ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596618.1| Saccharum officinarum clone SCCCCL4009G04, complete sequence Length = 811 Score = 285 bits (144), Expect = 5e-74 Identities = 185/199 (92%) Strand = Plus / Plus Query: 193 gctcaggacgctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtg 252 ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| || Sbjct: 183 gctcaagacgctgaaggcctgctcatcaacggcaacttcgagacggcgccgaggaagctg 242 Query: 253 aacaagaccctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacgtc 312 ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||| Sbjct: 243 aacaagaccctcatcgtgggccggcactcgctgcctgggtggacggtgcaggggcacgtg 302 Query: 313 gagtacgtctccgccgggccgcagcccggcggcatgttcttcgccgtgccgcacggcgtg 372 ||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 303 gagtacgtctcgggcgggccgcagcccgggggcatgttcttcgcggtgccgcacggcgtg 362 Query: 373 cacgcgctccgcctnggca 391 |||||||||||||| |||| Sbjct: 363 cacgcgctccgcctcggca 381
>ref|XM_470036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1474 Score = 281 bits (142), Expect = 8e-73 Identities = 177/189 (93%) Strand = Plus / Plus Query: 202 gctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtgaacaagacc 261 ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 236 gctgaaggcctcctcatcaatggcaacttcgagacggcgccgaggaaggtgaacaagaca 295 Query: 262 ctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacgtcgagtacgtc 321 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 296 ctcatcgtcggccgccactcgctgccggggtggacgctgcgggggcacgtcgagtacgtc 355 Query: 322 tccgccgggccgcagcccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctc 381 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 356 tccggcgggccgcagcccggcggcatgttcttcgcggtgccgcacggcgtgcacgctctc 415 Query: 382 cgcctnggc 390 ||||| ||| Sbjct: 416 cgcctgggc 424
>dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D10, full insert sequence Length = 1396 Score = 281 bits (142), Expect = 8e-73 Identities = 177/189 (93%) Strand = Plus / Plus Query: 202 gctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtgaacaagacc 261 ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 235 gctgaaggcctcctcatcaatggcaacttcgagacggcgccgaggaaggtgaacaagaca 294 Query: 262 ctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacgtcgagtacgtc 321 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 295 ctcatcgtcggccgccactcgctgccggggtggacgctgcgggggcacgtcgagtacgtc 354 Query: 322 tccgccgggccgcagcccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctc 381 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 355 tccggcgggccgcagcccggcggcatgttcttcgcggtgccgcacggcgtgcacgctctc 414 Query: 382 cgcctnggc 390 ||||| ||| Sbjct: 415 cgcctgggc 423
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 272 bits (137), Expect = 8e-70 Identities = 160/168 (95%) Strand = Plus / Plus Query: 223 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 33462563 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 33462622 Query: 283 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 342 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 33462623 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 33462682 Query: 343 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctnggc 390 |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 33462683 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggc 33462730
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 272 bits (137), Expect = 8e-70 Identities = 160/168 (95%) Strand = Plus / Minus Query: 223 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 35548 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 35489 Query: 283 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 342 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 35488 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 35429 Query: 343 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctnggc 390 |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 35428 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggc 35381
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 272 bits (137), Expect = 8e-70 Identities = 160/168 (95%) Strand = Plus / Plus Query: 223 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 33553073 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 33553132 Query: 283 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 342 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 33553133 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 33553192 Query: 343 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctnggc 390 |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 33553193 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggc 33553240
>dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P15, full insert sequence Length = 1182 Score = 272 bits (137), Expect = 8e-70 Identities = 160/168 (95%) Strand = Plus / Plus Query: 223 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 42 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 101 Query: 283 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 342 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 102 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 161 Query: 343 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctnggc 390 |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 162 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggc 209
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 113 bits (57), Expect = 4e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 278 actcgctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagc 337 ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||| Sbjct: 5802236 actcgctgccggggtgggcgctgcgcggccgcgtcgagtacgtctccggcgggccgcagc 5802295 Query: 338 ccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcct 386 ||||||| |||| |||||||| ||| |||| |||||||||||||| Sbjct: 5802296 ccggcgggatgtacttcgccgccgcgccgggcgcccacgcgctccgcct 5802344
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 113 bits (57), Expect = 4e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 278 actcgctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagc 337 ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||| Sbjct: 109264 actcgctgccggggtgggcgctgcgcggccgcgtcgagtacgtctccggcgggccgcagc 109323 Query: 338 ccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcct 386 ||||||| |||| |||||||| ||| |||| |||||||||||||| Sbjct: 109324 ccggcgggatgtacttcgccgccgcgccgggcgcccacgcgctccgcct 109372
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgcc 117 |||||||||||||||||||||| Sbjct: 26599293 ctccgcctcctccgccgtcgcc 26599314
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0460H04 Length = 166490 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgcc 117 |||||||||||||||||||||| Sbjct: 132946 ctccgcctcctccgccgtcgcc 132967
>dbj|AP004803.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0677B10 Length = 134423 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgcc 117 |||||||||||||||||||||| Sbjct: 15723 ctccgcctcctccgccgtcgcc 15744
>gb|U46602.1|ZMU46602 Zea mays USDA Ames 15820 ITS1, 5.8S ribosomal RNA, ITS2 Length = 599 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 gccgggccgcagcccggcggca 346 |||||||||||||||||||||| Sbjct: 63 gccgggccgcagcccggcggca 42
>ref|XM_480945.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 253 cgtctccgcctcctccgccgccgcc 229
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 68793 cgtctccgcctcctccgccgccgcc 68769
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cgccgtcgccacgctcgccgt 128 ||||||||||||||||||||| Sbjct: 1565589 cgccgtcgccacgctcgccgt 1565609
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 18861924 cgtctccgcctcctccgccgccgcc 18861948 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 18917046 ccgcctcctccgccgtcgcc 18917027
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 12901457 cgtctccgcctcctccgccgccgcc 12901433
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 8820820 cgtctccgcctcctccgccgccgcc 8820844
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 98569 cgtctccgcctcctccgccgccgcc 98593
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1033_B09 Length = 120648 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 4463 cgtctccgcctcctccgccgccgcc 4487
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 12981664 cgtctccgcctcctccgccgccgcc 12981640
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 18788151 cgtctccgcctcctccgccgccgcc 18788175 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 18843273 ccgcctcctccgccgtcgcc 18843254
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 cgtctccgcctcctccgccgtcgcc 117 |||||||||||||||||||| |||| Sbjct: 108455 cgtctccgcctcctccgccgccgcc 108431 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 53333 ccgcctcctccgccgtcgcc 53352
>emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chromosome 4, complete sequence Length = 200628 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 ctgcgtcgccaagctcgcttg 49 ||||||||||||||||||||| Sbjct: 37924 ctgcgtcgccaagctcgcttg 37944
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 gcggcatgttcttcgccgtgccgc 364 ||||||||||||||||| |||||| Sbjct: 194098 gcggcatgttcttcgccttgccgc 194075
>ref|XM_476187.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1869 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctccgccgtcgccacgctcg 124 |||||||||||||||||||| Sbjct: 1641 ctccgccgtcgccacgctcg 1660
>gb|AY492272.1| Corynebacterium variabile strain CIP 102112 RpoB (rpoB) gene, partial cds Length = 3343 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cgtcgagtacgtctccgccg 328 |||||||||||||||||||| Sbjct: 1883 cgtcgagtacgtctccgccg 1902
>ref|XM_954917.1| Neurospora crassa OR74A hypothetical protein (NCU06148.1) partial mRNA Length = 2316 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cctcctccgccgtcgccacg 120 |||||||||||||||||||| Sbjct: 2053 cctcctccgccgtcgccacg 2034
>ref|XM_326002.1| Neurospora crassa OR74A hypothetical protein (NCU06148.1) partial mRNA Length = 2316 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cctcctccgccgtcgccacg 120 |||||||||||||||||||| Sbjct: 2053 cctcctccgccgtcgccacg 2034
>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08, complete sequence Length = 152527 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ctccgccgtcgccacgctcg 124 |||||||||||||||||||| Sbjct: 17010 ctccgccgtcgccacgctcg 16991
>gb|BC059215.1| Mus musculus transcriptional regulating factor 1, mRNA (cDNA clone MGC:66566 IMAGE:6412734), complete cds Length = 4555 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 2342 ctccgcctcctccgccgccgccac 2365
>gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, complete sequence Length = 206979 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 102762 ctccgcctcctccgccgccgccac 102785
>emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on chromosome 22, complete sequence Length = 35860 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cgtctccgcctcctccgccg 112 |||||||||||||||||||| Sbjct: 23283 cgtctccgcctcctccgccg 23264
>dbj|AK046822.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830015H24 product:ZINC FINGER TRANSCRIPTION FACTOR TREP-132 homolog [Homo sapiens], full insert sequence Length = 3953 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 1820 ctccgcctcctccgccgccgccac 1843
>dbj|AK035176.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430096I18 product:similar to ZINC FINGER TRANSCRIPTION FACTOR TREP-132 [Homo sapiens], full insert sequence Length = 3255 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 1949 ctccgcctcctccgccgccgccac 1972
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 207 aggcctgctgatgaacggcaacttcgag 234 |||||||||| | ||||||||||||||| Sbjct: 24702563 aggcctgctgctcaacggcaacttcgag 24702590
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 ctgcgtctccgcctcctccgccgtcgcc 117 |||||||||| |||||||||||| |||| Sbjct: 20042307 ctgcgtctcctcctcctccgccgccgcc 20042334
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ctccgccgtcgccacgctcg 124 |||||||||||||||||||| Sbjct: 7278755 ctccgccgtcgccacgctcg 7278736
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 30029779 ccgcctcctccgccgtcgcc 30029798
>gb|AY081774.1| Mus musculus transcriptional regulating protein 132 mRNA, complete cds Length = 4272 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 2089 ctccgcctcctccgccgccgccac 2112
>gb|AF345236.1|AF345236 Narenga porphyrocoma isolate R36 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 gccgggccgcagcccggcggcatg 348 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF345235.1|AF345235 Narenga porphyrocoma isolate R35 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 gccgggccgcagcccggcggcatg 348 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF345234.1|AF345234 Narenga porphyrocoma isolate R34 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 gccgggccgcagcccggcggcatg 348 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF345233.1|AF345233 Narenga porphyrocoma isolate R33 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 gccgggccgcagcccggcggcatg 348 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 of the complete genome Length = 14652 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 gcctgctgatgaacggcaacttcg 232 ||||||||||| |||||||||||| Sbjct: 5067 gcctgctgatggacggcaacttcg 5044
>dbj|AB080263.1| Oryza sativa (japonica cultivar-group) OsRad51A2 gene for Rad51, complete cds Length = 4165 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 851 ccgcctcctccgccgtcgcc 832
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 9376 ccgcctcctccgccgtcgcc 9395
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcttcgccgtgccgcacggc 369 |||||||||||||||||||| Sbjct: 5410645 tcttcgccgtgccgcacggc 5410626
>dbj|AP006175.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0669G04 Length = 74610 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 ctgcgtctccgcctcctccgccgtcgcc 117 |||||||||| |||||||||||| |||| Sbjct: 49438 ctgcgtctcctcctcctccgccgccgcc 49465
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 130055 ccgcctcctccgccgtcgcc 130074
>dbj|AK120886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028P22, full insert sequence Length = 2111 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctccgccgtcgccacgctcg 124 |||||||||||||||||||| Sbjct: 1690 ctccgccgtcgccacgctcg 1709
>dbj|AK101403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037G04, full insert sequence Length = 2423 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 ctgcgtctccgcctcctccgccgtcgcc 117 |||||||||| |||||||||||| |||| Sbjct: 14 ctgcgtctcctcctcctccgccgccgcc 41
>gb|U46633.1|ZMU46633 Zea mays ssp. mexicana Doebley M092 ITS1, 5.8S ribosomal RNA, ITS2 Length = 602 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 gccgggccgcagcccggcggcatg 348 ||||||||| |||||||||||||| Sbjct: 63 gccgggccggagcccggcggcatg 40
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 207 aggcctgctgatgaacggcaacttcgag 234 |||||||||| | ||||||||||||||| Sbjct: 92086 aggcctgctgctcaacggcaacttcgag 92113
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 13163 ccgcctcctccgccgtcgcc 13144
>ref|NM_172622.1| Mus musculus transcriptional regulating factor 1 (Trerf1), mRNA Length = 3953 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 1820 ctccgcctcctccgccgccgccac 1843
>gb|BC108416.1| Mus musculus transcriptional regulating factor 1, mRNA (cDNA clone MGC:118525 IMAGE:5697521), complete cds Length = 4018 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctccgcctcctccgccgtcgccac 119 ||||||||||||||||| |||||| Sbjct: 1802 ctccgcctcctccgccgccgccac 1825
>dbj|AB080264.1| Oryza sativa (japonica cultivar-group) OsRad51A2 mRNA for Rad51, complete cds Length = 1303 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcctcctccgccgtcgcc 117 |||||||||||||||||||| Sbjct: 52 ccgcctcctccgccgtcgcc 33 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,024,833 Number of Sequences: 3902068 Number of extensions: 2024833 Number of successful extensions: 54716 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53601 Number of HSP's gapped (non-prelim): 1115 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
