>CUTS_STRLI (P0A4I8) Sensor protein cutS (EC 2.7.13.3)|
          Length = 414

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 344 PPGCGPAETYSTWPRSVHPGSECRPTMRVLFTFL 243
           PPG  P  T+   PRS  P    RPT+R+  T L
Sbjct: 7   PPGAPPKPTWD--PRSATPLPWLRPTIRIRLTLL 38

>CUTS_STRCO (P0A4I7) Sensor protein cutS (EC 2.7.13.3)|
          Length = 414

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 344 PPGCGPAETYSTWPRSVHPGSECRPTMRVLFTFL 243
           PPG  P  T+   PRS  P    RPT+R+  T L
Sbjct: 7   PPGAPPKPTWD--PRSATPLPWLRPTIRIRLTLL 38

>NAPA_DESDE (P81186) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 755

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 338 GCGPAETYSTWPRSVHPGSECRPTMRVLFTF 246
           GCG    YS   ++V P  +CRPT+  L  F
Sbjct: 504 GCGERR-YSLTEKAVDPPGQCRPTVNTLVEF 533

>APBB2_MOUSE (Q9DBR4) Amyloid beta A4 precursor protein-binding family B member|
           2
          Length = 760

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 219 ERQLRDGAEEGEQDPHRGPALAAGVD 296
           E QLR  AE+G+QDP++  + AA ++
Sbjct: 104 ENQLRKAAEQGQQDPNKNLSPAAVIN 129

>DPOL_EHV1V (Q6S6P1) DNA polymerase (EC 2.7.7.7)|
          Length = 1220

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 389 PRRSACTPCGTAKNMPPGCGPAETYSTWPRSVHPGSECRP 270
           P+ S CT  G+ K + P C   E  +   R VH G+  RP
Sbjct: 42  PQHSYCTEVGSFKFIAPRCLDEEAPADQRRGVHVGTLERP 81

>DPOL_EHV1B (P28858) DNA polymerase (EC 2.7.7.7)|
          Length = 1220

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 389 PRRSACTPCGTAKNMPPGCGPAETYSTWPRSVHPGSECRP 270
           P+ S CT  G+ K + P C   E  +   R VH G+  RP
Sbjct: 42  PQHSYCTEVGSFKFIAPRCLDEEAPADQRRGVHVGTLERP 81

>WDR6_HUMAN (Q9NNW5) WD-repeat protein 6|
          Length = 1121

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 199 DAEGLLMNGNFETAPRKVNKTLIVGR-HSLPGWTLRGHVEYVSAGPQPGGM 348
           + EG +      T    V++TL  G+ HSL  W LRG+ E +     PGG+
Sbjct: 412 NGEGRVKVVPINTPTAAVDQTLFPGKVHSL-SWALRGYEELLLLASGPGGV 461

>LYAM3_BOVIN (P42201) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 646

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 389 PRRSACTPCGTAKNMPPGCGPAETYSTWPRSVHPGSECRPTM 264
           P R  CTP G     PP C   +T S    +  PG +C PT+
Sbjct: 425 PERLDCTPSGHWTGSPPTCEEVDTVS----APAPGVQC-PTL 461

>ZAN_HUMAN (Q9Y493) Zonadhesin precursor|
          Length = 2812

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 323  PPGRSPAACSSPCRTACT 376
            PPG S + CSSPC   C+
Sbjct: 1813 PPGSSYSPCSSPCPDTCS 1830

>AKP8L_MOUSE (Q9R0L7) A-kinase anchor protein 8-like (AKAP8-like protein)|
           (Neighbor of A-kinase-anchoring protein 95) (Neighbor of
           AKAP95)
          Length = 642

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 216 DERQLRDGAEEGEQDPHRGPALA 284
           DE    DG EEG++DP +G   A
Sbjct: 333 DEEGKEDGREEGKEDPEKGALTA 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,767,084
Number of Sequences: 219361
Number of extensions: 530223
Number of successful extensions: 2209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)