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPVNPKDETQHWLK-DMRFSTTVKDEEGM 272
           PA S       +   A+E+    ++ G   + PVN +D    WL  D+        ++ +
Sbjct: 271 PALSAKMAAAGVTLHAAENALPLLQGGPATVVPVNAEDYDDEWLSLDLNVLLVDDIDQAI 330

Query: 273 PAFAL--VNKATGLAVKHSIGQSHPVKLVPFNPAYEDASVLWTESKDVGKG 419
                   N +  +  +      H V+ V  +  Y +AS  +T+    G G
Sbjct: 331 DHIRTHGTNHSDAILTRSLSSAEHFVRAVDSSAVYVNASTRFTDGGQFGLG 381

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 230  GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGR 379
            G      R+  RG    R + + HRP     H   P R  G V PGV  R
Sbjct: 2197 GDLPSREREQERG----RPKDRKHRPHHHHHHHHHPGRGPGRVSPGVSAR 2242

>AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2)|
          Length = 812

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 186 LAPVNPKDETQHWLKDMRFSTTVKDEEGM 272
           LA + PKD  +  + D+R ST  +DE+G+
Sbjct: 37  LAMMRPKDPVKTIMADLRCSTARRDEDGL 65

>BAB2_DROME (Q9W0K4) Protein bric-a-brac 2|
          Length = 1067

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -1

Query: 373 SYAGLNGTSFTGWDWPMECLTARPVALLTSAKAGMPSSSLTVVLKRMSLSQ 221
           +Y G  GT+  G+        A   A L    AG P SS+T  L+R  LSQ
Sbjct: 751 TYIG-GGTTTNGYHSAAAAKLAAQNAALAPPDAGSPLSSMTETLRRQILSQ 800

>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven|
          Length = 342

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 293 QGHRPRRQALHRPVPPRE-AGAVQPGVRGRVGAVDGEQGRGQG 418
           +G R RR    RP   RE  GA     RG  G   G +GRG+G
Sbjct: 8   RGGRGRRGGRERPGGDREPVGAATALARGGCGDGGGRRGRGRG 50

>BMP4_DAMDA (Q29607) Bone morphogenetic protein 4 precursor (BMP-4)|
          Length = 408

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 227 QGHALQHHRQGRRG--HAGLRARQQGHRPRRQALH 325
           +GHAL  HR+ +R   H   RAR++    RR +L+
Sbjct: 280 RGHALTRHRRAKRSPKHHPQRARKKNKNCRRHSLY 314

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 314  QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 409
            Q   RPVPPR+ G++ P + G RVG   G +GR
Sbjct: 1430 QTSARPVPPRDRGSL-PVIEGTRVGQEPGGRGR 1461

>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor|
          Length = 660

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
 Frame = +2

Query: 227 QGHALQHHR---QGRRGHAGLRAR-----QQGHRPRRQAL-------HRPVPPREAGAVQ 361
           QGH L   +   QG++GH     +     QQGH P  Q         H P   +E G   
Sbjct: 289 QGHYLASQQQPAQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQEPG--- 345

Query: 362 PGVRGRVGAVDGEQGRGQ 415
            G +G++ A   + G+GQ
Sbjct: 346 QGQQGQIPASQQQPGQGQ 363

>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor|
          Length = 648

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
 Frame = +2

Query: 227 QGHALQHHR---QGRRGHAGLRAR-----QQGHRPRRQAL-------HRPVPPREAGAVQ 361
           QGH L   +   QG++GH     +     QQGH P  Q         H P   +E G   
Sbjct: 277 QGHYLASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQEPG--- 333

Query: 362 PGVRGRVGAVDGEQGRGQ 415
            G +G++ A   + G+GQ
Sbjct: 334 QGQQGQIPASQQQPGQGQ 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.115    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,671,429
Number of Sequences: 219361
Number of extensions: 912084
Number of successful extensions: 3135
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3133
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)