>ref|XM_478978.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2264

 Score =  117 bits (59), Expect = 3e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
           |||| ||||||||| || ||||||||||||||||||  |||||||||| |||||||||||
Sbjct: 235 gacgtcgagaagctccggttcatcgacgagatgaccaccaacgtcgacgccgtgcaggag 294

                                                          
Query: 313 cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacct 359
           ||||||||||  |||||||||| ||| |||| || ||||||||||||
Sbjct: 295 cgcgtcctgggggagatcctcggccgcaacgccggcacggagtacct 341

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  117 bits (59), Expect = 3e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                            
Query: 253      gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
                |||| ||||||||| || ||||||||||||||||||  |||||||||| |||||||||||
Sbjct: 24098261 gacgtcgagaagctccggttcatcgacgagatgaccaccaacgtcgacgccgtgcaggag 24098202

                                                               
Query: 313      cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacct 359
                ||||||||||  |||||||||| ||| |||| || ||||||||||||
Sbjct: 24098201 cgcgtcctgggggagatcctcggccgcaacgccggcacggagtacct 24098155



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                            
Query: 272      tcatcgacgagatgacctgcaacgtcgactccgtgcaggagcgcgtcctggccgagatcc 331
                ||||||| ||| |||||| |||||| ||| ||||||||||||| |||||||| |||||||
Sbjct: 23261003 tcatcgaggagctgacctccaacgtggacgccgtgcaggagcgtgtcctggcggagatcc 23261062

                                             
Query: 332      tcgcccggaacgtcgacacggagtacctc 360
                ||| ||| |||| |||  |||||||||||
Sbjct: 23261063 tcggccgcaacgccgatgcggagtacctc 23261091



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 90/109 (82%)
 Strand = Plus / Minus

                                                                            
Query: 253      gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
                |||| ||||||||| ||  ||||||| ||  |||||| | |||| ||| |||||||||||
Sbjct: 23273493 gacgtcgagaagctccggctcatcgaagaactgacctccgacgtggacgccgtgcaggag 23273434

                                                                 
Query: 313      cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacctca 361
                ||||||||  | |||||||||| ||| |||| || | ||||||||||||
Sbjct: 23273433 cgcgtcctctcggagatcctcggccgcaacgccggcgcggagtacctca 23273385

>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1710_H11
          Length = 136107

 Score =  117 bits (59), Expect = 3e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                         
Query: 253   gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
             |||| ||||||||| || ||||||||||||||||||  |||||||||| |||||||||||
Sbjct: 31676 gacgtcgagaagctccggttcatcgacgagatgaccaccaacgtcgacgccgtgcaggag 31617

                                                            
Query: 313   cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacct 359
             ||||||||||  |||||||||| ||| |||| || ||||||||||||
Sbjct: 31616 cgcgtcctgggggagatcctcggccgcaacgccggcacggagtacct 31570

>dbj|AK101193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030I03, full
           insert sequence
          Length = 2264

 Score =  117 bits (59), Expect = 3e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
           |||| ||||||||| || ||||||||||||||||||  |||||||||| |||||||||||
Sbjct: 235 gacgtcgagaagctccggttcatcgacgagatgaccaccaacgtcgacgccgtgcaggag 294

                                                          
Query: 313 cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacct 359
           ||||||||||  |||||||||| ||| |||| || ||||||||||||
Sbjct: 295 cgcgtcctgggggagatcctcggccgcaacgccggcacggagtacct 341

>ref|XM_478829.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 tcatcgacgagatgacctgcaacgtcgactccgtgcaggagcgcgtcctggccgagatcc 331
           ||||||| ||| |||||| |||||| ||| ||||||||||||| |||||||| |||||||
Sbjct: 101 tcatcgaggagctgacctccaacgtggacgccgtgcaggagcgtgtcctggcggagatcc 160

                                        
Query: 332 tcgcccggaacgtcgacacggagtacctc 360
           ||| ||| |||| |||  |||||||||||
Sbjct: 161 tcggccgcaacgccgatgcggagtacctc 189

>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1065_B06
          Length = 113170

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                         
Query: 272   tcatcgacgagatgacctgcaacgtcgactccgtgcaggagcgcgtcctggccgagatcc 331
             ||||||| ||| |||||| |||||| ||| ||||||||||||| |||||||| |||||||
Sbjct: 16261 tcatcgaggagctgacctccaacgtggacgccgtgcaggagcgtgtcctggcggagatcc 16320

                                          
Query: 332   tcgcccggaacgtcgacacggagtacctc 360
             ||| ||| |||| |||  |||||||||||
Sbjct: 16321 tcggccgcaacgccgatgcggagtacctc 16349



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 90/109 (82%)
 Strand = Plus / Minus

                                                                         
Query: 253   gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
             |||| ||||||||| ||  ||||||| ||  |||||| | |||| ||| |||||||||||
Sbjct: 28751 gacgtcgagaagctccggctcatcgaagaactgacctccgacgtggacgccgtgcaggag 28692

                                                              
Query: 313   cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacctca 361
             ||||||||  | |||||||||| ||| |||| || | ||||||||||||
Sbjct: 28691 cgcgtcctctcggagatcctcggccgcaacgccggcgcggagtacctca 28643

>ref|XM_478833.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2030

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 90/109 (82%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
           |||| ||||||||| ||  ||||||| ||  |||||| | |||| ||| |||||||||||
Sbjct: 157 gacgtcgagaagctccggctcatcgaagaactgacctccgacgtggacgccgtgcaggag 216

                                                            
Query: 313 cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacctca 361
           ||||||||  | |||||||||| ||| |||| || | ||||||||||||
Sbjct: 217 cgcgtcctctcggagatcctcggccgcaacgccggcgcggagtacctca 265

>dbj|AK106839.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H03, full
           insert sequence
          Length = 2031

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 90/109 (82%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacgccgagaagctgcgcttcatcgacgagatgacctgcaacgtcgactccgtgcaggag 312
           |||| ||||||||| ||  ||||||| ||  |||||| | |||| ||| |||||||||||
Sbjct: 158 gacgtcgagaagctccggctcatcgaagaactgacctccgacgtggacgccgtgcaggag 217

                                                            
Query: 313 cgcgtcctggccgagatcctcgcccggaacgtcgacacggagtacctca 361
           ||||||||  | |||||||||| ||| |||| || | ||||||||||||
Sbjct: 218 cgcgtcctctcggagatcctcggccgcaacgccggcgcggagtacctca 266

>gb|AC154844.2| Mus musculus BAC clone RP23-46K13 from chromosome 16, complete sequence
          Length = 196946

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 90     attcttcacctagctctagctc 111
              ||||||||||||||||||||||
Sbjct: 191219 attcttcacctagctctagctc 191198

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 249     caaggacgccgagaagctgcgc 270
               ||||||||||||||||||||||
Sbjct: 3284271 caaggacgccgagaagctgcgc 3284250



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 258    cgagaagctgcgcttcatcgacgagatg 285
              ||||| |||||||||||||| |||||||
Sbjct: 301923 cgagatgctgcgcttcatcgccgagatg 301896

>emb|Z23086.1|LFSOXLF3 L.fuscus sox gene (partial)
          Length = 169

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 253 gacgccgagaagctgcgcttcatcgacgag 282
           ||||||||||||| || |||||||||||||
Sbjct: 107 gacgccgagaagcggcccttcatcgacgag 136

>gb|DQ206644.1| Taeniopygia guttata SRY box3 (SOX3) mRNA, partial cds
          Length = 1483

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 253 gacgccgagaagctgcgcttcatcgacgag 282
           ||||||||||||| || |||||||||||||
Sbjct: 75  gacgccgagaagcggcccttcatcgacgag 104

>gb|S69429.1| testis-determining gene/SRY homolog [Sminthopsis
           macroura=striped-faced dunnarts, Genomic, 855 nt]
          Length = 855

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 253 gacgccgagaagctgcgcttcatcgacgag 282
           ||||||||||||| || |||||||||||||
Sbjct: 475 gacgccgagaagcggcccttcatcgacgag 504

>gb|AC156014.2| Mus musculus BAC clone RP24-439D9 from chromosome 16, complete sequence
          Length = 194272

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    attcttcacctagctctagctc 111
             ||||||||||||||||||||||
Sbjct: 31303 attcttcacctagctctagctc 31282

>gb|AY112712.1|AY112712S1 Ornithorhynchus anatinus SOX2 (SOX2) gene, partial cds
          Length = 206

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 253 gacgccgagaagctgcgcttcatcgacgag 282
           ||||||||||||| || |||||||||||||
Sbjct: 121 gacgccgagaagcggcccttcatcgacgag 150

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 262    aagctgcgcttcatcgacgagatgac 287
              |||||||||||| |||||||||||||
Sbjct: 663316 aagctgcgcttcctcgacgagatgac 663341



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 245     aagccaaggacgccgagaagc 265
               |||||||||||||||||||||
Sbjct: 8137372 aagccaaggacgccgagaagc 8137352

>gb|AF219636.1|AF219636 Monopterus albus Sox19 protein (Sox19) gene, partial cds
          Length = 162

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 253 gacgccgagaagctgcgcttcatcgacga 281
           ||||||||||||| || ||||||||||||
Sbjct: 97  gacgccgagaagcggcccttcatcgacga 125

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 217    ccggtggcggaggctgcggcc 237
              |||||||||||||||||||||
Sbjct: 938843 ccggtggcggaggctgcggcc 938823

>emb|AL139380.6| Human DNA sequence from clone RP11-463M3 on chromosome 13 Contains the
             5' end of a novel gene, a G protein-coupled receptor
             kinase 6 (GPRK6)(GRK6) pseudogene and two CpG islands,
             complete sequence
          Length = 45797

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   ggcgatcggcgcggctctgc 199
             ||||||||||||||||||||
Sbjct: 10069 ggcgatcggcgcggctctgc 10050

>gb|AC114971.2| Homo sapiens chromosome 5 clone RP11-3H15, complete sequence
          Length = 146463

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    ttccctgctctgcttctcct 134
              ||||||||||||||||||||
Sbjct: 115821 ttccctgctctgcttctcct 115840

>ref|NG_001133.1| Homo sapiens G protein-coupled receptor kinase 6 pseudogene
           (GRK6PS) on chromosome 13
          Length = 2617

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 ggcgatcggcgcggctctgc 199
           ||||||||||||||||||||
Sbjct: 58  ggcgatcggcgcggctctgc 39

>dbj|D42137.2| Rattus norvegicus gene for annexin V, complete cds
          Length = 4932

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    taccaccacaacacagcagt 28
            ||||||||||||||||||||
Sbjct: 3036 taccaccacaacacagcagt 3017

>dbj|AB074838.1| Synechococcus sp. PCC 7001 rpoD1 gene for principal sigma factor,
           partial cds
          Length = 609

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 cgagaagctgcgcttcatcg 277
           ||||||||||||||||||||
Sbjct: 336 cgagaagctgcgcttcatcg 355

>gb|AC145116.3| Mus musculus BAC clone RP23-434H14 from 6, complete sequence
          Length = 204134

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   ccctgctctgcttctcctag 136
             ||||||||||||||||||||
Sbjct: 73777 ccctgctctgcttctcctag 73796

>emb|CT485796.1| Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE
          Length = 129047

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    ggccgcagcaaaagccaagg 253
              ||||||||||||||||||||
Sbjct: 125597 ggccgcagcaaaagccaagg 125578


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,871,125
Number of Sequences: 3902068
Number of extensions: 1871125
Number of successful extensions: 39418
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39102
Number of HSP's gapped (non-prelim): 316
length of query: 363
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 341
effective length of database: 17,147,199,772
effective search space: 5847195122252
effective search space used: 5847195122252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)