ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast58h12 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 71.2 bits (173), Expect = 6e-13 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%) Frame = +3 Query: 147 NYTSMFSFGDSLTDTGNLLVSS-PLSFNIVGRFPYGMTYFHRPTGRCSDGRLVVDFLAPA 323 ++ ++F+FGDS +DTG + PL+ PYG T+FHR TGR SDGRL++DF+A + Sbjct: 31 DFPAIFNFGDSNSDTGGKAAAFYPLNP------PYGETFFHRSTGRYSDGRLIIDFIAES 84 Query: 324 FGLPLLQPYLS 356 F LP L PYLS Sbjct: 85 FNLPYLSPYLS 95
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 58.5 bits (140), Expect = 4e-09 Identities = 30/69 (43%), Positives = 44/69 (63%) Frame = +3 Query: 147 NYTSMFSFGDSLTDTGNLLVSSPLSFNIVGRFPYGMTYFHRPTGRCSDGRLVVDFLAPAF 326 ++ ++F+FGDS +DTG L + F G P+G ++F P GR DGRLV+DF+A + Sbjct: 27 HFPAIFNFGDSNSDTGGLSAA----FGQAGP-PHGSSFFGSPAGRYCDGRLVIDFIAESL 81 Query: 327 GLPLLQPYL 353 GLP L +L Sbjct: 82 GLPYLSAFL 90
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = +3 Query: 156 SMFSFGDSLTDTGNLLVSSPLSFNIVGRF-PYGMTY-FHRPTGRCSDGRLVVDFLAPAFG 329 ++F FGDS+ DTGN ++ L I + PYGM + F TGR S+G + D+LA G Sbjct: 204 AVFFFGDSVFDTGN---NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMG 260 Query: 330 LPLLQP 347 + + P Sbjct: 261 VKEIVP 266
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 37.4 bits (85), Expect = 0.009 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = +3 Query: 144 QNYT--SMFSFGDSLTDTGNLLVSSPLSFNIVGRF-PYGMTY-FHRPTGRCSDGRLVVDF 311 QN T ++F FGDS+ DTGN ++ L + + PYGM + TGR S+GR+ D+ Sbjct: 119 QNKTIPAVFFFGDSIFDTGN---NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDY 175 Query: 312 LAPAFGLPLLQP 347 ++ G+ + P Sbjct: 176 ISKYLGVKEIVP 187
>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent| haemolysin) (LDH) (Atypical phospholipase) (Phospholipase A2) (Lysophospholipase) Length = 418 Score = 32.0 bits (71), Expect = 0.38 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +3 Query: 165 SFGDSLTDTGNLLVSSPLSFNIVGRFPYGMTYFHRPTGRCSDGRLVVDFLAPAFGLPL 338 + GDSL+DTGN+ +S RFP ++F G S+G + +++A A LPL Sbjct: 149 ALGDSLSDTGNIFNASQ------WRFPNPNSWF---LGHFSNGFVWTEYIAKAKNLPL 197
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/66 (28%), Positives = 26/66 (39%) Frame = -3 Query: 328 PNAGARKSTTRRPSEQRPVGRWK*VMPYGKRPTMLKESGLDTSRLPVSVRESPKLNMEV* 149 P ++T+ RP P G ++ P GK P + +R V V P V Sbjct: 1296 PQESRLQNTSSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPP-----VP 1350 Query: 148 FCPPPP 131 PPPP Sbjct: 1351 IPPPPP 1356
>S230_PLAFO (P68875) Transmission-blocking target antigen S230 precursor| Length = 3135 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 263 EVGHAVREAADDVEGERAGHEQVAGVGQGVAE 168 EVG V E + GE G E+ VG+GV E Sbjct: 396 EVGEEVGEEVGEEVGEEVGEEEGEEVGEGVGE 427 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -2 Query: 263 EVGHAVREAADDVEGERAGHEQVAGVGQGVAEAEHGGVVLP 141 EVG V E + EGE G E+ G+ V E E G + P Sbjct: 420 EVGEGVGEEVGEEEGEEVGEEE----GEYVDEKERQGEIYP 456 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -2 Query: 263 EVGHAVREAADDVEGERAGHEQVAGVGQGVAEAE 162 EVG V E + GE G E GVG+ V E E Sbjct: 400 EVGEEVGEEVGEEVGEEEGEEVGEGVGEEVGEEE 433
>S230_PLAF7 (P68874) Transmission-blocking target antigen S230 precursor| Length = 3135 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 263 EVGHAVREAADDVEGERAGHEQVAGVGQGVAE 168 EVG V E + GE G E+ VG+GV E Sbjct: 396 EVGEEVGEEVGEEVGEEVGEEEGEEVGEGVGE 427 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -2 Query: 263 EVGHAVREAADDVEGERAGHEQVAGVGQGVAEAEHGGVVLP 141 EVG V E + EGE G E+ G+ V E E G + P Sbjct: 420 EVGEGVGEEVGEEEGEEVGEEE----GEYVDEKERQGEIYP 456 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -2 Query: 263 EVGHAVREAADDVEGERAGHEQVAGVGQGVAEAE 162 EVG V E + GE G E GVG+ V E E Sbjct: 400 EVGEEVGEEVGEEVGEEEGEEVGEGVGEEVGEEE 433
>YOR4_ADEG1 (P20746) Hypothetical 36.0 kDa protein (ORF 4) (ORF9)| Length = 321 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 264 HRPTGRCSDGRLVVDFLAPAFGLPLLQPYLSR 359 H + +CSD R V ++ P G P+ PY R Sbjct: 51 HSSSHQCSDWRTVTEWFPPQKGNPVRPPYTQR 82
>RY44_DROME (Q24498) Ryanodine receptor 44F| Length = 5127 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 129 CGGGGQNYTSMFSFGDSLTDTGNLLVSSPLSFNIVGRFPYGMTY 260 C G QN +MF D L D N+L++ P ++ G P + Y Sbjct: 2325 CRTGRQNQKAMFDHFDFLLDNANILLARP---SLRGSTPLDVAY 2365
>MTA2_MOUSE (Q9R190) Metastasis-associated protein MTA2 (Metastasis-associated| 1-like 1) Length = 668 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +2 Query: 158 HVQLRRLPDRHRQPARVQPALLQHRRPLPV 247 H+++RR R P +V+P L+ R P+P+ Sbjct: 622 HLEMRRAARRPNLPLKVKPTLMTVRPPVPL 651
>MTA2_HUMAN (O94776) Metastasis-associated protein MTA2 (Metastasis-associated| 1-like 1) (MTA1-L1 protein) (p53 target protein in deacetylase complex) Length = 668 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +2 Query: 158 HVQLRRLPDRHRQPARVQPALLQHRRPLPV 247 H+++RR R P +V+P L+ R P+P+ Sbjct: 622 HLEMRRAARRPNLPLKVKPTLIAVRPPVPL 651
>YMF02_MARPO (P38451) Hypothetical 37.0 kDa protein in RPS2 3'region (ORF 322)| Length = 322 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -3 Query: 328 PNAGARKSTTRRPSEQRPVGRWK*VMPYGKRPTM 227 P GA+ ST R RP G P G+RP M Sbjct: 178 PTEGAKVSTNGRGFSSRPTGEGNFFGPKGRRPEM 211
>SPY2_MOUSE (Q9QXV8) Sprouty homolog 2 (Spry-2)| Length = 315 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 152 HLHVQLRRLPDRHRQPARVQPALLQHRR 235 H H +L LP+ HRQP R+QP+ + R Sbjct: 77 HKHERLHGLPE-HRQPPRLQPSQVHSSR 103
>RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 372 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 245 REAADDVEGERAGHEQVAGVGQGVA 171 R A DV G+R G AG G+GVA Sbjct: 55 RPAGSDVPGDRGGGSGAAGGGRGVA 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,226,605 Number of Sequences: 219361 Number of extensions: 576511 Number of successful extensions: 1813 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1808 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
