ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479148.1| Oryza sativa (japonica cultivar-group), mRNA 52 7e-04
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
3dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
4dbj|AK109489.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
5dbj|AK069163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
6gb|AE004142.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 50 0.003
7ref|XM_958769.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.041
8ref|XM_330527.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.041
9ref|XM_710424.1| Candida albicans SC5314 hypothetical protein (C... 44 0.16
10ref|XM_710423.1| Candida albicans SC5314 hypothetical protein (C... 44 0.16
11ref|XM_710354.1| Candida albicans SC5314 hypothetical protein (C... 44 0.16
12ref|XM_710353.1| Candida albicans SC5314 hypothetical protein (C... 44 0.16
13emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete ch... 44 0.16
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.64
15dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.64
16dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.64
17emb|BX813307.3| Mouse DNA sequence from clone RP23-454B5 on chro... 42 0.64
18emb|BX539342.9| Mouse DNA sequence from clone RP24-67F19 on chro... 42 0.64
19gb|AC122432.4| Mus musculus BAC clone RP24-187F8 from 7, complet... 42 0.64
20gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 2.5
21gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, co... 40 2.5
22ref|XM_517157.1| PREDICTED: Pan troglodytes similar to huntingti... 40 2.5
23gb|BC022804.1| Homo sapiens huntingtin interacting protein 2, mR... 40 2.5
24ref|NM_005339.3| Homo sapiens huntingtin interacting protein 2 (... 40 2.5
25emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 2.5
26ref|XM_750315.1| Aspergillus fumigatus Af293 RNA helicase Dbp (A... 40 2.5
27ref|XM_858240.1| PREDICTED: Canis familiaris similar to huntingt... 40 2.5
28ref|XM_858222.1| PREDICTED: Canis familiaris similar to huntingt... 40 2.5
29ref|XM_858200.1| PREDICTED: Canis familiaris similar to huntingt... 40 2.5
30ref|XM_846094.1| PREDICTED: Canis familiaris similar to huntingt... 40 2.5
31gb|AC114934.2| Homo sapiens chromosome 5 clone CTD-2029K19, comp... 40 2.5
32gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 2.5
33gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 40 2.5
34emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 2.5
35gb|AC109475.3| Homo sapiens chromosome 5 clone RP11-416F23, comp... 40 2.5
36gb|AC093506.2| Homo sapiens chromosome 5 clone CTD-2021M10, comp... 40 2.5
37dbj|AK093533.1| Homo sapiens cDNA FLJ36214 fis, clone THYMU20006... 40 2.5
38emb|CR606205.1| full-length cDNA clone CS0DI068YA21 of Placenta ... 40 2.5
39gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, comple... 40 2.5
40emb|BX005294.6| Zebrafish DNA sequence from clone CH211-189K21 i... 40 2.5
41gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, comp... 40 2.5
42gb|AC138836.2| Homo sapiens chromosome 5 clone RP11-1221E9, comp... 40 2.5
43gb|AC138853.2| Homo sapiens chromosome 5 clone RP11-1325J9, comp... 40 2.5
44gb|AC138917.2| Homo sapiens chromosome 5 clone RP11-630I7, compl... 40 2.5
45gb|BC050600.1| Homo sapiens huntingtin interacting protein 2, mR... 40 2.5
46gb|BC006419.1| Homo sapiens cDNA clone IMAGE:3946309, complete cds 40 2.5
47gb|AC121114.10| Mus musculus chromosome 15, clone RP23-63M19, co... 40 2.5
48gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 2.5
49dbj|AB022436.1| Homo sapiens LIG mRNA for E2 ubiquitin-conjugati... 40 2.5
50dbj|AB022435.1| Homo sapiens LIG mRNA for E2 ubiquitin-conjugati... 40 2.5 
>ref|XM_479148.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1468

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 161 cacgtcgcgctcaactgccccatccagccg 190
           |||||||||||| |||||||||||||||||
Sbjct: 102 cacgtcgcgctccactgccccatccagccg 131
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 161      cacgtcgcgctcaactgccccatccagccg 190
                |||||||||||| |||||||||||||||||
Sbjct: 25234123 cacgtcgcgctccactgccccatccagccg 25234152
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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0616D06
          Length = 153800

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 161   cacgtcgcgctcaactgccccatccagccg 190
             |||||||||||| |||||||||||||||||
Sbjct: 50794 cacgtcgcgctccactgccccatccagccg 50823
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>dbj|AK109489.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A10, full
           insert sequence
          Length = 1468

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 161 cacgtcgcgctcaactgccccatccagccg 190
           |||||||||||| |||||||||||||||||
Sbjct: 102 cacgtcgcgctccactgccccatccagccg 131
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>dbj|AK069163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006C12, full
           insert sequence
          Length = 1431

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 161 cacgtcgcgctcaactgccccatccagccg 190
           |||||||||||| |||||||||||||||||
Sbjct: 164 cacgtcgcgctccactgccccatccagccg 193
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>gb|AE004142.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 50
            of 251 of the complete chromosome
          Length = 10566

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 127  ggcggcggtggccgtggtcgtttcggtggcggt 159
            |||||||||||||||||| ||||||| ||||||
Sbjct: 2417 ggcggcggtggccgtggtggtttcggcggcggt 2449
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>ref|XM_958769.1| Neurospora crassa OR74A hypothetical protein (NCU03092.1) partial
            mRNA
          Length = 1287

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 130  ggcggtggccgtggtcgtttcggtggc 156
            ||||||||||||||| |||||||||||
Sbjct: 1141 ggcggtggccgtggtggtttcggtggc 1167
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>ref|XM_330527.1| Neurospora crassa OR74A hypothetical protein (NCU03092.1) partial
            mRNA
          Length = 1287

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 130  ggcggtggccgtggtcgtttcggtggc 156
            ||||||||||||||| |||||||||||
Sbjct: 1141 ggcggtggccgtggtggtttcggtggc 1167
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>ref|XM_710424.1| Candida albicans SC5314 hypothetical protein (CaO19_10650), mRNA
          Length = 951

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 133 ggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| |||||||||||||
Sbjct: 43  ggtggccgtggtggtttcggtggcgg 68
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>ref|XM_710423.1| Candida albicans SC5314 hypothetical protein (CaO19_10649), mRNA
          Length = 321

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 133 ggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| |||||||||||||
Sbjct: 257 ggtggccgtggtggtttcggtggcgg 232
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>ref|XM_710354.1| Candida albicans SC5314 hypothetical protein (CaO19_3138), mRNA
          Length = 951

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 133 ggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| |||||||||||||
Sbjct: 43  ggtggccgtggtggtttcggtggcgg 68
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>ref|XM_710353.1| Candida albicans SC5314 hypothetical protein (CaO19_3137), mRNA
          Length = 321

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 133 ggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| |||||||||||||
Sbjct: 257 ggtggccgtggtggtttcggtggcgg 232
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>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12
          Length = 294800

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 120    tgggcacggcggcggtggccgt 141
              ||||||||||||||||||||||
Sbjct: 179744 tgggcacggcggcggtggccgt 179723
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 126      cggcggcggtggccgtggtcg 146
                |||||||||||||||||||||
Sbjct: 22453012 cggcggcggtggccgtggtcg 22453032
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>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016D04
          Length = 147313

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   cggcggcggtggccgtggtcg 146
             |||||||||||||||||||||
Sbjct: 23368 cggcggcggtggccgtggtcg 23388
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>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_A05
          Length = 113326

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    cggcggcggtggccgtggtcg 146
              |||||||||||||||||||||
Sbjct: 109231 cggcggcggtggccgtggtcg 109251
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>emb|BX813307.3| Mouse DNA sequence from clone RP23-454B5 on chromosome 7, complete
           sequence
          Length = 30174

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  ctgtgctgccagcagccagta 31
           |||||||||||||||||||||
Sbjct: 322 ctgtgctgccagcagccagta 342
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>emb|BX539342.9| Mouse DNA sequence from clone RP24-67F19 on chromosome 7, complete
              sequence
          Length = 155752

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     ctgtgctgccagcagccagta 31
              |||||||||||||||||||||
Sbjct: 154074 ctgtgctgccagcagccagta 154094
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>gb|AC122432.4| Mus musculus BAC clone RP24-187F8 from 7, complete sequence
          Length = 163515

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    ctgtgctgccagcagccagta 31
             |||||||||||||||||||||
Sbjct: 70391 ctgtgctgccagcagccagta 70371
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     ggcggcggtggccgtggtcg 146
               ||||||||||||||||||||
Sbjct: 1464562 ggcggcggtggccgtggtcg 1464543
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>gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, complete sequence
          Length = 200922

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     accagttgggtggtgtgctg 87
              ||||||||||||||||||||
Sbjct: 175661 accagttgggtggtgtgctg 175680
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>ref|XM_517157.1| PREDICTED: Pan troglodytes similar to huntingtin interacting
           protein 2 (LOC461178), mRNA
          Length = 978

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 81  ggcggcggtggcggtggtcgtagcggtggcgg 112
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>gb|BC022804.1| Homo sapiens huntingtin interacting protein 2, mRNA (cDNA clone
           MGC:39129 IMAGE:4893778), complete cds
          Length = 976

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 95  ggcggcggtggcggtggtcgtagcggtggcgg 126
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>ref|NM_005339.3| Homo sapiens huntingtin interacting protein 2 (HIP2), mRNA
          Length = 2208

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 12  ggcggcggtggcggtggtcgtagcggtggcgg 43
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    cggcggcggtggccgtggtc 145
              ||||||||||||||||||||
Sbjct: 486853 cggcggcggtggccgtggtc 486834
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>ref|XM_750315.1| Aspergillus fumigatus Af293 RNA helicase Dbp (Afu2g10750) partial
            mRNA
          Length = 1698

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  gcggcggtggccgtggtcgt 147
            ||||||||||||||||||||
Sbjct: 1622 gcggcggtggccgtggtcgt 1641
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>ref|XM_858240.1| PREDICTED: Canis familiaris similar to huntingtin interacting
           protein 2, transcript variant 4 (LOC609531), mRNA
          Length = 2239

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 84  ggcggcggtggcggtggtcgtagcggtggcgg 115
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>ref|XM_858222.1| PREDICTED: Canis familiaris similar to huntingtin interacting
           protein 2, transcript variant 3 (LOC609531), mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 117 ggcggcggtggcggtggtcgtagcggtggcgg 148
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>ref|XM_858200.1| PREDICTED: Canis familiaris similar to huntingtin interacting
           protein 2, transcript variant 2 (LOC609531), mRNA
          Length = 2287

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 108 ggcggcggtggcggtggtcgtagcggtggcgg 139
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>ref|XM_846094.1| PREDICTED: Canis familiaris similar to huntingtin interacting
           protein 2, transcript variant 1 (LOC609531), mRNA
          Length = 2412

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 104 ggcggcggtggcggtggtcgtagcggtggcgg 135
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>gb|AC114934.2| Homo sapiens chromosome 5 clone CTD-2029K19, complete sequence
          Length = 114356

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 82209 accagttgggtggggtgctgctgt 82186
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 126     cggcggcggtggccgtggtc 145
               ||||||||||||||||||||
Sbjct: 2136137 cggcggcggtggccgtggtc 2136118
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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ctgccccatccagccggtcc 194
              ||||||||||||||||||||
Sbjct: 220399 ctgccccatccagccggtcc 220380
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>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11
          Length = 302050

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     gcttcgttattcagttcagc 63
              ||||||||||||||||||||
Sbjct: 233424 gcttcgttattcagttcagc 233405
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>gb|AC109475.3| Homo sapiens chromosome 5 clone RP11-416F23, complete sequence
          Length = 192464

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 74705 accagttgggtggggtgctgctgt 74682
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>gb|AC093506.2| Homo sapiens chromosome 5 clone CTD-2021M10, complete sequence
          Length = 132899

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 90885 accagttgggtggggtgctgctgt 90908
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>dbj|AK093533.1| Homo sapiens cDNA FLJ36214 fis, clone THYMU2000672, highly similar
           to UBIQUITIN-CONJUGATING ENZYME E2-25 KDA (EC 6.3.2.19)
          Length = 2272

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 128 ggcggcggtggcggtggtcgtagcggtggcgg 159
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>emb|CR606205.1| full-length cDNA clone CS0DI068YA21 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 2212

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 115 ggcggcggtggcggtggtcgtagcggtggcgg 146
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>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence
          Length = 141442

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 127   ggcggcggtggccgtggtcgtttcggtggcgg 158
             |||||||||||| ||||||||  |||||||||
Sbjct: 87037 ggcggcggtggcggtggtcgtagcggtggcgg 87068
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>emb|BX005294.6| Zebrafish DNA sequence from clone CH211-189K21 in linkage group 14,
              complete sequence
          Length = 151151

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     agttgggtggtgtgctgctgtctc 94
              ||||||||||||| ||||||||||
Sbjct: 118697 agttgggtggtgttctgctgtctc 118720
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>gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, complete sequence
          Length = 191108

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 33301 accagttgggtggggtgctgctgt 33324
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>gb|AC138836.2| Homo sapiens chromosome 5 clone RP11-1221E9, complete sequence
          Length = 182834

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 87926 accagttgggtggggtgctgctgt 87949
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>gb|AC138853.2| Homo sapiens chromosome 5 clone RP11-1325J9, complete sequence
          Length = 174039

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 18811 accagttgggtggggtgctgctgt 18788
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>gb|AC138917.2| Homo sapiens chromosome 5 clone RP11-630I7, complete sequence
          Length = 154824

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    accagttgggtggtgtgctgctgt 91
             ||||||||||||| ||||||||||
Sbjct: 78204 accagttgggtggggtgctgctgt 78227
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>gb|BC050600.1| Homo sapiens huntingtin interacting protein 2, mRNA (cDNA clone
           MGC:60046 IMAGE:6502901), complete cds
          Length = 957

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 73  ggcggcggtggcggtggtcgtagcggtggcgg 104
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>gb|BC006419.1| Homo sapiens cDNA clone IMAGE:3946309, complete cds
          Length = 1343

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 192 ggcggcggtggcggtggtcgtagcggtggcgg 161
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>gb|AC121114.10| Mus musculus chromosome 15, clone RP23-63M19, complete sequence
          Length = 337658

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     accagttgggtggtgtgctg 87
              ||||||||||||||||||||
Sbjct: 256397 accagttgggtggtgtgctg 256378
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 127     ggcggcggtggccgtggtcg 146
               ||||||||||||||||||||
Sbjct: 5674429 ggcggcggtggccgtggtcg 5674448
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>dbj|AB022436.1| Homo sapiens LIG mRNA for E2 ubiquitin-conjugating enzyme
           alternative splicing form, complete cds
          Length = 820

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 21  ggcggcggtggcggtggtcgtagcggtggcgg 52
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>dbj|AB022435.1| Homo sapiens LIG mRNA for E2 ubiquitin-conjugating enzyme, complete
           cds
          Length = 973

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 127 ggcggcggtggccgtggtcgtttcggtggcgg 158
           |||||||||||| ||||||||  |||||||||
Sbjct: 21  ggcggcggtggcggtggtcgtagcggtggcgg 52


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,638,665
Number of Sequences: 3902068
Number of extensions: 1638665
Number of successful extensions: 123771
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123174
Number of HSP's gapped (non-prelim): 597
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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